CX078369

Overview
NameCX078369
Unique NameCX078369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B7_ARATH (Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030 PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.737e-33
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   71 PDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B6_ARATH (Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 SV=3)

HSP 1 Score: 141.354 bits (355), Expect = 1.737e-33
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   76 PDIGISSKAMGIMNSFINDIFEKLASESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 150          
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSJ (Histone H2B.11 OS=Oryza sativa subsp. japonica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.269e-33
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   65 PDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139          
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B11_ORYSI (Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2B.11 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.269e-33
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   65 PDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSS 139          
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B2_MEDTR (Probable histone H2B.2 OS=Medicago truncatula PE=3 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 2.963e-33
Identity = 72/75 (96.00%), Postives = 73/75 (97.33%), Query Frame = 1
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PDIGISSKAMGIMNSFINDIFEKL QE+SRLARYNKKPTITSREIQTAVRLVLPGELAKH VSEGTKAVTKFTSS
Sbjct:   74 PDIGISSKAMGIMNSFINDIFEKLTQESSRLARYNKKPTITSREIQTAVRLVLPGELAKHDVSEGTKAVTKFTSS 148          
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B10_ARATH (Histone H2B.10 OS=Arabidopsis thaliana GN=At5g22880 PE=1 SV=3)

HSP 1 Score: 140.584 bits (353), Expect = 2.963e-33
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PDIGISSKAMGIMNSFINDIFEKLA E+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   71 PDIGISSKAMGIMNSFINDIFEKLAGESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 145          
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B2_SOLLC (Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=2 SV=2)

HSP 1 Score: 140.198 bits (352), Expect = 3.870e-33
Identity = 72/75 (96.00%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PDIGISSK+MGIMNSFINDIFEKLAQE+SRLAR NKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS
Sbjct:   66 PDIGISSKSMGIMNSFINDIFEKLAQESSRLARINKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 140          
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B4_ARATH (Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470 PE=1 SV=3)

HSP 1 Score: 139.813 bits (351), Expect = 5.054e-33
Identity = 70/74 (94.59%), Postives = 73/74 (98.65%), Query Frame = 1
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 222
            PD+GIS KAMGIMNSFINDIFEKLAQE+S+LARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS
Sbjct:   65 PDVGISGKAMGIMNSFINDIFEKLAQESSKLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 138          
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSJ (Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H2B1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.054e-33
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   78 PDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1_ORYSI (Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI_010709 PE=3 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 5.054e-33
Identity = 71/75 (94.67%), Postives = 74/75 (98.67%), Query Frame = 1
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PDIGISSKAM IMNSFINDIFEKLAQEA+RLARYNKKPTITSREIQT+VRLVLPGELAKHAVSEGTKAVTKFTS+
Sbjct:   78 PDIGISSKAMSIMNSFINDIFEKLAQEAARLARYNKKPTITSREIQTSVRLVLPGELAKHAVSEGTKAVTKFTSN 152          
The following BLAST results are available for this feature:
BLAST of CX078369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B7_ARATH1.737e-3396.00Histone H2B.7 OS=Arabidopsis thaliana GN=At3g46030... [more]
H2B6_ARATH1.737e-3396.00Histone H2B.6 OS=Arabidopsis thaliana GN=H2B PE=1 ... [more]
H2B11_ORYSJ2.269e-3396.00Histone H2B.11 OS=Oryza sativa subsp. japonica GN=... [more]
H2B11_ORYSI2.269e-3396.00Histone H2B.11 OS=Oryza sativa subsp. indica GN=H2... [more]
H2B2_MEDTR2.963e-3396.00Probable histone H2B.2 OS=Medicago truncatula PE=3... [more]
H2B10_ARATH2.963e-3396.00Histone H2B.10 OS=Arabidopsis thaliana GN=At5g2288... [more]
H2B2_SOLLC3.870e-3396.00Histone H2B.2 OS=Solanum lycopersicum GN=H2B-2 PE=... [more]
H2B4_ARATH5.054e-3394.59Histone H2B.4 OS=Arabidopsis thaliana GN=At2g37470... [more]
H2B1_ORYSJ5.054e-3394.67Histone H2B.1 OS=Oryza sativa subsp. japonica GN=H... [more]
H2B1_ORYSI5.054e-3394.67Histone H2B.1 OS=Oryza sativa subsp. indica GN=OsI... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8F07-L14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078369 ID=CX078369; Name=CX078369; organism=Citrus sinensis; type=EST; length=450bp
CCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCAT
CAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGT
ACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGA
CTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAA
AGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCG
GTGGATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAA
TTTTACTAGATGAAGTCGTTTTATGTTTTTTGTTTTTAAATCTTTGTTGG
ATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCTGATCCGGGTG
ATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATATGATTTAAGAA
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