EY702426 | Citrus Genome Database

Overview


Name	EY702426
Unique Name	EY702426
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	803

Libraries


Library Name	Type
Sweet orange fruit, development stadium (2 of 6)	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig6283	contig	Csv1_Contig6283:133..935.	BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins

Homology

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_NICTO (Photosystem II reaction center protein K OS=Nicotiana tomentosiformis GN=psbK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.996e-22
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_NICSY (Photosystem II reaction center protein K OS=Nicotiana sylvestris GN=psbK PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.996e-22
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLN FSL+ ICLNS L+SSSF F KLPEAYAFLNPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNTFSLIGICLNSTLFSSSFFFGKLPEAYAFLNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_CALFG (Photosystem II reaction center protein K OS=Calycanthus floridus var. glaucus GN=psbK PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 1.336e-21
Identity = 54/61 (88.52%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL  ICLNSAL+SSSF FAKLPEAYAF NPIVDVMPVIP LFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALHSSSFFFAKLPEAYAFFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_SINAL (Photosystem II reaction center protein K OS=Sinapis alba GN=psbK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.745e-21
Identity = 51/61 (83.61%), Postives = 55/61 (90.16%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIF+L+ IC NSAL+SS+FL AKLPEAYAFLNPIVDVMPVIP  F LLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICICFNSALFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_LACSA (Photosystem II reaction center protein K OS=Lactuca sativa GN=psbK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.745e-21
Identity = 54/61 (88.52%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL  ICLNSALY SS  FAKLPEAYAFLNPIVDVMPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYPSSLFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_HELAN (Photosystem II reaction center protein K OS=Helianthus annuus GN=psbK PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.745e-21
Identity = 54/61 (88.52%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL  ICLNSALY SS  FAKLPEAYAFLNPIVDVMPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYPSSLFFAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 59

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_NYMAL (Photosystem II reaction center protein K OS=Nymphaea alba GN=psbK PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.279e-21
Identity = 52/61 (85.25%), Postives = 53/61 (86.89%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            M NIFSL+ ICLNSAL  S F FAKLPEAYAFLNPIVD MPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MPNIFSLICICLNSALQPSGFFFAKLPEAYAFLNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_CUCSA (Photosystem II reaction center protein K OS=Cucumis sativus GN=psbK PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 2.279e-21
Identity = 52/61 (85.25%), Postives = 53/61 (86.89%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNI S + ICLNS LYSSSF  AKLPEAYAFLNPIVDVMPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNILSFIGICLNSFLYSSSFFVAKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_SPIOL (Photosystem II reaction center protein K OS=Spinacia oleracea GN=psbK PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.887e-21
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL  ICLNSALYSSSF F KLPEAYAFL+PIVD MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSALYSSSFFFGKLPEAYAFLSPIVDFMPVIPLFFFLLAFVWQAAVSFR 59

[Close]

BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_PELHO (Photosystem II reaction center protein K OS=Pelargonium hortorum GN=psbK PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 3.887e-21
Identity = 51/61 (83.61%), Postives = 54/61 (88.52%), Query Frame = 1

Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            M+NIFS + I L+SALYSSSF F KLPEAYAFLNPIVDVMPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MINIFSFICIYLHSALYSSSFFFGKLPEAYAFLNPIVDVMPVIPLFFFLLAFVWQAAVSFR 61

The following BLAST results are available for this feature:

BLAST of EY702426 vs. ExPASy Swiss-Prot

BLAST of EY702426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59


Match Name	E-value	Identity	Description
PSBK_NICTO	5.996e-22	83.61	Photosystem II reaction center protein K OS=Nicoti...	[more]
PSBK_NICSY	5.996e-22	83.61	Photosystem II reaction center protein K OS=Nicoti...	[more]
PSBK_CALFG	1.336e-21	88.52	Photosystem II reaction center protein K OS=Calyca...	[more]
PSBK_SINAL	1.745e-21	83.61	Photosystem II reaction center protein K OS=Sinapi...	[more]
PSBK_LACSA	1.745e-21	88.52	Photosystem II reaction center protein K OS=Lactuc...	[more]
PSBK_HELAN	1.745e-21	88.52	Photosystem II reaction center protein K OS=Helian...	[more]
PSBK_NYMAL	2.279e-21	85.25	Photosystem II reaction center protein K OS=Nympha...	[more]
PSBK_CUCSA	2.279e-21	85.25	Photosystem II reaction center protein K OS=Cucumi...	[more]
PSBK_SPIOL	3.887e-21	86.89	Photosystem II reaction center protein K OS=Spinac...	[more]
PSBK_PELHO	3.887e-21	83.61	Photosystem II reaction center protein K OS=Pelarg...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS00-C3-701-006-G12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY702426 ID=EY702426; Name=EY702426; organism=Citrus sinensis; type=EST; length=803bp
TTTTCCTCGACCCCGCGTCCGGAATTCAATTTACAATTGTATGAAAGTAT
GATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTGTTTTGATTGGG
TCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTTTTCTTCATTTT
TATCTTATATCAATAAGATATTAATAACTCAATCAAAATAAAATTATCTC
CAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTTAATGTATATCT
GTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCGCTAAATTACCC
GAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATGCCAGTAATACC
TGGTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTC
GATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATTTATTCTAGTTC
GAAAAAAAAAAAATTCTAACAATTACTTACATAAGAGCAGATGAGTGTTA
CAATATGAACGAACCCCCGCCTCAATTCAAACATTCAAACAATGAAATTC
TTGGGGAACCGAGATCCATTTTGATCCCCCATTTGCTATTTGCCATTTTG
ACCCTTCTTTCCTGAAACCATCTTATATTAGAGCCAACCAAAACGTAGAA
TTCTAACTGGGTGAATTTAATTGATGAACACCAGTTTCTATTTAAAGATT
CAATTCTCAAAAGAACTTCCTTTCCTGACTGTCAAATTGGATATGTACTA
TAAAAATAAAGACTCATTCTCTTTCTCCTTTTCCCCAAAACCTGCATTTG
GGA