CX078279

Overview
NameCX078279
Unique NameCX078279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI3_SCHPO (DNA ligase 3 OS=Schizosaccharomyces pombe GN=adl1 PE=2 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 7.153e-33
Identity = 78/247 (31.58%), Postives = 139/247 (56.28%), Query Frame = 1
Query:   85 VLELVKMSLSVTSRLMSAYMLLTFCIAMANRFFRNN*EFVES-------IFMIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRD-----ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSS--SLRSKVIPKPRPYYRFADT--ISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            +L+  K+S     ++  A + +  C+ + +  F +    ++        +F  H     + FQF ++L + +   IQ+F   A+   CEGL++K ++       +TYEP KR   W+K+K+DY +   +SLDLVPI A++G G++ G +   LLA Y+ +   ++++CK  +GFS+   +E +   SL S      +P Y F +T  ++P ++F P EVWE+K A +T SP ++AA+G++  D+G+S
Sbjct:  496 ILDFQKLSTRERKKVTVADITIDVCVFVFDIMFCDGKSCLQMPLIERRRMFFEHFNLIPNRFQFVSSLETNEEQSIQEFFSLAITNKCEGLMVKVLNGTNSKFPSTYEPDKRGEGWIKVKQDYDDEF-ESLDLVPIGAWYGNGRKAGWFSPILLAVYNPDTGAYEAVCKCMSGFSDQFYKELTQKYSLESGN-SSLKPIYNFCETGKVTPQIYFAPQEVWEIKGAQITSSPAYKAALGLIQDDRGLS 740          

HSP 2 Score: 72.0182 bits (175), Expect = 4.052e-12
Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 3
Query:   15 FVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCNNFNIN 275
            F+++ E+VA D+   +IL FQ LSTR RK V+++DI +DVC++ FDI++ +G+  LQ  L  RR   ++ F   P  F   ++   N
Sbjct:  480 FIIEGELVAIDKSNGQILDFQKLSTRERKKVTVADITIDVCVFVFDIMFCDGKSCLQMPLIERRRMFFEHFNLIPNRFQFVSSLETN 566          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_STAMF (DNA ligase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=lig PE=3 SV=2)

HSP 1 Score: 140.584 bits (353), Expect = 9.342e-33
Identity = 66/187 (35.29%), Postives = 113/187 (60.43%), Query Frame = 1
Query:  217 MIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            ++ + +  + FQ A  + + + DE++KF   A++   EG++IK + ++A Y+   R   W+K K+DY   + D++DLV I AF+GRG+R G YGA L+A Y+ + + F+S+CK+G+GF +  +++    L+  +I    P  R    + PDVW  P  V E+  A+LT+SP+H   + ++ P  GIS
Sbjct:  376 LVEIIEQTETFQIAEYIRTNNPDELEKFFLKAIEDGAEGVMIKALHKNAIYQAGTRGWLWIKYKRDYKSEMIDTVDLVVIGAFYGRGRRGGKYGALLMASYNPDKDVFESVCKVGSGFKDEDIDKLPEMLKPYIIEHKHP--RVVARMKPDVWVTPALVAEIIGAELTLSPLHTCCLDIIKPGVGIS 560          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METS5 (DNA ligase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=lig PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.312e-32
Identity = 56/172 (32.56%), Postives = 102/172 (59.30%), Query Frame = 1
Query:  235 SLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIG 750
            S D    A+ + +  +D+++++   A+    EG+++K++  D+ Y+   R   W+KLK+DY   + D++DLV + AF+G+GKR G + + L+A Y+   + F+++CK+ +GFS+  L+E    +    + + + + R    + PDVW  PT V EV  A++TISP+H    G
Sbjct:  379 SNDKVHIASHIIADRVDKLREYFYQAISEGAEGVMVKSIGPDSIYQAGSRGWLWIKLKRDYQSEMADTVDLVVVGAFYGKGKRGGKFSSLLMAAYNPEKDVFETVCKVASGFSDQELDEMQKKINE--LKREQKHPRVVSDMIPDVWVSPTLVAEVIGAEITISPLHTCCRG 548          

HSP 2 Score: 39.2762 bits (90), Expect = 1.312e-32
Identity = 24/69 (34.78%), Postives = 37/69 (53.62%), Query Frame = 3
Query:   12 SFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIK-VDVCIYAFDILYRNGQPLLQEQLRVRREHL 215
            +F+++ EIV  D E  ++ PFQ L  R RKN     IK   V ++ FD+++  G+    + L  RR  L
Sbjct:  305 NFIVEGEIVPVDPESGEMRPFQELMHRRRKNNIAEAIKEYPVNLFLFDLMFFEGEDYTTKPLPERRAKL 373          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_METAC (DNA ligase 1 OS=Methanosarcina acetivorans GN=lig1 PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.899e-32
Identity = 55/158 (34.81%), Postives = 95/158 (60.13%), Query Frame = 1
Query:  277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIG 750
            +++E++ F +  V+   EG++ K+M  ++ YE  KRS  WLK K++Y E + ++ DLV + +++G+GKR G +GA L A  +   ++F++  K+GTGF+EA  EE +S L +  + +          + PD++ EP  V EV  +++T SP H A  G
Sbjct:  385 NIEELEDFFNETVEKGLEGIVAKSMSSNSVYEAGKRSWLWLKWKQEYSEGMRETFDLVVVGSYYGKGKRKGSFGALLCAVLNEEEQQFETFTKVGTGFTEADAEEINSLLSAHTVSEAPKNVIIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGEG 542          

HSP 2 Score: 44.2838 bits (103), Expect = 2.899e-32
Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAY---DREKQKI---LPFQTLSTRARK-NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRR 206
            S  + VLD EIVAY   ++E  +I    PFQ L  R RK  V     K  V ++ FDILY NG+ LL++    RR
Sbjct:  288 SADTIVLDGEIVAYAELEKENTRIEEFYPFQNLMQRRRKYEVEKYREKCPVAVFFFDILYLNGESLLKKTYPERR 362          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_CENSY (DNA ligase OS=Cenarchaeum symbiosum GN=lig PE=3 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 3.550e-32
Identity = 72/167 (43.11%), Postives = 103/167 (61.68%), Query Frame = 1
Query:  277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            D   ++  L+ +++A CEGL++K  D  A Y    R   WLKLK++Y   +GDSLDLV I AF G+G+RTG YG  LLA YD + + F SICK+GTGF++  L++    L  +V  K  P  R    +  DVWF+P  V EV A+++T+SPVH+ A+  V    G++
Sbjct:  384 DESALEDSLENSINAGCEGLMLKLPD--APYRAGSRGGYWLKLKREYRNELGDSLDLVIIGAFFGKGRRTGRYGTLLLATYDDSRDTFPSICKVGTGFTDEDLDQLYQLLSPRVTLKRNP--RIDSGMEADVWFDPEVVMEVVASEITLSPVHKTALDSVRKGAGLA 546          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_METMA (DNA ligase 1 OS=Methanosarcina mazei GN=lig1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 2.398e-31
Identity = 53/157 (33.76%), Postives = 93/157 (59.24%), Query Frame = 1
Query:  280 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIG 750
            ++EI+ F +  ++   EG+++K+M  ++ YE  KRS  W K K++Y E + ++ DLV + +++GRG+R G +GA L A  +   + F+++ K+GTGF+EA  EE +  L   ++ +          + PD++ EP  V EV  +++T SP H A  G
Sbjct:  385 VEEIEDFFNETIEKGLEGIVVKSMSSNSYYEAGKRSWFWFKWKQEYSEGMRETFDLVVVGSYYGRGRRKGSFGALLCAVLNKEGQRFETLTKVGTGFTEADAEEINRLLSDHIVSEIPKGVSIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGEG 541          

HSP 2 Score: 43.8986 bits (102), Expect = 2.398e-31
Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = 3
Query:   18 VLDCEIVAY---DREKQKI---LPFQTLSTRARK-NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRR 206
            VLD EIVAY   +R   +I    PFQ L  R RK  +     K  V ++ FDILY NG+PLL+     RR
Sbjct:  292 VLDGEIVAYAELERNGNRIEEFYPFQNLMQRRRKYEIENYRKKCPVAVFFFDILYLNGEPLLKRPYPERR 361          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULSO (DNA ligase OS=Sulfolobus solfataricus GN=lig PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.649e-29
Identity = 60/182 (32.97%), Postives = 106/182 (58.24%), Query Frame = 1
Query:  232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            K  D+ + A  + + ++++++ F   A+    EG+++K + +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  +++TISP+H     VV+ D G+S
Sbjct:  377 KPNDYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDSFESVCKVASGFSDEQLDELQKKLME--IKRDVKHPRVNSKMEPDIWVEPVYVAEIIGSEITISPLHTCCQDVVEKDAGLS 556          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULSH (DNA ligase OS=Sulfolobus shibatae GN=lig PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.649e-29
Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1
Query:  232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            K  D+ + A  +   ++++++ F   A+    EG+++K + +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S
Sbjct:  377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWIEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIY (DNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=lig PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.649e-29
Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1
Query:  232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            K  D+ + A  +   ++++++ F   A+    EG+++K + +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S
Sbjct:  377 KPNDYVKIAHHIQVNNIEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIN (DNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=lig PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29
Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1
Query:  232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            K  D+ + A  +   ++++++ F   A+    EG+++K + +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S
Sbjct:  377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556          
The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
DNLI3_SCHPO7.153e-3331.58DNA ligase 3 OS=Schizosaccharomyces pombe GN=adl1 ... [more]
DNLI_STAMF9.342e-3335.29DNA ligase OS=Staphylothermus marinus (strain ATCC... [more]
DNLI_METS51.312e-3232.56DNA ligase OS=Metallosphaera sedula (strain ATCC 5... [more]
DNLI1_METAC2.899e-3234.81DNA ligase 1 OS=Methanosarcina acetivorans GN=lig1... [more]
DNLI_CENSY3.550e-3243.11DNA ligase OS=Cenarchaeum symbiosum GN=lig PE=3 SV... [more]
DNLI1_METMA2.398e-3133.76DNA ligase 1 OS=Methanosarcina mazei GN=lig1 PE=3 ... [more]
DNLI_SULSO1.649e-2932.97DNA ligase OS=Sulfolobus solfataricus GN=lig PE=1 ... [more]
DNLI_SULSH1.649e-2933.52DNA ligase OS=Sulfolobus shibatae GN=lig PE=3 SV=1[more]
DNLI_SULIY1.649e-2933.52DNA ligase OS=Sulfolobus islandicus (strain Y.G.57... [more]
DNLI_SULIN2.154e-2933.52DNA ligase OS=Sulfolobus islandicus (strain Y.N.15... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bp
CTTCTGTAAGATCATTTGTTCTGGACTGTGAAATTGTTGCTTACGATCGG
GAAAAACAGAAAATCTTGCCCTTCCAGACCCTTAGTACTCGAGCTCGTAA
AAATGTCTCTCTCAGTGACATCAAGGTTGATGTCTGCATATATGCTTTTG
ACATTTTGTATCGCAATGGCCAACCGCTTCTTCAGGAACAACTGAGAGTT
CGTAGAGAGCATCTTTATGATTCATTTGAGGAAGAGCCTGGATTTTTTTC
AGTTTGCAACAACTTTAACATCAATTGATCTTGATGAAATACAAAAGTTT
CTAGATGCTGCTGTTGATGCAAGTTGTGAGGGTCTAATTATCAAAACAAT
GGATCGAGATGCTACATATGAGCCTTCAAAGCGATCGCTTAACTGGCTAA
AATTAAAGAAAGATTACATTGAGAGTATTGGAGACTCGCTGGATTTAGTA
CCCATTGCTGCATTTCATGGCCGTGGGAAACGTACAGGTGTTTATGGTGC
CTTTCTGTTGGCATGTTATGACAGCAATAATGAAGAATTTCAAAGCATAT
GTAAAATAGGCACTGGATTTTCTGAAGCGATGCTTGAAGAACGTTCTTCC
AGTCTCCGTTCTAAAGTTATACCCAAACCAAGGCCGTACTACCGGTTTGC
TGATACTATCAGTCCAGATGTATGGTTCGAGCCAACAGAGGTTTGGGAGG
TGAAAGCTGCGGACTTGACTATTAGCCCTGTTCATCGTGCTGCCATTGGT
GTTGTGGATCCTGATAAGGGCATTTCT
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