CX078354
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULIK (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rplP0 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12 Identity = 55/204 (26.96%), Postives = 90/204 (44.12%), Query Frame = 2 Query: 185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLS 793 A K+ +L +L++ IL+ + + +++L IR+ LRG +++ + KNT+ K A K L L G IFTK + A G A +V++P G+TG+ S F L + TK+ G V ++ + + GD + + +L KLGI P L ++ Y G V E L L+ Sbjct: 14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGINIEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLN 212
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULIA (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.16.27) GN=rplP0 PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12 Identity = 55/204 (26.96%), Postives = 90/204 (44.12%), Query Frame = 2 Query: 185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLS 793 A K+ +L +L++ IL+ + + +++L IR+ LRG +++ + KNT+ K A K L L G IFTK + A G A +V++P G+TG+ S F L + TK+ G V ++ + + GD + + +L KLGI P L ++ Y G V E L L+ Sbjct: 14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGINTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLN 212
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULSO (Acidic ribosomal protein P0 homolog OS=Sulfolobus solfataricus GN=rplP0 PE=3 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11 Identity = 56/203 (27.59%), Postives = 87/203 (42.86%), Query Frame = 2 Query: 185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDL 790 A K+ +L +L++ IL+ + +++L IR+ LRG + + + KNT+ K A K L L G IFTK + A G A +VV+P G+TG+ S F L + TK+ G V ++ + + GD + + +L KLGI P L ++ Y G V E L L Sbjct: 14 ASWKLEEVKELTELIKNSNTILIGNLEGFPADKLHEIRKKLRGKATIKVTKNTLFKI-----AAKNAGIDIEKLEQYLTGPNVFIFTKDNPFITNMFFENYKLRRYAMPGDKAEEEVVIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPAEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAESLKL 211
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULAC (Acidic ribosomal protein P0 homolog OS=Sulfolobus acidocaldarius GN=rplP0 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11 Identity = 54/207 (26.09%), Postives = 93/207 (44.93%), Query Frame = 2 Query: 185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDD 802 A+ K+ A+L + L+ + I++A + +++L IR+ LRG + + + KN + ++ T L G IFT + A G A +VVVP G+TG+ S F L I TK+ G + I+ + + GD++ + +L KLGI P L ++ Y+NG + + L ++ DD Sbjct: 13 AKWKVDEVAELTEKLKTHKTIIIANIEGFPADKLHEIRKKLRGKADIKVTKNNLFNIALKNAGYDTKLFE-----SYLTGPNAFIFTDTNPFELQLFLSKFKLKRYALPGDKADEEVVVPAGDTGIAAGPMLSVFGKLKIKTKVQDGKIHILQDTTVAKPGDEIPADIVPILQKLGIMPVYVKLNIKIAYDNGVIIPGDKLSINLDD 214 The following BLAST results are available for this feature:
BLAST of CX078354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078354 ID=CX078354; Name=CX078354; organism=Citrus sinensis; type=EST; length=847bpback to top |