EY702419

Overview
NameEY702419
Unique NameEY702419
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.057e-17
Identity = 67/214 (31.31%), Postives = 103/214 (48.13%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLV-AGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            M  +  F     +GV S  T  Y    +   +      +  L   IP  + +I  + +IG LC GN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS     ++GCLVHP T   +L+ +  +L+V  V  GT NRG   + A +  N   A  G DT
Sbjct:    1 MIMKTYFSGVSTLGVHSLATEDYGFFPLSVDQKTMERMKNVLD--IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDT 211          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.380e-17
Identity = 56/206 (27.18%), Postives = 104/206 (50.49%), Query Frame = 2
Query:  221 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDTQQLNSLLL 838
            +G+++   +    +  G +++  +  E  L      + TS+  TR++G L   N +G+++P T ++ E +  +      VVV  ++ + +ALGN I+ ND   +      RE   +IAD LG+EV ++ IAG   VG+     + G ++HP T  ED+  +  ++ V +   T+N G   +++GL  N  +   GS T     ++L
Sbjct:   14 IGIYTSANDEKIFLPRGFAKAKAARLEGYLG--AEALYTSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLANKKSVVAGSFTSGPEIMML 215          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_METM7 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.802e-17
Identity = 67/214 (31.31%), Postives = 103/214 (48.13%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLV-AGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            M  +  F     +GV S  T  Y    +   +      +  L   IP  + +I  + +IG LC GN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS     ++GCLVHP T   +L+ +  +L+V  V  GT NRG   + A +  N   A  G DT
Sbjct:    1 MIMKTYFSGVSTLGVHSLATEDYGFFPLSVDQKTMERMKNVLD--IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDT 211          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_STAMF (Translation initiation factor 6 OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.354e-17
Identity = 67/219 (30.59%), Postives = 103/219 (47.03%), Query Frame = 2
Query:  194 RLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDTQQLNSLLLR 841
            RL    +  +GV+    N+  LV    S        AE  DV  +V+T I  T + G L  GN NG++LP    D+EL  L N+L      + V R +   +ALGN + CN+   +  ++L+R+    I++ LGVE   + I    + GS     ++G ++HP  S ++  EL  + +V     TVN G   I +GL  N+     G  T     L +R
Sbjct:    5 RLSLFGNPNIGVYVFANNSIALVPPSLSSGEKKVI-AETLDV-ELVETKIANTILNGVLVVGNDNGIILPRIILDEELDILNNNLKKHDLNIYVSRSKN--TALGNILLCNNKACIAGSELERQELNKISEALGVEALYKDIMNLTIPGSLAVVTDKGGVIHPDISDDENRELKEIFKVAFERATVNSGIPFIKSGLIANNKGIIVGEYTTGPEILRIR 219          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_METM5 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=eif6 PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.244e-17
Identity = 67/214 (31.31%), Postives = 103/214 (48.13%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLV-AGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            M  +  F     +GV S  T  Y    +   +      +  L   IP  + +I  + +IG LC GN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS     ++GCLVHP T   +L+ +  +L+V  V  GT NRG   + A +  N   A  G DT
Sbjct:    1 MIMKTYFSGVSTLGVHSLATEDYGFFPLSVDQKTMERMKNVLD--IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANIKGAVVGGDT 211          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.849e-17
Identity = 61/213 (28.64%), Postives = 98/213 (46.01%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDTQQL 823
            M  ++   NS  +GV+++  N    + +  S+     FE  L     V K SIG + +IG + + N NG+++     D  + +L++   +   +  I  +L+A GN I  NDH AL H        + I DVLGVE  + +IAG   VGS     +RG LV      +++  L  L ++ +  GT N G   + A +  N      G  T  +
Sbjct:    1 MIKKVSILNSNFIGVYARTWNDVTFLPVNISDEEKRIFEETLKT--EVYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIANSNGILVGEATTSI 207          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.945e-17
Identity = 56/163 (34.36%), Postives = 82/163 (50.31%), Query Frame = 2
Query:  326 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            VV+T I  + +IG +  GN NG ++   T D+E     N L +   V R++ +++A GN I  ND  AL H  L  +  E I   L VEV R TI G   VG      N+G LVHP  + E+L  L  L ++P+  GTV+ G  ++ + +         G+ T
Sbjct:   46 VVRTLINESTLIGSMMTGNSNGFIVSDLTLDREA----NLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAILATTKGLITGTRT 204          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.526e-16
Identity = 61/213 (28.64%), Postives = 103/213 (48.36%), Query Frame = 2
Query:  185 MATRLMFENSCEVGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLL---QVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            M   L       +GV++++     +V +   + F     AE  DV  V++T + G+ +IG L  GN  G ++     D EL+ L+    D ++   + E ++A GN I  ND  A+ H D+     EM+AD L V++   + AG   VG  C+  N G L+   ++ E++++L   +    V +  G+VN G  +I  GL +N      G+ T
Sbjct:    1 MDPTLSLNGDPNIGVYARVFEDLAVVPVEAPKEFRDKI-AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQE-YGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLINSKGYLAGNAT 207          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.993e-16
Identity = 61/202 (30.20%), Postives = 100/202 (49.50%), Query Frame = 2
Query:  221 VGVFSKLTNAYCLVAIGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLV-AGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            +GV S  T  + L      E+  + F+  L   +PV   +IG + +IG LC  N  G++LP  T ++E   L + L +    ++V+ I  + +A GN I  ND   +   +L  +  +   D+  VEV  + IA    VGS     N+G LVHP T+ E+L+ +  +L++  +  GT ++G   + A +  N   A  G DT
Sbjct:   13 IGVLSLSTEKFGLAPYFAEENTINKFKKVLD--VPVKALNIGNSSLIGALCCANSYGIILPPFTLNREKTILSDFLKENDIDIIVKEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVANSNGAVIGGDT 211          
BLAST of EY702419 vs. ExPASy Swiss-Prot
Match: IF6_SULTO (Translation initiation factor 6 OS=Sulfolobus tokodaii GN=eif6 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 9.890e-16
Identity = 62/203 (30.54%), Postives = 105/203 (51.72%), Query Frame = 2
Query:  221 VGVFSKLTNAYCLVA----IGGSESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVE-VFRQTIAGNILVGSYCSFXNRGCLVHPHTSIEDLDELXTLLQVPLVAGTVNRGKRVIAAGLTVNDWTAFCGSDT 814
            +G++    + Y +V     +   +    TF+ E      +++T+I  + +IG   AGN N +LLP    D+E++ +++   D V V+ ++ R +ALGN I  N + AL + +L     + I + L ++ + + +IA  I VGS     ++  LVH  T+ E+LD+L  L +V +  GTVN G   I +GL  N      GS T
Sbjct:   14 IGIYIFTNDKYTIVPKNLDVETIQKIQETFKTE------IIQTTIAKSFLIGIFVAGNNNVILLPRNVDDEEVKKIKDIARD-VRVEILDIRPTALGNIILTNSYGALIYPELSSIEFKKIKESLQIDNIEKGSIANIITVGSVGVITDKAGLVHIDTTEEELDKLSKLFRVKIDTGTVNFGSAFIHSGLIANRNGVLVGSAT 209          
The following BLAST results are available for this feature:
BLAST of EY702419 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_METM61.057e-1731.31Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_CENSY1.380e-1727.18Translation initiation factor 6 OS=Cenarchaeum sym... [more]
IF6_METM71.802e-1731.31Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_STAMF2.354e-1730.59Translation initiation factor 6 OS=Staphylothermus... [more]
IF6_METM55.244e-1731.31Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_PICTO6.849e-1728.64Translation initiation factor 6 OS=Picrophilus tor... [more]
IF6_UNCMA8.945e-1734.36Translation initiation factor 6 OS=Uncultured meth... [more]
IF6_METLZ1.526e-1628.64Translation initiation factor 6 OS=Methanocorpuscu... [more]
IF6_META31.993e-1630.20Translation initiation factor 6 OS=Methanococcus a... [more]
IF6_SULTO9.890e-1630.54Translation initiation factor 6 OS=Sulfolobus toko... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-006-G05-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702419 ID=EY702419; Name=EY702419; organism=Citrus sinensis; type=EST; length=889bp
CCACGCGTCCGGCAGAAACCCTCTTCTCATCTCATATTGGGTGGGGTTTG
TTTCCGGCCGAAAGGGTAACAAGTGAAGGGCCGCCTCATCATCATTATCA
TCATCGCTTTGGCATTTCGAGTTTTCGACATCGTTTTCCGTCATTTTGCT
TTTTAATCAATTCAATTTCTGTCAATCTGTAATCATGGCAACCAGGCTTA
TGTTTGAGAATTCATGTGAGGTTGGTGTGTTTTCCAAGCTCACTAATGCT
TATTGCTTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCACATTTGA
GGCTGAGTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATTGGTGGCA
CTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCTTCTCTTG
CCACACACTACCACAGACCAAGAACTTCAACACTTGAGGAACAGCCTACC
TGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCCCTGGGCA
ATTGTATAGCATGCAACGACCATGTTGCTCTTACACACACAGATCTTGAC
AGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAGTTTTTAG
GCAGACAATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCCTTCNTCA
ACAGAGGATGCTTGGTCCACCCTCACACATCCATTGAAGACTTGGATGAA
CTTTNCACTCTCTTGCAAGTACCTCTGGTGGCTGGGACTGTGAACCGTGG
AAAGCGAGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACAGCATTCT
GTGGATCAGACACACAGCAACTGAACTCTCTGTTATTGAGAGGGTTTCAG
TTGAGGGAGCTCAACTACTGCCCTTGGGACGAGATGAGA
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