CX078354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_HALVO (Acidic ribosomal protein P0 homolog OS=Halobacterium volcanii GN=rplP0 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 3.956e-19 Identity = 61/213 (28.64%), Postives = 99/213 (46.48%), Query Frame = 2 Query: 212 KLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847 +L +E Y + V + S QLQ++RR L G + V M +NT++ R + N F L + G V LI T + AP G VAP D+V+P G+TG+DP Q + +I G++ + ++ +G++V A +LA+LGI P GL ++ V+ G ++ P+ L + D+ S+ T L Sbjct: 22 ELVDFIESYESVGVVGVAGIPSRQLQSMRRELHGSAAVRMSRNTLVNRAL-----DEVNDGFEELKEYIAGQVALIGTNDNPFALFKELEASKTPAPINAGEVAPNDIVIPEGDTGVDPGPFVGELQQVGASARIMDGSIMVTEDSNVLSEGEEVSEELANVLAELGIEPKEVGLDLRGVFSEGVLFEPDELAIDVDEYRADIQSASPAATNL 229
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_PYRAB (Acidic ribosomal protein P0 homolog OS=Pyrococcus abyssi GN=rplP0 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19 Identity = 62/214 (28.97%), Postives = 105/214 (49.07%), Query Frame = 2 Query: 176 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVL-MGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVE 811 A AE K +L L++ Y I + ++ + L +RR +R + +L + +NT+++ I+ A++ G L + G++ T + APA+ G V P DVV+P G T L P Q + IP +I +G V I +++ G+ + A +L LGI+P GL V +VYE+G VY+P+VL + E + ++ Sbjct: 2 AHVAEWKKKEVEELANLIKSYPVIALVDVSSMPAYPLSQMRRLIRENGGLLRVSRNTLIELAIKKAAQELGKPELEKLAEYIDRGAGILVTNMNPFKLYKFLQQNRQPAPAKPGAVVPKDVVIPAGPTPLAPGPIVGQMQAMGIPARIERGKVTIQKDTTVLKAGEVITPELANILNALGIQPLEVGLDVLAVYEDGIVYTPDVLAIDEQEYID 215
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_METS3 (Acidic ribosomal protein P0 homolog OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rplP0 PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.748e-19 Identity = 58/209 (27.75%), Postives = 107/209 (51.20%), Query Frame = 2 Query: 176 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSED 799 A AE K +L L+++Y I + N+ + QLQ +R+ L +V+ M K ++ + N ++L ++G V +I T+ + APA+ G +A D+V+P G+TG +P Q + IP KI+KG + + L+ G++V ++ A+ L+++ I P G+ +++VYE ++Y+ EVL + E+ Sbjct: 2 AHVAEWKKEEVNELKSLIDKYDVIGIVDLLNIPAKQLQEMRKSLHNKAVIRMSKKNLIDLALEDCNASKNN--IVDLSEHMEGQVAVIATEMNPFKLYKILEDSKTSAPAKPGAIATDDIVIPEGDTGFEPGPFLGELQQVGIPAKIDKGKIVVSKETVLVEAGEEVSAAVASTLSRMDINPMEVGIDLRAVYEEEAIYTSEVLAIDEE 208
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_METST (Acidic ribosomal protein P0 homolog OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rplP0 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 1.963e-18 Identity = 54/207 (26.09%), Postives = 106/207 (51.21%), Query Frame = 2 Query: 209 AKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASS 826 A+L L + I + ++ + QLQ +R+ L ++++ M + K I++ E + L L+G ++FTK + APA+ G +AP D+VVP G+T P Q + IP KI+KG++ + +++ +G+++ + A +L KL I P G+ + +V E ++Y+ +VL + E++ ++ A++ Sbjct: 13 AELEDLTNSHEIIGIVNLADIPAKQLQTMRKSLGDNAILKMSR----KNFIKIALENSDKEEVEGLADYLEGQPAMVFTKMNPFKLFKILEDSKTEAPAKAGSIAPADIVVPAGDTSFPPGPILGELQQVGIPAKIDKGSIVVTDDAKIVDEGEEIPKAVADILTKLEIHPMEVGIDLLAVCEGDTIYTADVLAIDEEETIQTLANA 215
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_THEGJ (Acidic ribosomal protein P0 homolog OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rplP0 PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 3.349e-18 Identity = 58/212 (27.36%), Postives = 102/212 (48.11%), Query Frame = 2 Query: 176 ASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLV 808 A AE K +L ++++ + I + V + L +R LRG +++ + +NT+++ I+ A++ L ++G ++ T+ + APA+ G V P DVV+P G T L P Q L IP +I KG V I +++ G+ + A +L LGI P GL + + YE+ +Y+P+VL + E + + Sbjct: 2 AHVAEWKKKEVEELTKIIKSHPVIALVDVAGVPAYPLSKMRDKLRGKALLRVSRNTLIELAIKRAAQELNKPDLEKLADYIEGGAAILATEMNPFKLYKLLEESKTPAPAKPGAVVPKDVVIPAGPTSLAPGPLVGEMQALGIPARIEKGKVTIQKDYTVLKAGEVITEQLARILNALGIEPLEVGLNLLAAYEDDIIYTPDVLAIDEQEYI 213
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_HALMA (50S ribosomal protein L10E OS=Haloarcula marismortui GN=rplP0 PE=1 SV=2) HSP 1 Score: 92.0485 bits (227), Expect = 4.374e-18 Identity = 54/197 (27.41%), Postives = 103/197 (52.28%), Query Frame = 2 Query: 215 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDD 802 + +++E Y + V + S QLQ++RR L G + + + +NT+++R + + +L + G VGLI T + AP G VAP D+V+P G+TG+DP Q + +I +G++++++ ++ G++V + +L +LGI P GL +++V+ +G ++ PE L+L D+ Sbjct: 23 IVEMIESYESVGVVNIAGIPSRQLQDMRRDLHGTAELRVSRNTLLERAL-----DDVDDGLEDLNGYITGQVGLIGTDDNPFSLFQELEASKTPAPIGAGEVAPNDIVIPEGDTGVDPGPFVGELQSVGADARIQEGSIQVLSDSTVLDTGEEVSQELSNVLNELGIEPKEVGLDLRAVFADGVLFEPEELELDIDE 214
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_METKA (Acidic ribosomal protein P0 homolog OS=Methanopyrus kandleri GN=rplP0 PE=3 SV=2) HSP 1 Score: 88.9669 bits (219), Expect = 3.703e-17 Identity = 61/209 (29.19%), Postives = 103/209 (49.28%), Query Frame = 2 Query: 185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRG-DSVVLMGKNTMMKRTIRMHAEKTGNTAFLN-LIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDD 802 AE K +L +L++EY + + + + + QLQ IR LR D+++ M +NT+M+ + EK L L+ ++G V IFT D APA+ G +AP D+VVP G T +P S Q +P +I G V I L+++G+++ A +L KL I P G+ + ++ G+++ + L + D+ Sbjct: 18 AEWKRREVKELKELMDEYENVGLVDLEGIPAPQLQEIRAKLRERDTIIRMSRNTLMRIALE---EKLDERPELEPLLDYIEGPVAFIFTNLDPFKLYKLLEESKASAPAKPGDIAPEDIVVPEGPTPFEPGPIVSELQQAGLPAQIQDGKVVITKDTVLVKEGEEIDEKTAEILKKLEIEPMEVGVDIVAIVAEGTLFERDDLAIDFDE 223
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_PICTO (Acidic ribosomal protein P0 homolog OS=Picrophilus torridus GN=rplP0 PE=3 SV=1) HSP 1 Score: 85.8853 bits (211), Expect = 3.135e-16 Identity = 57/215 (26.51%), Postives = 100/215 (46.51%), Query Frame = 2 Query: 185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASS 826 A+ KI + L + + + + +N+ Q IR +R + + + + R +R+ E TG + L G V LI T APA+ G +A D+V+ P T P + S FQ +P I KG + I + V ++KGD + +A +L L I P + GL + + YE+G +++ +VL +S++ ++ AS+ Sbjct: 5 AQWKIDFVKNLENEINSRKVAAIVSIKGLRNNEFQKIRNSIRDKARIKVSR----ARLLRLAIENTGKNNIVKLKDYAHGQVALITTDESPKKIYDILEKSKTKAPAKGGEIAEEDIVIEPKETNFPPGPKISEFQKAGLPAAIEKGKIVIKSEVTFVKKGDVITREKALVLKDLEIYPITAGLDLIAAYEDGLIFNKDVLSISDEKIMSDLASA 215
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_ARCFU (Acidic ribosomal protein P0 homolog OS=Archaeoglobus fulgidus GN=rplP0 PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 2.032e-15 Identity = 56/227 (24.67%), Postives = 107/227 (47.14%), Query Frame = 2 Query: 170 VKASKAEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847 V+ S E K+ ++ +++ + + + NV + Q+Q IRR RG + + + KNT+++R + + G +L L L + +I + +P + V+P+DVVV G T + P + Q+ +P I KG V + +++ G+ V A L +L I+P GL V+++ ++G + +PE L + + ++E F + M L Sbjct: 4 VRGSPPEYKVRAVEEIKRMISSKPVVAIVSFRNVPAGQMQKIRREFRGKAEIKVVKNTLLERAL----DALGGD-YLKLKDYLGDQIAIITADENPFRLFRMIEDTKVPSPLKPNQVSPVDVVVNEGPTPIPPGPLMAELQMAGLPVAIEKGKVVVKATTTVVKAGEVVRPEVARALERLDIKPIKIGLDVKAMLDSGVILTPETLAIDTEKVLEDFQRAYQMALNL 225
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_METBU (Acidic ribosomal protein P0 homolog OS=Methanococcoides burtonii (strain DSM 6242) GN=rplP0 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.912e-15 Identity = 53/202 (26.24%), Postives = 95/202 (47.03%), Query Frame = 2 Query: 224 LLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASS 826 L+E Y V + + + QLQ++RR L+ +V+ + +N++ +R + ++ + + LIFTK + +P + G+VA D++V G T P Q IP I+ G V I + + G+ V AA+L +L I P GL +++V E GS+++P+VL + E+ + F + Sbjct: 24 LIESYPLFGVIGIEGIPAKQLQSMRRDLKDFAVLKVCRNSLTRRALDQSSDDVKK-----MDDYIDVQTALIFTKQNPFKLYKLLEKSKTPSPIKAGMVATSDIIVEKGPTSFPPGPILGDMQGAGIPAAIDGGKVVIKETKAVAKAGEVVSQKLAAMLTRLEIYPLEVGLDLRAVLEEGSIFTPDVLAIDEEQIFSNFVQA 220 The following BLAST results are available for this feature:
BLAST of CX078354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078354 ID=CX078354; Name=CX078354; organism=Citrus sinensis; type=EST; length=847bpback to top |