CX078369

Overview
NameCX078369
Unique NameCX078369
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1K_BOVIN (Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 8.921e-30
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1J_HUMAN (Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 8.921e-30
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B12_XENLA (Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2)

HSP 1 Score: 129.028 bits (323), Expect = 8.921e-30
Identity = 64/75 (85.33%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B3_TIGCA (Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.165e-29
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   48 PDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B2E_MOUSE (Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 1.165e-29
Identity = 63/75 (84.00%), Postives = 71/75 (94.67%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQT+VRL+LPGELAKHAVSEGTKAVTK+TS+
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIANEASRLAHYNKRSTITSREIQTSVRLLLPGELAKHAVSEGTKAVTKYTSA 125
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1_TIGCA (Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 1.165e-29
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   48 PDTGISSKAMSIMNSFVNDIFERIASEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B1C_HUMAN (Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HIST1H2BC PE=1 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 1.165e-29
Identity = 64/74 (86.49%), Postives = 70/74 (94.59%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTS 222
            PD GISSKAMGIMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TS
Sbjct:   51 PDTGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTS 124
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B_PLADU (Histone H2B OS=Platynereis dumerilii PE=3 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.522e-29
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   48 PDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B_LITVA (Histone H2B (Fragments) OS=Litopenaeus vannamei PE=1 SV=2)

HSP 1 Score: 128.257 bits (321), Expect = 1.522e-29
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   41 PDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 115
[Close]
BLAST of CX078369 vs. ExPASy Swiss-Prot
Match: H2B_DROYA (Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 1.522e-29
Identity = 64/75 (85.33%), Postives = 70/75 (93.33%), Query Frame = 1 
Query:    1 PDIGISSKAMGIMNSFINDIFEKLAQEASRLARYNKKPTITSREIQTAVRLVLPGELAKHAVSEGTKAVTKFTSS 225
            PD GISSKAM IMNSF+NDIFE++A EASRLA YNK+ TITSREIQTAVRL+LPGELAKHAVSEGTKAVTK+TSS
Sbjct:   48 PDTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGELAKHAVSEGTKAVTKYTSS 122
The following BLAST results are available for this feature:
BLAST of CX078369 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 204
Match NameE-valueIdentityDescription
H2B1K_BOVIN8.921e-3085.33Histone H2B type 1-K OS=Bos taurus GN=HIST1H2BK PE... [more]
H2B1J_HUMAN8.921e-3085.33Histone H2B type 1-J OS=Homo sapiens GN=HIST1H2BJ ... [more]
H2B12_XENLA8.921e-3085.33Histone H2B 1.2 OS=Xenopus laevis PE=1 SV=2[more]
H2B3_TIGCA1.165e-2985.33Histone H2B.3 OS=Tigriopus californicus PE=3 SV=2[more]
H2B2E_MOUSE1.165e-2984.00Histone H2B type 2-E OS=Mus musculus GN=Hist2h2be ... [more]
H2B1_TIGCA1.165e-2985.33Histone H2B.1/H2B.2 OS=Tigriopus californicus PE=3... [more]
H2B1C_HUMAN1.165e-2986.49Histone H2B type 1-C/E/F/G/I OS=Homo sapiens GN=HI... [more]
H2B_PLADU1.522e-2985.33Histone H2B OS=Platynereis dumerilii PE=3 SV=2[more]
H2B_LITVA1.522e-2985.33Histone H2B (Fragments) OS=Litopenaeus vannamei PE... [more]
H2B_DROYA1.522e-2985.33Histone H2B OS=Drosophila yakuba GN=His2B PE=3 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8F07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8F07-L14-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078369 ID=CX078369; Name=CX078369; organism=Citrus sinensis; type=EST; length=450bp
CCCGATATCGGAATCTCGAGCAAGGCCATGGGAATCATGAACAGTTTCAT
CAACGATATTTTCGAGAAGCTTGCCCAGGAAGCTTCTAGGCTTGCAAGGT
ACAATAAGAAGCCGACGATTACATCTCGGGAAATTCAGACCGCTGTGAGA
CTTGTACTTCCTGGTGAGCTGGCTAAGCACGCTGTTTCTGAGGGTACCAA
AGCTGTTACTAAGTTTACTTCTTCTTGAAGGAAGTTTGTTGCATCGGTCG
GTGGATTCGGGTGTTATGTGATTTGTGTAGTTAGTAGTTTAGGCCTTTAA
TTTTACTAGATGAAGTCGTTTTATGTTTTTTGTTTTTAAATCTTTGTTGG
ATTTTTAGGGTTTGTTTGGATGTACTAGAAATTTGGACCTGATCCGGGTG
ATGTGCATGTTCATTATGTTAGAATATGAAAATGAAATATGATTTAAGAA
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