CX078402

Overview
NameCX078402
Unique NameCX078402
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_PSYIN (Phosphatidylserine decarboxylase proenzyme OS=Psychromonas ingrahamii (strain 37) GN=psd PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.464e-20
Identity = 66/174 (37.93%), Postives = 93/174 (53.45%), Query Frame = -1
Query:  357 KGQKFSIQGLLGN-DICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL------------------KNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETL 821
            KG  FS++ LLG  D  +  F  G      LAP+DYHR H+P++G +EQ + IPG L++VNP+   +   N+F  N+R V+I STA  G VA V +GAT+V SI  +                  KN    ++KG E G F   GSTV+ +F K++I   ++L   S   L  L
Sbjct:  108 KGHDFSLRELLGGRDDVAAPFDKGLFSTIYLAPKDYHRIHMPITGKLEQMIFIPGDLFSVNPLTAQN-VPNLFARNERAVAIFSTA-VGPVAMVLVGATIVASIETVWAGTLTANADKEIQYWDYKNQDITLEKGAEMGRFKL-GSTVVALFPKESIHFAENLQAGSVTRLGEL 278          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_VIBCM (Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain M66-2) GN=psd PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.716e-20
Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = -1
Query:  390 KGQKFSIQGLLGNDI-CSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDL 821
            KG  +S Q LLG D   +  F +G      L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI  +                      N    +KKG+E G F   GSTVI +F K AI+ D  +
Sbjct:  107 KGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLKKGEEMGRFKL-GSTVINLFAKQAIRFDDSM 269          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_VIBCH (Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae GN=psd PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.716e-20
Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = -1
Query:  390 KGQKFSIQGLLGNDI-CSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDL 821
            KG  +S Q LLG D   +  F +G      L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI  +                      N    +KKG+E G F   GSTVI +F K AI+ D  +
Sbjct:  107 KGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLKKGEEMGRFKL-GSTVINLFAKQAIRFDDSM 269          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_VIBC3 (Phosphatidylserine decarboxylase proenzyme OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=psd PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.716e-20
Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = -1
Query:  390 KGQKFSIQGLLGNDI-CSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFL---------------------KNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDL 821
            KG  +S Q LLG D   +  F +G      L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI  +                      N    +KKG+E G F   GSTVI +F K AI+ D  +
Sbjct:  107 KGHTYSAQELLGGDAKLAEEFRDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIELVWAGTVTPPRGNTVYRWDYPANGNQAVVLKKGEEMGRFKL-GSTVINLFAKQAIRFDDSM 269          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_ANOFW (Phosphatidylserine decarboxylase proenzyme OS=Anoxybacillus flavithermus (strain DSM 21510 / WK1) GN=psd PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.316e-19
Identity = 52/146 (35.62%), Postives = 85/146 (58.22%), Query Frame = -1
Query:  387 IKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLL 824
            +KG+ +SI+ +LG+D  +  +L+GT +I  L+P  YHR H P+ G + +  ++ G  Y VN + +      +    +R+  + +   +   A V +GA  V SI  L +  D VKKG+E GYFSF GSTV+ +FEKD   +D+ ++
Sbjct:  103 VKGKTYSIREMLGDDQIAEKYLHGTFIILYLSPSHYHRIHSPICGEVVKQWELGGKSYPVNRLGLKYGKAPLSKNYRRITELYTNGMY--TAIVKVGAMFVNSIE-LTHEHDHVKKGEEIGYFSF-GSTVVLLFEKDVFTLDEQIV 244          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_GEOSW (Phosphatidylserine decarboxylase proenzyme OS=Geobacillus sp. (strain WCH70) GN=psd PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.829e-19
Identity = 60/168 (35.71%), Postives = 98/168 (58.33%), Query Frame = -1
Query:  324 IKGQKFSIQGLLGNDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKY-CNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSITFLKNTGDFVKKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALETLVSVGMRMGVSK 824
            +KG+ +SI  +LG+D  +  +LNG  +I  L+P  YHR H P+SG++++   +    Y VN + +  KY     ++N R+++ ++ A+   +A V IGA  V SI  L +  + + KG E  YFSF GSTV+ +FEKD+I++D+ ++          V VG R+G  K
Sbjct:  103 VKGKTYSIAEMLGSDEAAKKYLNGLFIILYLSPSHYHRIHSPISGVVQKQWALGKKSYPVNRLGL--KYGKRPLSKNYRMITEVA-ANGKHIAIVKIGAMFVNSIE-LTHASEHLTKGQEIAYFSF-GSTVVLLFEKDSIELDERIVAPMG------VKVGERIGYLK 259          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_PHOPR (Phosphatidylserine decarboxylase proenzyme OS=Photobacterium profundum GN=psd PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.532e-19
Identity = 63/161 (39.13%), Postives = 84/161 (52.17%), Query Frame = -1
Query:  405 KGQKFSIQGLLGND-ICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVICVFEKDAIQ 821
            KG  F    LLG D   +  F++G      L+P+DYHR H+P  G + Q + +PG L++VNP+   +   N+F  N+RVV I  TAH G +A V +GAT+VGSI      T    TG  V               KKG E G F   GSTVI +F KD ++
Sbjct:  108 KGHYFDACELLGGDKALAEEFVDGDFATLYLSPRDYHRVHMPCDGTLRQMIYVPGDLFSVNPLTAQN-VPNLFARNERVVCIFDTAH-GPIAQVLVGATIVGSIETVWAGTVTPPTGPEVRRWDYPATGTQAIVLKKGQEMGRFKL-GSTVINLFPKDMVR 265          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_ALISL (Phosphatidylserine decarboxylase proenzyme OS=Aliivibrio salmonicida (strain LFI1238) GN=psd PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.242e-18
Identity = 62/166 (37.35%), Postives = 86/166 (51.81%), Query Frame = -1
Query:  390 KGQKFSIQGLLGNDI-CSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVICVFEKDAIQIDKDL 821
            KG  +S Q LLG D   +  F+ G      L+P+DYHR H+P    + + V +PG L++VNP+   +   N+F  N+RVV I  T  FG +A V +GAT+VGSI      T    TG  V               KKG+E G F   GSTVI +F  ++I  D+ +
Sbjct:  108 KGHVYSAQELLGGDAELAEEFIGGEFATLYLSPRDYHRVHMPCDATLRKMVYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQVLVGATIVGSIETTWADTVTPPTGPAVKTWHYPLSGDDVICFKKGEEMGRFKL-GSTVINLFAPNSITFDESM 270          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_PSEHT (Phosphatidylserine decarboxylase proenzyme OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=psd PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 4.234e-18
Identity = 63/176 (35.80%), Postives = 87/176 (49.43%), Query Frame = -1
Query:  360 KGQKFSIQGLLG-NDICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQNSARALET 821
            KG  +S+Q LLG N   +  FL G      LAP+DYHR H+P+ G + + + +PG L++VNP+   +   N+F  N+RVV+I  T   G +A V +GAT+V SI      T     G  V               KKG+E G F   GSTV+  +  D   I  D L  +   L T
Sbjct:  109 KGHDYSLQALLGGNKDDTTPFLGGKFATIYLAPKDYHRIHMPIDGTLSKMIYVPGDLFSVNPLTAQN-VPNLFARNERVVAIFET-EIGPLAMVLVGATIVASIETIWAGTVTPPAGSDVFSWNYPTKGENAISLKKGEEMGRFKL-GSTVVLAWGDDKADILDDQLPETVTRLGT 281          
BLAST of CX078402 vs. ExPASy Swiss-Prot
Match: PSD_VIBFM (Phosphatidylserine decarboxylase proenzyme OS=Vibrio fischeri (strain MJ11) GN=psd PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.432e-18
Identity = 62/169 (36.69%), Postives = 88/169 (52.07%), Query Frame = -1
Query:  381 KGQKFSIQGLLGND-ICSNSFLNGTMVIFRLAPQDYHRFHLPVSGIIEQFVDIPGCLYTVNPIAVNSKYCNVFTENKRVVSIISTAHFGKVAFVAIGATMVGSI------TFLKNTGDFV---------------KKGDEFGYFSFGGSTVICVFEKDAIQIDKDLLQN 821
            KG  +S Q LLG D   +  F+ G      L+P DYHR H+P    + + + +PG L++VNP+   +   N+F  N+RVV I  T  FG +A + +GAT+VGSI      T    TG  V               KKG+E G F   GSTVI +F  ++I+ D D ++N
Sbjct:  108 KGHVYSAQELLGGDETLAAEFMGGEFATLYLSPSDYHRVHMPCDATLRKMIYVPGDLFSVNPLTAEN-VPNLFARNERVVCIFDT-EFGPMAQILVGATIVGSIETTWAETVTPPTGPAVKTWHYPLSGDDMICFKKGEEMGRFKL-GSTVINLFAPNSIKFD-DSMEN 272          
The following BLAST results are available for this feature:
BLAST of CX078402 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 252
Match NameE-valueIdentityDescription
PSD_PSYIN3.464e-2037.93Phosphatidylserine decarboxylase proenzyme OS=Psyc... [more]
PSD_VIBCM7.716e-2037.35Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]
PSD_VIBCH7.716e-2037.35Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]
PSD_VIBC37.716e-2037.35Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]
PSD_ANOFW1.316e-1935.62Phosphatidylserine decarboxylase proenzyme OS=Anox... [more]
PSD_GEOSW3.829e-1935.71Phosphatidylserine decarboxylase proenzyme OS=Geob... [more]
PSD_PHOPR6.532e-1939.13Phosphatidylserine decarboxylase proenzyme OS=Phot... [more]
PSD_ALISL3.242e-1837.35Phosphatidylserine decarboxylase proenzyme OS=Alii... [more]
PSD_PSEHT4.234e-1835.80Phosphatidylserine decarboxylase proenzyme OS=Pseu... [more]
PSD_VIBFM9.432e-1836.69Phosphatidylserine decarboxylase proenzyme OS=Vibr... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8G12_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8G12-N24-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078402 ID=CX078402; Name=CX078402; organism=Citrus sinensis; type=EST; length=827bp
TTTTTTTGTCCAAAAAGATAAGCAGTGCGCCAAAGACGCAAATTGTGAAG
CTGGGGAAAAAGATAAGCAGTGCGCCAAAGACGCAAATTGTGAAGCTGGG
GATGCAATTTCTACAATAGCTACAAAATTAAGTAGCATGTCAATGACTTT
AATGGAGAAGCCAATGTCTACTAAGCCTTAGCTCACATTATTCAAGCTGC
TATAAGACAATCTTCCAAGCTTGGTAACTCAGTTTGAAGTATGTACTAAG
CCTTAGCTCACCTTATTCAAGCTGCTATAACACAAGCTTCCAAGCTTGGT
AACTCAGTTTGAAGTATTTCCTTTTTGGAGACTCCCATCCTCATTCCTAC
GGAAACTAATGTTTCCAGGGCTCTGGCACTATTTTGTAGGAGGTCCTTGT
CTATTTGTATTGCATCCTTTTCAAATACACAAATTACTGTGCTCCCACCA
AATGAGAAATATCCAAACTCATCTCCTTTTTTGACAAAGTCACCCGTGTT
CTTCAGAAAAGTGATGCTACCAACCATGGTTGCACCAATTGCTACAAAGG
CTACCTTTCCGAAATGTGCAGTCGAAATAATTGATACAACACGCTTGTTC
TCCGTAAAAACATTGCAATATTTGCTATTAACAGCAATGGGATTAACAGT
GTATAGGCATCCAGGAATATCCACAAATTGCTCAATGATTCCCGACACCG
GAAGATGAAAACGATGATAATCCTGTGGCGCCAACCGAAAAATCACCATA
GTTCCATTTAAAAAAGAATTGGAACATATGTCATTTCCCAAAAGACCTTG
AATTGAAAACTTTTGACCCTTGATCCA
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