CX078370

Overview
NameCX078370
Unique NameCX078370
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length538
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX078370 vs. ExPASy Swiss-Prot
Match: DEF04_ARATH (Defensin-like protein 4 OS=Arabidopsis thaliana GN=PDF2.1 PE=2 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 1.175e-12
Identity = 31/52 (59.62%), Postives = 33/52 (63.46%), Query Frame = 3 
Query:   96 VPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 251
            V  E R C SQS  F G C S  NC  VC NEGF GG CRG RRRCFC++ C
Sbjct:   26 VTVEARTCASQSQRFKGKCVSDTNCENVCHNEGFPGGDCRGFRRRCFCTRNC 77
[Close]
BLAST of CX078370 vs. ExPASy Swiss-Prot
Match: DEF05_ARATH (Defensin-like protein 5 OS=Arabidopsis thaliana GN=PDF2.4 PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 3.420e-12
Identity = 29/53 (54.72%), Postives = 36/53 (67.92%), Query Frame = 3 
Query:   93 MVPAEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 251
            +V  E R C++ S+ F+G C S  NCA VC NEGFS G CRG RRRC C++ C
Sbjct:   24 LVTVEARTCETSSNLFNGPCLSSSNCANVCHNEGFSDGDCRGFRRRCLCTRPC 76
[Close]
BLAST of CX078370 vs. ExPASy Swiss-Prot
Match: DF322_SOLTU (Defensin-like protein P322 OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 7.618e-12
Identity = 30/50 (60.00%), Postives = 32/50 (64.00%), Query Frame = 3 
Query:  102 AEGRVCQSQSHHFHGACFSHHNCAFVCRNEGFSGGKCRGVRRRCFCSKLC 251
            AE R C+S SH F G C    NCA VC  E FSGG C G RRRCFC+K C
Sbjct:   25 AEARHCESLSHRFKGPCTRDSNCASVCETERFSGGNCHGFRRRCFCTKPC 74
The following BLAST results are available for this feature:
BLAST of CX078370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
DEF04_ARATH1.175e-1259.62Defensin-like protein 4 OS=Arabidopsis thaliana GN... [more]
DEF05_ARATH3.420e-1254.72Defensin-like protein 5 OS=Arabidopsis thaliana GN... [more]
DF322_SOLTU7.618e-1260.00Defensin-like protein P322 OS=Solanum tuberosum PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8F08_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8F08-L16-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078370 ID=CX078370; Name=CX078370; organism=Citrus sinensis; type=EST; length=538bp
CGAAAATTTACGAGCTAAAAGAAAAAACAAATATGAAGAGTTTCTTTGGG
ATTTTCTTGCTGCTGCTCATTCTATTTGCTTCTCAAGAGATGATGGTGCC
GGCAGAGGGTAGGGTGTGTCAGTCACAGAGCCATCATTTCCATGGCGCAT
GCTTTAGCCACCACAACTGTGCTTTTGTCTGCAGAAACGAAGGCTTCTCT
GGTGGCAAATGCCGTGGAGTCCGTCGCCGCTGCTTTTGCTCAAAGCTTTG
CTAATTTCCCATTGTCGGTCTTGCTTGTGTGCTCTCTTTTGCCACTTGTT
CCTCAATAATGCATGGCTGGCTACTCTTCGTGCAAGTTTTAAGTGCAGTG
TCTTAGGGCTAGCTTAATGTTAGTTATAAATAAGGAATGCTCTTTCGTTT
TGGTTTTGCTTAATTTGTGTATCATCTGGTATTGATACTCCAGCTGCTTG
CCTAATGAAAGAGCATATCGTCTTGTAGTTTTTCTTTCGCTTGTTTGGAT
GAATGAATGAGTTTGAATTCCTAAAAAAAAAAAAAAAA
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