CX078354

Overview
NameCX078354
Unique NameCX078354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_METBF (Acidic ribosomal protein P0 homolog OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.537e-14
Identity = 48/195 (24.62%), Postives = 90/195 (46.15%), Query Frame = 2
Query:  215 LCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSE 796
            + +L++ +    +   + + + ++Q IRR L+  +V+ + +N++ +R +    E     +   +   L     L+FT                 +P + G +AP D++V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L KL I P   GL +++VY+NG++Y PE+L + E
Sbjct:   22 IMELIQSHKVFGMVGIEGILATKIQKIRRDLKDVAVLKVSRNSLTERALNQLGE-----SIPEMNKYLDKQTALVFTNESPFKLYKVLEQTKTPSPIKGGAIAPADIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVSQKLATMLTKLEIYPLIVGLDLRAVYDNGAIYEPELLAIDE 211          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_THEAC (Acidic ribosomal protein P0 homolog OS=Thermoplasma acidophilum GN=rplP0 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13
Identity = 58/217 (26.73%), Postives = 98/217 (45.16%), Query Frame = 2
Query:  221 QLLEEYTQIL-----VAAADNVG--SNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFASSVSMVTAL 847
            +L+ E TQ +     VA  D  G  + Q+Q+IR   RG   + + K T++ + +    E  G+     L     G + L+ +  +                 R G +AP D+V+ P  TG  P    + FQ + + T + KG + I      ++KG+ +   +A +L  L I+P   GL +  +Y  G VYS EVL L+ + +    A++ S   A+
Sbjct:   10 ELVNEITQRIKASRSVAIVDTAGIRTRQIQDIRGKNRGKINLKVIKKTLLFKAL----ENLGDEKLSKLKENSGGQIALLTSDLEPTEIYKIIESTFQKTAPRGGEIAPEDIVIQPMTTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKETVFVKKGETIPKDKAKILEMLEIKPLEVGLQLLGLYSEGVVYSKEVLSLTPERIANDMAAAFSQAKAI 222          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_METMA (Acidic ribosomal protein P0 homolog OS=Methanosarcina mazei GN=rplP0 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.902e-13
Identity = 48/193 (24.87%), Postives = 89/193 (46.11%), Query Frame = 2
Query:  221 QLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSE 796
            +L++ +    +   + + + ++Q IRR L+  +V+ + +NT+ +R +    E     +   +   L     LIFT                 +P + G +AP D++V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L+KL I P   GL +++ Y++G++Y PE+L + E
Sbjct:   24 ELIQSHKVFGMVRIEGILATKIQKIRRDLKDVAVLKVSRNTLTERALNQLGE-----SIPEMTRYLDNQTALIFTNESPFKLYKLLEQTKTPSPIKAGAIAPEDIIVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEAVPQKLATMLSKLEIYPLIVGLDLRAAYDDGTIYEPELLAVDE 211          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_THEVO (Acidic ribosomal protein P0 homolog OS=Thermoplasma volcanium GN=rplP0 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 52/211 (24.64%), Postives = 97/211 (45.97%), Query Frame = 2
Query:  191 KKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDDLVEKFA 820
            KK    ++L Q + +   + +     V + Q+Q+IR   R    + + K T++ + +    +   +     L     G + ++ ++ D              A  R G VAP D+ V P  TG  P    + FQ + + T + KG + I     L++KG+ +   +A ++A L I+P   GL +  +Y +G +YS +VL L+ + + E+ A
Sbjct:    7 KKKEIVSELAQDITKSKAVAIVDIKGVRTRQMQDIRAKNRDKVKIKVVKKTLLFKAL----DSINDEKLTKLKDATTGQIAVLTSQLDPTEIYQMVQATLTKASPRGGEVAPADITVEPMVTGFPPGPMMTEFQKVGLQTGVEKGKIAIKKEAVLVKKGEVIPKDKAKIMAMLDIKPLEVGLELLGLYSDGVLYSADVLSLTPEKIAEQMA 213          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULTO (Acidic ribosomal protein P0 homolog OS=Sulfolobus tokodaii GN=rplP0 PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.244e-13
Identity = 58/207 (28.02%), Postives = 91/207 (43.96%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDD 802
            A+ KI    +L Q L EY  I++A  +   +++L +IR+ +RG + + + KNT+        A K        L P L G    IFT  +                A  G  A  +VV+P G+TG+      S F  L I TK+  G + +     + + GD +      +L KLGI P    L ++  Y+NG +     L ++ DD
Sbjct:   14 AKWKIEEVKELEQKLREYHTIIIANIEGFPADKLHDIRKKMRGMAEIKVTKNTLFGI-----AAKNAGLDVSKLEPYLTGPNAFIFTNKNPFEIQLFLSKFKLKRYAMPGDKADEEVVIPAGDTGMPAGPALSIFGKLKIKTKVQDGKIHVTQDTVIAKPGDPIPPDAIPILQKLGIMPVHIKLNIKVAYDNGLIIPGNQLSINLDD 215          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_METAC (Acidic ribosomal protein P0 homolog OS=Methanosarcina acetivorans GN=rplP0 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.227e-13
Identity = 49/193 (25.39%), Postives = 87/193 (45.08%), Query Frame = 2
Query:  221 QLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQ-TSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSE 796
            +L++ +    +   + + + ++Q IRR L+  +V+ + +NT+ +R +    E         +   L     LIFT                 +P R G +AP D+ V  G T   P       Q   IP  I+ G V +     + + G+ V    A +L+KL I P   GL +++ Y++G++Y PE+L + E
Sbjct:   24 ELIQSHKVFGMVGIEGILATKMQKIRRDLKDVAVLKVSRNTLTERALNQLGE-----TIPGMKEYLDKQTALIFTNESPFKLYKLLEQTKTPSPIRGGAIAPADITVQKGPTSFPPGPILGELQSAGIPASIDAGKVAVKETKVVCKAGEVVPQKLATMLSKLEIYPLIVGLDLRAAYDDGTIYEPELLAVDE 211          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULIY (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 55/204 (26.96%), Postives = 91/204 (44.61%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLS 793
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K    +   L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGISTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLN 212          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULIN (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 55/204 (26.96%), Postives = 91/204 (44.61%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLS 793
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K    +   L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGISTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLN 212          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULIL (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.103e-12
Identity = 55/204 (26.96%), Postives = 91/204 (44.61%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLS 793
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K    +   L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGISTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLN 212          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULIM (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 55/204 (26.96%), Postives = 90/204 (44.12%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLS 793
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K        L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGINIEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLN 212          
The following BLAST results are available for this feature:
BLAST of CX078354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RLA0_METBF8.537e-1424.62Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]
RLA0_THEAC1.902e-1326.73Acidic ribosomal protein P0 homolog OS=Thermoplasm... [more]
RLA0_METMA1.902e-1324.87Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]
RLA0_THEVO3.244e-1324.64Acidic ribosomal protein P0 homolog OS=Thermoplasm... [more]
RLA0_SULTO3.244e-1328.02Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_METAC7.227e-1325.39Acidic ribosomal protein P0 homolog OS=Methanosarc... [more]
RLA0_SULIY2.103e-1226.96Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIN2.103e-1226.96Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIL2.103e-1226.96Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIM2.746e-1226.96Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E11-J22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078354 ID=CX078354; Name=CX078354; organism=Citrus sinensis; type=EST; length=847bp
TTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTTGAGGTTAAAGA
GACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTGCTTCGTCTTGG
CCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAACAAAAGTAGAA
CCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAAGATCG
CGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAATATTG
GTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAGAACATTCGTAG
GGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATGATGA
AGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTC
AATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGG
TGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTC
CTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGC
AACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACAT
TCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCACACCTGTGGAGC
TTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTGCTTGCA
AAGCTTGGGATTAGACCCTTCTCTTATGGTCTTGTTGTCCAGTCTGTCTA
TGAAAACGGTTCCGTCTACAGCCCAGAGGTCCTTGACCTGTCTGAAGATG
ACCTAGTGGAGAAGTTCGCCTCAAGTGTATCAATGGTCACCGCTCTG
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