EY702426

Overview
NameEY702426
Unique NameEY702426
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6283 contig Csv1_Contig6283:133..935. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_PIPCE (Photosystem II reaction center protein K OS=Piper cenocladum GN=psbK PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.519e-20
Identity = 52/61 (85.25%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL  ICL+SAL+SSSF FAKLPEAYA  NPIVDVMPVIP LFFLLA VWQAAVSFR
Sbjct:    1 MLNIFSL--ICLSSALHSSSFFFAKLPEAYALFNPIVDVMPVIPVLFFLLALVWQAAVSFR 59          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_OENEH (Photosystem II reaction center protein K OS=Oenothera elata subsp. hookeri GN=psbK PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 4.297e-20
Identity = 52/61 (85.25%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL  ICLNS LYSS F  AKLPEAYAFLNPIVDVMPVIP  F LLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--ICLNSDLYSSRFFLAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 59          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_AMBTC (Photosystem II reaction center protein K OS=Amborella trichopoda GN=psbK PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 5.612e-20
Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            M NIFSL+ ICL+SAL+SS F FAKLPEAYA  NPIVDVMPVIP  FFLLAFVWQAA SFR
Sbjct:    1 MPNIFSLICICLHSALHSSGFFFAKLPEAYAVFNPIVDVMPVIPLFFFLLAFVWQAAASFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_SILLA (Photosystem II reaction center protein K OS=Silene latifolia GN=psbK PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.573e-20
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIFSL  I LNSALYSSS  FAKLPEAYAFL+PIVD MPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MLNIFSL--IGLNSALYSSSCFFAKLPEAYAFLSPIVDFMPVIPLLFFLLAFVWQAAVSFR 59          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_ARATH (Photosystem II reaction center protein K OS=Arabidopsis thaliana GN=psbK PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.573e-20
Identity = 49/61 (80.33%), Postives = 53/61 (86.89%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            MLNIF+L+ I  NS L+SS+FL AKLPEAYAFLNPIVDVMPVIP  F LLAFVWQAAVSFR
Sbjct:    1 MLNIFNLICIFFNSTLFSSTFLVAKLPEAYAFLNPIVDVMPVIPLFFLLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_SECCE (Photosystem II reaction center protein K OS=Secale cereale GN=psbK PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.785e-19
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            M NI SL  IC NS LY +SF FAKLPEAYA  NPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLYPTSFFFAKLPEAYAIFNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_HORVU (Photosystem II reaction center protein K OS=Hordeum vulgare GN=psbK PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.785e-19
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            M NI SL  IC NS LY +SF FAKLPEAYA  NPIVD+MPVIP  FFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVLYPTSFFFAKLPEAYAIFNPIVDIMPVIPLFFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSJ (Photosystem II reaction center protein K OS=Oryza sativa subsp. japonica GN=psbK PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.638e-19
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSI (Photosystem II reaction center protein K OS=Oryza sativa subsp. indica GN=psbK PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.638e-19
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
BLAST of EY702426 vs. ExPASy Swiss-Prot
Match: PSBK_ORYSA (Photosystem II reaction center protein K OS=Oryza sativa GN=psbK PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.638e-19
Identity = 47/61 (77.05%), Postives = 49/61 (80.33%), Query Frame = 1
Query:  220 MLNIFSLMYICLNSALYSSSFLFAKLPEAYAFLNPIVDVMPVIPGLFFLLAFVWQAAVSFR 402
            M NI SL  IC NS +Y +SF FAKLPEAYA  NPIVD MPVIP LFFLLAFVWQAAVSFR
Sbjct:    1 MPNILSLTCICFNSVIYPTSFFFAKLPEAYAIFNPIVDFMPVIPVLFFLLAFVWQAAVSFR 61          
The following BLAST results are available for this feature:
BLAST of EY702426 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 59
Match NameE-valueIdentityDescription
PSBK_PIPCE2.519e-2085.25Photosystem II reaction center protein K OS=Piper ... [more]
PSBK_OENEH4.297e-2085.25Photosystem II reaction center protein K OS=Oenoth... [more]
PSBK_AMBTC5.612e-2080.33Photosystem II reaction center protein K OS=Ambore... [more]
PSBK_SILLA9.573e-2086.89Photosystem II reaction center protein K OS=Silene... [more]
PSBK_ARATH9.573e-2080.33Photosystem II reaction center protein K OS=Arabid... [more]
PSBK_SECCE2.785e-1977.05Photosystem II reaction center protein K OS=Secale... [more]
PSBK_HORVU2.785e-1977.05Photosystem II reaction center protein K OS=Hordeu... [more]
PSBK_ORYSJ3.638e-1977.05Photosystem II reaction center protein K OS=Oryza ... [more]
PSBK_ORYSI3.638e-1977.05Photosystem II reaction center protein K OS=Oryza ... [more]
PSBK_ORYSA3.638e-1977.05Photosystem II reaction center protein K OS=Oryza ... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-G12-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702426 ID=EY702426; Name=EY702426; organism=Citrus sinensis; type=EST; length=803bp
TTTTCCTCGACCCCGCGTCCGGAATTCAATTTACAATTGTATGAAAGTAT
GATTTCTTCAATTCTCACACGAGAATAGAAGGATTTTTGTTTTGATTGGG
TCGGTTCCAAGAAGTTTTTTTTGTCTACCTTACTTTCTTTTCTTCATTTT
TATCTTATATCAATAAGATATTAATAACTCAATCAAAATAAAATTATCTC
CAAGAACAAAATGTTTGTTATGCTTAATATCTTTAGTTTAATGTATATCT
GTCTTAATTCTGCCCTTTATTCGAGTAGTTTTTTATTCGCTAAATTACCC
GAGGCCTACGCTTTTTTGAATCCAATTGTAGATGTTATGCCAGTAATACC
TGGTCTATTTTTTCTCTTAGCCTTTGTTTGGCAAGCTGCTGTAAGTTTTC
GATAAGATCTTTAATATTGTGCTAGAAAAATTCATGATTTATTCTAGTTC
GAAAAAAAAAAAATTCTAACAATTACTTACATAAGAGCAGATGAGTGTTA
CAATATGAACGAACCCCCGCCTCAATTCAAACATTCAAACAATGAAATTC
TTGGGGAACCGAGATCCATTTTGATCCCCCATTTGCTATTTGCCATTTTG
ACCCTTCTTTCCTGAAACCATCTTATATTAGAGCCAACCAAAACGTAGAA
TTCTAACTGGGTGAATTTAATTGATGAACACCAGTTTCTATTTAAAGATT
CAATTCTCAAAAGAACTTCCTTTCCTGACTGTCAAATTGGATATGTACTA
TAAAAATAAAGACTCATTCTCTTTCTCCTTTTCCCCAAAACCTGCATTTG
GGA
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