CX078369

Overview
NameCX078369
Unique NameCX078369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B2E_HUMAN (Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B2B_MOUSE (Histone H2B type 2-B OS=Mus musculus GN=Hist2h2bb PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1_PONAB (Histone H2B type 1 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1_DANRE (Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1_CHICK (Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1_BOVIN (Histone H2B type 1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1O_HUMAN (Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1N_HUMAN (Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1M_MOUSE (Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1M_HUMAN (Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125
The following BLAST results are available for this feature:
BLAST of CX078369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B2E_HUMAN4.005e-3086.67Histone H2B type 2-E OS=Homo sapiens GN=HIST2H2BE ... [more]
H2B2B_MOUSE4.005e-3086.67Histone H2B type 2-B OS=Mus musculus GN=Hist2h2bb ... [more]
H2B1_PONAB4.005e-3086.67Histone H2B type 1 OS=Pongo abelii PE=2 SV=3[more]
H2B1_DANRE4.005e-3086.67Histone H2B 1/2 OS=Danio rerio GN=zgc:112234 PE=2 ... [more]
H2B1_CHICK4.005e-3086.67Histone H2B 1/2/3/4/6 OS=Gallus gallus GN=H2B-I PE... [more]
H2B1_BOVIN4.005e-3086.67Histone H2B type 1 OS=Bos taurus PE=1 SV=2[more]
H2B1O_HUMAN4.005e-3086.67Histone H2B type 1-O OS=Homo sapiens GN=HIST1H2BO ... [more]
H2B1N_HUMAN4.005e-3086.67Histone H2B type 1-N OS=Homo sapiens GN=HIST1H2BN ... [more]
H2B1M_MOUSE4.005e-3086.67Histone H2B type 1-M OS=Mus musculus GN=Hist1h2bm ... [more]
H2B1M_HUMAN4.005e-3086.67Histone H2B type 1-M OS=Homo sapiens GN=HIST1H2BM ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8F07-L14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078369 ID=CX078369; Name=CX078369; organism=Citrus sinensis; type=EST; length=450bp
CCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCAT
CAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGT
ACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGA
CTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAA
AGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCG
GTGGATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAA
TTTTACTAGATGAAGTCGTTTTATGTTTTTTGTTTTTAAATCTTTGTTGG
ATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCTGATCCGGGTG
ATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATATGATTTAAGAA
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