CX078297

Overview
NameCX078297
Unique NameCX078297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078297 vs. ExPASy Swiss-Prot
Match: ML329_ARATH (MLP-like protein 329 OS=Arabidopsis thaliana GN=MLP329 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 42/150 (28.00%), Postives = 78/150 (52.00%), Query Frame = -2
Query:  141 SAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITY-ADGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLV-KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYI 584
            +  G    E+ +K SADK +   RD   LFP A  H  + + V +G+  +  ++++  Y  DG P  +V  E+ E +D+ N V+T++ ++G +++  K +  I   + K    +V K    +EK +DD P+PS    F      ++D+++
Sbjct:    2 ATSGTYVTEVPLKGSADKHYKRWRDENHLFPDAIGHHIQGVTVHDGEWDSHEAIKIWNYTCDGKP--EVFKERKE-IDDENMVITFRGLEGHVMEQLKVYDLIYQFSQKSPDDIVCKITMIWEKRTDDSPEPSNYMKFLKSVVADMDEHV 148          
BLAST of CX078297 vs. ExPASy Swiss-Prot
Match: IPRT1_CATRO (Probable intracellular pathogenesis-related protein T1 OS=Catharanthus roseus GN=PCKR3 PE=1 SV=2)

HSP 1 Score: 68.1662 bits (165), Expect = 4.144e-11
Identity = 43/152 (28.29%), Postives = 82/152 (53.95%), Query Frame = -2
Query:  141 GKLEVELEVKSS---ADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYADGSPIVKVSTEKIENVDEANKVVTYKVIDGD-LLKYYKAFKGIVSVNPKGEGSLVKWACEFE-KASDDVPDPSVI--KDFALKNFQEVDDYI 575
            G +  ++E+KSS   A  F   + D  TL  KA  +  KS+++L+GDG A G+++L+ + +G P+  V    +E +D+ N    Y ++DG+ L+   ++   ++ + P G GS+ K    F  KA  ++ +  +   K+ A +  + V+ Y+
Sbjct:    2 GVISYDMEIKSSLSAAKLFKAFVLDVGTLINKALPNVIKSVEILQGDGGA-GTIKLVHFGEGGPVPSVK-HHVEELDKDNMSYKYSIVDGEALMPGLQSISYVIKIEPSGHGSVCKHNTTFHFKAGSNINEDEIKAGKERAAEMIKAVEAYV 151          
BLAST of CX078297 vs. ExPASy Swiss-Prot
Match: ML328_ARATH (MLP-like protein 328 OS=Arabidopsis thaliana GN=MLP328 PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 40/150 (26.67%), Postives = 77/150 (51.33%), Query Frame = -2
Query:  141 SAGGKLEVELEVKSSADKFWGSIRDSTTLFPKAFSHDYKSIQVLEGDGKAPGSVRLITYA-DGSPIVKVSTEKIENVDEANKVVTYKVIDGDLLKYYKAFKGIVSVNPKGEGSLV-KWACEFEKASDDVPDPSVIKDFALKNFQEVDDYI 584
            +  G    E+ +K SA+K +   R    LFP A  H  + + + +G+  + G++++  Y  DG P  +V  E+ E +D+ N  VT++ ++G +++  K +  I     K    ++ K    +EK +DD+P+PS    F      ++DD++
Sbjct:    2 ATSGTYVTEVPLKGSAEKHYKRWRSENHLFPDAIGHHIQGVTIHDGEWDSHGAIKIWNYTCDGKP--EVFKERRE-IDDENMAVTFRGLEGHVMEQLKVYDVIFQFIQKSPDDIICKITMIWEKQNDDMPEPSNYMKFVKSLAADMDDHV 148          
The following BLAST results are available for this feature:
BLAST of CX078297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
ML329_ARATH4.144e-1128.00MLP-like protein 329 OS=Arabidopsis thaliana GN=ML... [more]
IPRT1_CATRO4.144e-1128.29Probable intracellular pathogenesis-related protei... [more]
ML328_ARATH9.231e-1126.67MLP-like protein 328 OS=Arabidopsis thaliana GN=ML... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8C03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8C03-F6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078297 ID=CX078297; Name=CX078297; organism=Citrus sinensis; type=EST; length=639bp
GCGGAAGGTAATGACTCCACATTATTAATAATATTGTTATTTTAAAAGTC
CAACAACACAAGCACAAGATTAATACATGATATATATGCAACGTAAGTGG
GTGCTTACGCAGCTTTTGCTCCTAATTAATTGGCCTTGAGAATATAGTCA
TCCACTTCCTGAAAGTTCTTGAGTGCAAAGTCCTTGATGACGCTTGGATC
GGGAACATCATCGCTTGCCTTTTCAAACTCACAAGCCCACTTCACCAAGC
TCCCTTCCCCCTTCGGATTAACACTCACGATGCCTTTGAAAGCCTTGTAG
TACTTCAACAGGTCCCCATCAATTACCTTGTAAGTAACCACCTTGTTTGC
TTCATCTACATTCTCGATCTTCTCTGTCGATACCTTCACAATTGGAGAAC
CATCAGCATAAGTGATGAGACGCACAGAGCCAGGGGCCTTGCCGTCGCCC
TCCAGCACTTGGATGCTCTTGTAATCGTGAGAGAATGCCTTGGGAAACAG
AGTGGTGGAGTCCCTAATGCTTCCCCAGAATTTGTCAGCTGATGACTTCA
CCTCAAGCTCGACTTCAAGCTTCCCACCTGCAGAAGCCATTCTCGATTTG
TTGTGTTGAGATGGATGATCAGACTGATGTTATTAGCTT
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