CX078354

Overview
NameCX078354
Unique NameCX078354
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length847
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULIK (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.746e-12
Identity = 55/204 (26.96%), Postives = 90/204 (44.12%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLS 793
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K        L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGINIEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLN 212          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULIA (Acidic ribosomal protein P0 homolog OS=Sulfolobus islandicus (strain M.16.27) GN=rplP0 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.684e-12
Identity = 55/204 (26.96%), Postives = 90/204 (44.12%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLS 793
            A  K+    +L +L++    IL+ + +   +++L  IR+ LRG +++ + KNT+ K      A K        L   L G    IFTK +                A  G  A  +V++P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L+
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGSLEGFPADKLHEIRKKLRGKAIIKVTKNTLFKI-----AAKNAGINTEKLEQYLTGPNVFIFTKDNPFLTNMFFENYKLRRYAMPGDKAEEEVIIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPTEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAENLKLN 212          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULSO (Acidic ribosomal protein P0 homolog OS=Sulfolobus solfataricus GN=rplP0 PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.044e-11
Identity = 56/203 (27.59%), Postives = 87/203 (42.86%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPSQT-SFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDL 790
            A  K+    +L +L++    IL+   +   +++L  IR+ LRG + + + KNT+ K      A K        L   L G    IFTK +                A  G  A  +VV+P G+TG+      S F  L + TK+  G V ++    + + GD + +    +L KLGI P    L ++  Y  G V   E L L
Sbjct:   14 ASWKLEEVKELTELIKNSNTILIGNLEGFPADKLHEIRKKLRGKATIKVTKNTLFKI-----AAKNAGIDIEKLEQYLTGPNVFIFTKDNPFITNMFFENYKLRRYAMPGDKAEEEVVIPAGDTGMPAGPILSVFGKLKVQTKVQDGKVHVVKDTVVAKPGDVIPAEALPILQKLGIMPVYVKLKIKVAYHEGLVIPAESLKL 211          
BLAST of CX078354 vs. ExPASy Swiss-Prot
Match: RLA0_SULAC (Acidic ribosomal protein P0 homolog OS=Sulfolobus acidocaldarius GN=rplP0 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.179e-11
Identity = 54/207 (26.09%), Postives = 93/207 (44.93%), Query Frame = 2
Query:  185 AEKKIAYDAKLCQLLEEYTQILVAAADNVGSNQLQNIRRGLRGDSVVLMGKNTMMKRTIRMHAEKTGNTAFLNLIPLLQGNVGLIFTKGDLXXXXXXXXXXXXGAPARVGLVAPIDVVVPPGNTGLDPS-QTSFFQVLNIPTKINKGTVEIITPVELIRKGDKVGSSEAALLAKLGIRPFSYGLVVQSVYENGSVYSPEVLDLSEDD 802
            A+ K+   A+L + L+ +  I++A  +   +++L  IR+ LRG + + + KN +    ++     T           L G    IFT  +                A  G  A  +VVVP G+TG+      S F  L I TK+  G + I+    + + GD++ +    +L KLGI P    L ++  Y+NG +   + L ++ DD
Sbjct:   13 AKWKVDEVAELTEKLKTHKTIIIANIEGFPADKLHEIRKKLRGKADIKVTKNNLFNIALKNAGYDTKLFE-----SYLTGPNAFIFTDTNPFELQLFLSKFKLKRYALPGDKADEEVVVPAGDTGIAAGPMLSVFGKLKIKTKVQDGKIHILQDTTVAKPGDEIPADIVPILQKLGIMPVYVKLNIKIAYDNGVIIPGDKLSINLDD 214          
The following BLAST results are available for this feature:
BLAST of CX078354 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RLA0_SULIK2.746e-1226.96Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULIA4.684e-1226.96Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULSO1.044e-1127.59Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]
RLA0_SULAC5.179e-1126.09Acidic ribosomal protein P0 homolog OS=Sulfolobus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8E11-J22-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078354 ID=CX078354; Name=CX078354; organism=Citrus sinensis; type=EST; length=847bp
TTTTCTTGTACACTTCTTTCACTCTCTTTGTATCTCGTTGAGGTTAAAGA
GACGGCAATTCCGCTGCTGTCCGCCTTGGCAAGCCGCTGCTTCGTCTTGG
CCCTCGATTTTGTATAAATTTACAACTTTTTACCACCAACAAAAGTAGAA
CCAAATCCACGAAATGGTAGTGAAAGCATCGAAGGCCGAGAAGAAGATCG
CGTACGACGCGAAGCTATGCCAGTTGCTGGAAGAGTACACCCAAATATTG
GTGGCGGCCGCCGACAACGTGGGGTCCAATCAACTCCAGAACATTCGTAG
GGGTCTGCGTGGAGACTCCGTTGTGCTCATGGGAAAGAACACTATGATGA
AGAGGACTATCAGAATGCACGCTGAGAAGACCGGTAACACTGCCTTTCTC
AATCTCATCCCCCTCCTTCAGGGCAATGTTGGGTTGATTTTCACAAAGGG
TGATTTGAAGGAAGTGAAAGAGGAGGTTGCTAAGTACAAGGTTGGAGCTC
CTGCTCGTGTTGGTTTGGTTGCTCCAATTGATGTGGTTGTTCCTCCCGGC
AACACAGGTCTCGACCCCTCCCAGACCTCCTTCTTCCAGGTGCTTAACAT
TCCCACCAAGATTAACAAGGGTACTGTTGAAATTATCACACCTGTGGAGC
TTATTAGGAAGGGTGACAAGGTGGGATCTTCTGAGGCAGCCCTGCTTGCA
AAGCTTGGGATTAGACCCTTCTCTTATGGTCTTGTTGTCCAGTCTGTCTA
TGAAAACGGTTCCGTCTACAGCCCAGAGGTCCTTGACCTGTCTGAAGATG
ACCTAGTGGAGAAGTTCGCCTCAAGTGTATCAATGGTCACCGCTCTG
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