CX078354

Overview
NameCX078354
Unique NameCX078354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_RANSY (60S acidic ribosomal protein P0 OS=Rana sylvatica GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.324e-58
Identity = 115/225 (51.11%), Postives = 152/225 (67.56%), Query Frame = 2
Query:  173 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N+A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q VY+NGS+YSPEVLD++ED L  +F   V  + ++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NSALEKLLPHIKGNVGFVFTKEDLAEVRDMLLANKVPASARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVYDNGSIYSPEVLDITEDALRARFLEGVRNIASV 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_ICTPU (60S acidic ribosomal protein P0 OS=Ictalurus punctatus GN=rplp0 PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 4.324e-58
Identity = 116/225 (51.56%), Postives = 151/225 (67.11%), Query Frame = 2
Query:  173 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +  +A  K  Y  K+ QLL +Y +  +  ADNVGS Q+Q IR  LRG ++VLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LIR GDKVG+SEA LL  L I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F   V  + ++
Sbjct:    3 REDRATWKSNYFLKIIQLLNDYPKCFIVGADNVGSKQMQTIRLSLRGKAIVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLPEVRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIRPGDKVGASEATLLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLEGVRNIASV 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_CHICK (60S acidic ribosomal protein P0 OS=Gallus gallus GN=RPLP0 PE=2 SV=1)

HSP 1 Score: 222.246 bits (565), Expect = 2.803e-57
Identity = 115/225 (51.11%), Postives = 152/225 (67.56%), Query Frame = 2
Query:  173 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +  +A  K  Y  K+ QLL++Y +  V  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP DV VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L ++F   V  V ++
Sbjct:    3 REDRATWKSNYFMKIIQLLDDYPKCFVVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCDVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHKRFLEGVRNVASV 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_HUMAN (60S acidic ribosomal protein P0 OS=Homo sapiens GN=RPLP0 PE=1 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.391e-56
Identity = 113/225 (50.22%), Postives = 151/225 (67.11%), Query Frame = 2
Query:  173 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASV 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_BOVIN (60S acidic ribosomal protein P0 OS=Bos taurus GN=RPLP0 PE=2 SV=3)

HSP 1 Score: 219.935 bits (559), Expect = 1.391e-56
Identity = 113/225 (50.22%), Postives = 151/225 (67.11%), Query Frame = 2
Query:  173 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASV 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_PIG (60S acidic ribosomal protein P0 OS=Sus scrofa GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 219.55 bits (558), Expect = 1.817e-56
Identity = 112/225 (49.78%), Postives = 151/225 (67.11%), Query Frame = 2
Query:  173 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+Y+PEVLD++E+ L  +F   V  V ++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEETLHSRFLEGVRNVASV 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_CAEEL (60S acidic ribosomal protein P0 OS=Caenorhabditis elegans GN=rpa-0 PE=1 SV=3)

HSP 1 Score: 219.55 bits (558), Expect = 1.817e-56
Identity = 109/227 (48.02%), Postives = 156/227 (68.72%), Query Frame = 2
Query:  167 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +V+  ++  K  Y  KL +L EEY + L+   DNVGS Q+Q IR+ +RG + +LMGKNTM+++ +R H  K  N +   L+P +  NVG +FTK DL            GAPA+ G +AP DV +PP NTG+ P +TSFFQ L IPTKI +GT+EI+  V LI++GDKVG+SE+ALL  LG+ PFSYGLVV+ VY++G++Y+PEVLD++ ++L ++F S V  V ++
Sbjct:    1 MVREDRSTWKANYFTKLVELFEEYPKCLLVGVDNVGSKQMQEIRQAMRGHAEILMGKNTMIRKALRGHLGK--NPSLEKLLPHIVENVGFVFTKEDLGEIRSKLLENRKGAPAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGASESALLNMLGVTPFSYGLVVRQVYDDGTLYTPEVLDMTTEELRKRFLSGVRNVASV 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_RAT (60S acidic ribosomal protein P0 OS=Rattus norvegicus GN=Rplp0 PE=1 SV=2)

HSP 1 Score: 219.164 bits (557), Expect = 2.372e-56
Identity = 113/225 (50.22%), Postives = 150/225 (66.67%), Query Frame = 2
Query:  173 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+YSPEVLD++E  L  +F   V  V ++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYSPEVLDITEQALHTRFLEGVRNVASV 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_MOUSE (60S acidic ribosomal protein P0 OS=Mus musculus GN=Rplp0 PE=1 SV=3)

HSP 1 Score: 218.394 bits (555), Expect = 4.047e-56
Identity = 112/225 (49.78%), Postives = 150/225 (66.67%), Query Frame = 2
Query:  173 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GL++Q V++NGS+Y+PEVLD++E  L  +F   V  V ++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIRGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLIIQQVFDNGSIYNPEVLDITEQALHSRFLEGVRNVASV 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_DANRE (60S acidic ribosomal protein P0 OS=Danio rerio GN=rplp0 PE=2 SV=1)

HSP 1 Score: 218.009 bits (554), Expect = 5.285e-56
Identity = 115/228 (50.44%), Postives = 152/228 (66.67%), Query Frame = 2
Query:  173 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAAL---LAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +  +A  K  Y  K+ QLL+++ +  +  ADNVGS Q+Q IR  LRG +VVLMGKNTMM++ IR H E   N A   L+P ++GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA L   L  L I PFSYGL++Q VY+NGSVYSPEVLD++ED L ++F   V  + ++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDFPKCFIVGADNVGSKQMQTIRLSLRGKAVVLMGKNTMMRKAIRGHLEN--NPALERLLPHIRGNVGFVFTKEDLTEVRDLLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKPGDKVGASEATLLNMLNMLNISPFSYGLIIQQVYDNGSVYSPEVLDITEDALHKRFLKGVRNIASV 228          
The following BLAST results are available for this feature:
BLAST of CX078354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RLA0_RANSY4.324e-5851.1160S acidic ribosomal protein P0 OS=Rana sylvatica ... [more]
RLA0_ICTPU4.324e-5851.5660S acidic ribosomal protein P0 OS=Ictalurus punct... [more]
RLA0_CHICK2.803e-5751.1160S acidic ribosomal protein P0 OS=Gallus gallus G... [more]
RLA0_HUMAN1.391e-5650.2260S acidic ribosomal protein P0 OS=Homo sapiens GN... [more]
RLA0_BOVIN1.391e-5650.2260S acidic ribosomal protein P0 OS=Bos taurus GN=R... [more]
RLA0_PIG1.817e-5649.7860S acidic ribosomal protein P0 OS=Sus scrofa GN=R... [more]
RLA0_CAEEL1.817e-5648.0260S acidic ribosomal protein P0 OS=Caenorhabditis ... [more]
RLA0_RAT2.372e-5650.2260S acidic ribosomal protein P0 OS=Rattus norvegic... [more]
RLA0_MOUSE4.047e-5649.7860S acidic ribosomal protein P0 OS=Mus musculus GN... [more]
RLA0_DANRE5.285e-5650.4460S acidic ribosomal protein P0 OS=Danio rerio GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E11-J22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078354 ID=CX078354; Name=CX078354; organism=Citrus sinensis; type=EST; length=847bp
TTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTTGAGGTTAAAGA
GACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTGCTTCGTCTTGG
CCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAACAAAAGTAGAA
CCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAAGATCG
CGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAATATTG
GTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAGAACATTCGTAG
GGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATGATGA
AGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTC
AATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGG
TGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTC
CTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGC
AACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACAT
TCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCACACCTGTGGAGC
TTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTGCTTGCA
AAGCTTGGGATTAGACCCTTCTCTTATGGTCTTGTTGTCCAGTCTGTCTA
TGAAAACGGTTCCGTCTACAGCCCAGAGGTCCTTGACCTGTCTGAAGATG
ACCTAGTGGAGAAGTTCGCCTCAAGTGTATCAATGGTCACCGCTCTG
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