CX078369 | Citrus Genome Database

Overview


Name	CX078369
Unique Name	CX078369
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	450

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1H_MOUSE (Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1

Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1H_HUMAN (Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1

Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1D_HUMAN (Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1

Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1C_MOUSE (Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h2bc PE=1 SV=3)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1

Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1B_HUMAN (Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB PE=1 SV=2)

HSP 1 Score: 130.183 bits (326), Expect = 4.005e-30
Identity = 65/75 (86.67%), Postives = 71/75 (94.67%), Query Frame = 1

Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 125

[Close]

BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1K_MOUSE (Histone H2B type 1-K OS=Mus musculus GN=Hist1h2bk PE=1 SV=3)

HSP 1 Score: 129.798 bits (325), Expect = 5.230e-30
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1

Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125

[Close]

BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B_SALTR (Histone H2B OS=Salmo trutta PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 8.921e-30
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1

Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 PDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123

[Close]

BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B_ONCMY (Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 8.921e-30
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1

Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A E+SRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   49 PDTGISSKAMGIMNSFVNDIFERIAGESSRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 123

[Close]

BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1K_MACFA (Histone H2B type 1-K OS=Macaca fascicularis GN=HIST1H2BK PE=2 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 8.921e-30
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1

Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125

[Close]

BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1K_HUMAN (Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 8.921e-30
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1

Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125

The following BLAST results are available for this feature:

BLAST of CX078369 vs. ExPASy Swiss-Prot

BLAST of CX078369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204


Match Name	E-value	Identity	Description
H2B1H_MOUSE	4.005e-30	86.67	Histone H2B type 1-H OS=Mus musculus GN=Hist1h2bh ...	[more]
H2B1H_HUMAN	4.005e-30	86.67	Histone H2B type 1-H OS=Homo sapiens GN=HIST1H2BH ...	[more]
H2B1D_HUMAN	4.005e-30	86.67	Histone H2B type 1-D OS=Homo sapiens GN=HIST1H2BD ...	[more]
H2B1C_MOUSE	4.005e-30	86.67	Histone H2B type 1-C/E/G OS=Mus musculus GN=Hist1h...	[more]
H2B1B_HUMAN	4.005e-30	86.67	Histone H2B type 1-B OS=Homo sapiens GN=HIST1H2BB ...	[more]
H2B1K_MOUSE	5.230e-30	85.33	Histone H2B type 1-K OS=Mus musculus GN=Hist1h2bk ...	[more]
H2B_SALTR	8.921e-30	85.33	Histone H2B OS=Salmo trutta PE=1 SV=2	[more]
H2B_ONCMY	8.921e-30	85.33	Histone H2B OS=Oncorhynchus mykiss PE=1 SV=2	[more]
H2B1K_MACFA	8.921e-30	85.33	Histone H2B type 1-K OS=Macaca fascicularis GN=HIS...	[more]
H2B1K_HUMAN	8.921e-30	85.33	Histone H2B type 1-K OS=Homo sapiens GN=HIST1H2BK ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_8F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8F07-L14-1-6.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX078369 ID=CX078369; Name=CX078369; organism=Citrus sinensis; type=EST; length=450bp
CCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCAT
CAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGT
ACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGA
CTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAA
AGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCG
GTGGATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAA
TTTTACTAGATGAAGTCGTTTTATGTTTTTTGTTTTTAAATCTTTGTTGG
ATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCTGATCCGGGTG
ATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATATGATTTAAGAA