CX078354

Overview
NameCX078354
Unique NameCX078354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0L_HUMAN (60S acidic ribosomal protein P0-like OS=Homo sapiens PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.008e-55
Identity = 113/225 (50.22%), Postives = 148/225 (65.78%), Query Frame = 2
Query:  173 KASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +  +A  K  Y  K+ QLL++Y +  +  ADNVGS Q+Q IR  LRG  VVLMGKNTMM++ IR H E   N A   L+P + GNVG +FTK DL             A AR G +AP +V VP  NTGL P +TSFFQ L I TKI++GT+EI++ V+LI+ GDKVG+SEA LL  L I PFS+GLV+Q V++NGS+Y+PEVLD +E+ L  +F   V  V ++
Sbjct:    3 REDRATWKSNYFLKIIQLLDDYPKCFIVGADNVGSKQMQQIRMSLRGKVVVLMGKNTMMRKAIRGHLEN--NPALEKLLPHIWGNVGFVFTKEDLTEIRDMLLANKVPAAARAGAIAPCEVTVPAQNTGLGPEKTSFFQALGITTKISRGTIEILSDVQLIKTGDKVGASEATLLNMLNISPFSFGLVIQQVFDNGSIYNPEVLDKTEETLHSRFLEGVRNVASV 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_NEUCR (60S acidic ribosomal protein P0 OS=Neurospora crassa GN=crpp0 PE=2 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 6.047e-52
Identity = 99/222 (44.59%), Postives = 145/222 (65.32%), Query Frame = 2
Query:  182 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            K+  K  Y  KL  LLE+Y  I + + DNV S Q+  IR+ LRG++VVLMGKNTM++R ++     T    +  L+P ++GNVG +FT GDL             APAR G +AP DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +  +VLD+SE+ L++ F+++++ + +L
Sbjct:    4 KSANKAGYFDKLKGLLEDYRSIFIVSVDNVSSQQMHEIRQSLRGEAVVLMGKNTMVRRALKTFVADTPE--YERLLPFVKGNVGFVFTNGDLKEVRDKILANKVAAPARAGAIAPADVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSDVLDISEEQLLKAFSTAITTIASL 223          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_PODAN (60S acidic ribosomal protein P0 OS=Podospora anserina PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 2.298e-51
Identity = 100/222 (45.05%), Postives = 142/222 (63.96%), Query Frame = 2
Query:  182 KAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            K+  K  Y  KL  LLEEY  I + + DNV S Q+  IR+ LR   VVLMGKNTM++R ++       +  +  L+P ++GNVG +FT GDL             APAR G VAP+DV +P GNTG++P +TSFFQ L +PTKI +GT+EI T ++L+  G KVG SEA LL  L I PF+YG+ +  VY+ G+ +   VLD+SE+ L++ F+S+++ + A+
Sbjct:    4 KSANKAGYFDKLKGLLEEYKSIFIVSVDNVSSQQMHEIRQALRDQGVVLMGKNTMVRRALKTFL--VDSPEYERLLPFVKGNVGFVFTNGDLKEIRDKILANKVAAPARAGAVAPVDVWIPAGNTGMEPGKTSFFQALGVPTKIARGTIEITTDLKLVEAGAKVGPSEATLLNMLNISPFTYGMGIAQVYDQGNTFPSSVLDISEEQLLKAFSSAITTIAAV 223          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SCHPO (60S acidic ribosomal protein P0 OS=Schizosaccharomyces pombe GN=rpp0 PE=2 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 2.541e-50
Identity = 101/224 (45.09%), Postives = 141/224 (62.95%), Query Frame = 2
Query:  176 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            A   E K  Y  KL  L E+Y  + V   DNV S Q+  +R+ LRG + ++MGKNTM++R +R             L+P+++GNVG +FT  DL             APAR   +AP+DV VP GNTG++P +TSFFQ L IPTKI +GT+EI + V L+ K  KVG SEA LL  L I PF+YG+ V ++Y+ G+V+SPE+LD+SE+DL+    S+ S++TA+
Sbjct:    2 AISKESKAQYFEKLRSLFEKYNSLFVVNIDNVSSQQMHTVRKQLRGTAELIMGKNTMIRRAMRGIINDMPELE--RLLPVVRGNVGFVFTNADLKEVRETIIANVIAAPARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGPSEATLLNMLNISPFTYGMDVLTIYDQGNVFSPEILDVSEEDLIGHLLSAASIITAI 223          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_YEAST (60S acidic ribosomal protein P0 OS=Saccharomyces cerevisiae GN=RPP0 PE=1 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 6.258e-49
Identity = 100/220 (45.45%), Postives = 141/220 (64.09%), Query Frame = 2
Query:  188 EKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            EKK  Y AKL + LEEY  + V   DNV S Q+  +R+ LRG +VVLMGKNTM++R IR       +  F  L+P ++G VG +FT   L             APAR G VAP D+ V   NTG++P +TSFFQ L +PTKI +GT+EI++ V+++  G+KVG SEA+LL  L I PF++GL V  VY+NG V+   +LD+++++LV  F S+VS + ++
Sbjct:    6 EKKAEYFAKLREYLEEYKSLFVVGVDNVSSQQMHEVRKELRGRAVVLMGKNTMVRRAIRGFLSDLPD--FEKLLPFVKGYVGFVFTNEPLTEIKNVIVSNRVAAPARAGAVAPEDIWVRAVNTGMEPGKTSFFQALGVPTKIARGTIEIVSDVKVVDAGNKVGQSEASLLNLLNISPFTFGLTVVQVYDNGQVFPSSILDITDEELVSHFVSAVSTIASI 223          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_PLAF8 (60S acidic ribosomal protein P0 OS=Plasmodium falciparum (isolate 7G8) GN=RPLP0 PE=2 SV=2)

HSP 1 Score: 191.43 bits (485), Expect = 5.298e-48
Identity = 99/228 (43.42%), Postives = 151/228 (66.23%), Query Frame = 2
Query:  167 VVKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGA-PARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            + K SK +KK  Y  KL  L+++Y++IL+   DNVGSNQ+ ++R+ LRG + +LMGKNT ++  ++ + +         L+PL++ N+G +F K DL             + PAR+G++APIDV +PPG TG+DPS TSF + L I TKI KG +EI   V LI++G+KV +S A LL K  + P SYG+ V++VY++G +Y  +VLD++++D++EKF+  VS V AL
Sbjct:    1 MAKLSKQQKKQMYIEKLSSLIQQYSKILIVHVDNVGSNQMASVRKSLRGKATILMGKNTRIRTALKKNLQAVPQIE--KLLPLVKLNMGFVFCKDDLSEIRNIILDNKSSSHPARLGVIAPIDVFIPPGPTGMDPSHTSFLESLGISTKIVKGQIEIQEHVHLIKQGEKVTASSATLLRKFNMNP-SYGVDVRTVYDDGVIYDAKVLDITDEDILEKFSKGVSNVAAL 225          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_EIMTE (60S acidic ribosomal protein P0 OS=Eimeria tenella PE=2 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 5.857e-47
Identity = 99/221 (44.80%), Postives = 141/221 (63.80%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            A K+  Y  +L QL+ E+ ++LV +AD+VGS QL  IR  LRG + VLMGKNT ++  +R   ++        L+PL++ NVG IF + D              APA+ G+ AP DV +P G TG+DP  T FFQ L I TKI KG +EI   V+LIR+G++V +S A LL KL ++PF+YGL V+ VY+NGSVYS  VLD++++ ++E FA+  + V A+
Sbjct:    6 AAKRREYFPRLLQLVLEHPRVLVVSADHVGSKQLAGIRVALRGQATVLMGKNTKIRTALRQQLQQ--QPQLQALLPLVRLNVGFIFCRADPAAVRAVVQQHKVPAPAKQGVTAPTDVFIPAGPTGMDPGSTGFFQALGISTKIVKGQIEIQQAVQLIRRGERVSASAATLLHKLSVKPFTYGLKVEHVYDNGSVYSASVLDITDEQILEAFAAGAANVAAV 224          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_DICDI (60S acidic ribosomal protein P0 OS=Dictyostelium discoideum GN=rplp0 PE=1 SV=2)

HSP 1 Score: 175.637 bits (444), Expect = 3.008e-43
Identity = 93/221 (42.08%), Postives = 138/221 (62.44%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +++K  +  K  +L   Y +++VA AD VGS+QLQ IR+ +RG   VLMGK TM+++ IR  A+       LN    L+ N  +IF K ++            GAPA+ G+ AP DV++P G TG++P+QTSF Q L I TKIN+G ++I+  V +I+ G KVG+SEA LL KL I+PF+YGL  + +Y+ G+ YSP +   SE+DL+ KF   +  + A+
Sbjct:    6 SKRKNVFIEKATKLFTTYDKMIVAEADFVGSSQLQKIRKSIRGIGAVLMGKKTMIRKVIRDLADSKPELDALNTY--LKQNTCIIFCKDNIAEVKRVINTQRVGAPAKAGVFAPNDVIIPAGPTGMEPTQTSFLQDLKIATKINRGQIDIVNEVHIIKTGQKVGASEATLLQKLNIKPFTYGLEPKIIYDAGACYSPSI---SEEDLINKFKQGIFNIAAI 221          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_TRYCR (60S acidic ribosomal protein P0 OS=Trypanosoma cruzi PE=2 SV=2)

HSP 1 Score: 165.622 bits (418), Expect = 3.113e-40
Identity = 97/231 (41.99%), Postives = 137/231 (59.31%), Query Frame = 2
Query:  179 SKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLI-------PLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKF-ASSVSMVTAL 847
            S +E K  Y+ +    L +Y ++L    DNV S Q+ ++RR LRG   ++MGK T+ K+ +   AE    +A+  L+        LL GN  LIFT  ++             APARVG +AP DV+VP GNTG++P  TSFFQ LNI TKI KGTVEI++  +++  GD+V +S A LL KL I PF Y + VQSV++ G ++  E L ++ DD+VEK+    +S V AL
Sbjct:    3 SVSEAKREYEERFNGCLTKYGRVLFCLMDNVRSQQVHDVRRDLRGLGELVMGKKTLQKKIVERRAEDKKASAYDKLLYNTCIEKKLLCGNTALIFTNEEIPVITAVLDKHRVQAPARVGAIAPCDVIVPAGNTGMEPKATSFFQALNIATKIAKGTVEIVSDKKVLSVGDRVDNSTATLLQKLDISPFYYQVEVQSVWDRGMLFLREDLSIT-DDVVEKYLLEGISNVAAL 232          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_LEICH (60S acidic ribosomal protein P0 OS=Leishmania chagasi GN=LCP0 PE=3 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 6.075e-36
Identity = 89/225 (39.56%), Postives = 127/225 (56.44%), Query Frame = 2
Query:  194 KIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIP-------LLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            K  Y+ +L   L +Y+ +L    DNV S Q+ ++RRG RG +  +MGK T+  + +   A+    +              LL GN GLIFT   +             APARVG + P DVVVP G+TG++P+QTSFFQ LNI TKI KG VEI+T  +++  GDKV +S A LL KL I PF Y + V SV++ G +++ E L ++ED + +     +S V A+
Sbjct:    8 KREYEERLVDCLTKYSCVLFVGMDNVRSQQVHDVRRGCRGKAEFIMGKKTLQAKIVEKRAQAKDASPEAKPFNDQCEEYNLLSGNTGLIFTNNAVQEITSVLDGHRVKAPARVGAI-PCDVVVPAGSTGMEPTQTSFFQALNIATKIAKGMVEIVTEKKVLSVGDKVDNSTATLLQKLNISPFYYQVNVLSVWDRGVLFTREDLMMTEDMVEKMLMEGLSNVAAM 231          
The following BLAST results are available for this feature:
BLAST of CX078354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RLA0L_HUMAN2.008e-5550.2260S acidic ribosomal protein P0-like OS=Homo sapie... [more]
RLA0_NEUCR6.047e-5244.5960S acidic ribosomal protein P0 OS=Neurospora cras... [more]
RLA0_PODAN2.298e-5145.0560S acidic ribosomal protein P0 OS=Podospora anser... [more]
RLA0_SCHPO2.541e-5045.0960S acidic ribosomal protein P0 OS=Schizosaccharom... [more]
RLA0_YEAST6.258e-4945.4560S acidic ribosomal protein P0 OS=Saccharomyces c... [more]
RLA0_PLAF85.298e-4843.4260S acidic ribosomal protein P0 OS=Plasmodium falc... [more]
RLA0_EIMTE5.857e-4744.8060S acidic ribosomal protein P0 OS=Eimeria tenella... [more]
RLA0_DICDI3.008e-4342.0860S acidic ribosomal protein P0 OS=Dictyostelium d... [more]
RLA0_TRYCR3.113e-4041.9960S acidic ribosomal protein P0 OS=Trypanosoma cru... [more]
RLA0_LEICH6.075e-3639.5660S acidic ribosomal protein P0 OS=Leishmania chag... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E11-J22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078354 ID=CX078354; Name=CX078354; organism=Citrus sinensis; type=EST; length=847bp
TTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTTGAGGTTAAAGA
GACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTGCTTCGTCTTGG
CCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAACAAAAGTAGAA
CCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAAGATCG
CGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAATATTG
GTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAGAACATTCGTAG
GGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATGATGA
AGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTC
AATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGG
TGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTC
CTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGC
AACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACAT
TCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCACACCTGTGGAGC
TTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTGCTTGCA
AAGCTTGGGATTAGACCCTTCTCTTATGGTCTTGTTGTCCAGTCTGTCTA
TGAAAACGGTTCCGTCTACAGCCCAGAGGTCCTTGACCTGTCTGAAGATG
ACCTAGTGGAGAAGTTCGCCTCAAGTGTATCAATGGTCACCGCTCTG
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