CX078279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI3_SCHPO (DNA ligase 3 OS=Schizosaccharomyces pombe GN=adl1 PE=2 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 7.153e-33 Identity = 78/247 (31.58%), Postives = 139/247 (56.28%), Query Frame = 1 Query: 85 VLELVKMSLSVTSRLMSAYMLLTFCIAMANRFFRNN*EFVES-------IFMIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRD-----ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSS--SLRSKVIPKPRPYYRFADT--ISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 +L+ K+S ++ A + + C+ + + F + ++ +F H + FQF ++L + + IQ+F A+ CEGL++K ++ +TYEP KR W+K+K+DY + +SLDLVPI A++G G++ G + LLA Y+ + ++++CK +GFS+ +E + SL S +P Y F +T ++P ++F P EVWE+K A +T SP ++AA+G++ D+G+S Sbjct: 496 ILDFQKLSTRERKKVTVADITIDVCVFVFDIMFCDGKSCLQMPLIERRRMFFEHFNLIPNRFQFVSSLETNEEQSIQEFFSLAITNKCEGLMVKVLNGTNSKFPSTYEPDKRGEGWIKVKQDYDDEF-ESLDLVPIGAWYGNGRKAGWFSPILLAVYNPDTGAYEAVCKCMSGFSDQFYKELTQKYSLESGN-SSLKPIYNFCETGKVTPQIYFAPQEVWEIKGAQITSSPAYKAALGLIQDDRGLS 740 HSP 2 Score: 72.0182 bits (175), Expect = 4.052e-12 Identity = 34/87 (39.08%), Postives = 54/87 (62.07%), Query Frame = 3 Query: 15 FVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCNNFNIN 275 F+++ E+VA D+ +IL FQ LSTR RK V+++DI +DVC++ FDI++ +G+ LQ L RR ++ F P F ++ N Sbjct: 480 FIIEGELVAIDKSNGQILDFQKLSTRERKKVTVADITIDVCVFVFDIMFCDGKSCLQMPLIERRRMFFEHFNLIPNRFQFVSSLETN 566
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_STAMF (DNA ligase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=lig PE=3 SV=2) HSP 1 Score: 140.584 bits (353), Expect = 9.342e-33 Identity = 66/187 (35.29%), Postives = 113/187 (60.43%), Query Frame = 1 Query: 217 MIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 ++ + + + FQ A + + + DE++KF A++ EG++IK + ++A Y+ R W+K K+DY + D++DLV I AF+GRG+R G YGA L+A Y+ + + F+S+CK+G+GF + +++ L+ +I P R + PDVW P V E+ A+LT+SP+H + ++ P GIS Sbjct: 376 LVEIIEQTETFQIAEYIRTNNPDELEKFFLKAIEDGAEGVMIKALHKNAIYQAGTRGWLWIKYKRDYKSEMIDTVDLVVIGAFYGRGRRGGKYGALLMASYNPDKDVFESVCKVGSGFKDEDIDKLPEMLKPYIIEHKHP--RVVARMKPDVWVTPALVAEIIGAELTLSPLHTCCLDIIKPGVGIS 560
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METS5 (DNA ligase OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=lig PE=3 SV=1) HSP 1 Score: 122.094 bits (305), Expect = 1.312e-32 Identity = 56/172 (32.56%), Postives = 102/172 (59.30%), Query Frame = 1 Query: 235 SLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIG 750 S D A+ + + +D+++++ A+ EG+++K++ D+ Y+ R W+KLK+DY + D++DLV + AF+G+GKR G + + L+A Y+ + F+++CK+ +GFS+ L+E + + + + + R + PDVW PT V EV A++TISP+H G Sbjct: 379 SNDKVHIASHIIADRVDKLREYFYQAISEGAEGVMVKSIGPDSIYQAGSRGWLWIKLKRDYQSEMADTVDLVVVGAFYGKGKRGGKFSSLLMAAYNPEKDVFETVCKVASGFSDQELDEMQKKINE--LKREQKHPRVVSDMIPDVWVSPTLVAEVIGAEITISPLHTCCRG 548 HSP 2 Score: 39.2762 bits (90), Expect = 1.312e-32 Identity = 24/69 (34.78%), Postives = 37/69 (53.62%), Query Frame = 3 Query: 12 SFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIK-VDVCIYAFDILYRNGQPLLQEQLRVRREHL 215 +F+++ EIV D E ++ PFQ L R RKN IK V ++ FD+++ G+ + L RR L Sbjct: 305 NFIVEGEIVPVDPESGEMRPFQELMHRRRKNNIAEAIKEYPVNLFLFDLMFFEGEDYTTKPLPERRAKL 373
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_METAC (DNA ligase 1 OS=Methanosarcina acetivorans GN=lig1 PE=3 SV=1) HSP 1 Score: 115.931 bits (289), Expect = 2.899e-32 Identity = 55/158 (34.81%), Postives = 95/158 (60.13%), Query Frame = 1 Query: 277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIG 750 +++E++ F + V+ EG++ K+M ++ YE KRS WLK K++Y E + ++ DLV + +++G+GKR G +GA L A + ++F++ K+GTGF+EA EE +S L + + + + PD++ EP V EV +++T SP H A G Sbjct: 385 NIEELEDFFNETVEKGLEGIVAKSMSSNSVYEAGKRSWLWLKWKQEYSEGMRETFDLVVVGSYYGKGKRKGSFGALLCAVLNEEEQQFETFTKVGTGFTEADAEEINSLLSAHTVSEAPKNVIIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGEG 542 HSP 2 Score: 44.2838 bits (103), Expect = 2.899e-32 Identity = 32/75 (42.67%), Postives = 41/75 (54.67%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAY---DREKQKI---LPFQTLSTRARK-NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRR 206 S + VLD EIVAY ++E +I PFQ L R RK V K V ++ FDILY NG+ LL++ RR Sbjct: 288 SADTIVLDGEIVAYAELEKENTRIEEFYPFQNLMQRRRKYEVEKYREKCPVAVFFFDILYLNGESLLKKTYPERR 362
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_CENSY (DNA ligase OS=Cenarchaeum symbiosum GN=lig PE=3 SV=2) HSP 1 Score: 138.658 bits (348), Expect = 3.550e-32 Identity = 72/167 (43.11%), Postives = 103/167 (61.68%), Query Frame = 1 Query: 277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 D ++ L+ +++A CEGL++K D A Y R WLKLK++Y +GDSLDLV I AF G+G+RTG YG LLA YD + + F SICK+GTGF++ L++ L +V K P R + DVWF+P V EV A+++T+SPVH+ A+ V G++ Sbjct: 384 DESALEDSLENSINAGCEGLMLKLPD--APYRAGSRGGYWLKLKREYRNELGDSLDLVIIGAFFGKGRRTGRYGTLLLATYDDSRDTFPSICKVGTGFTDEDLDQLYQLLSPRVTLKRNP--RIDSGMEADVWFDPEVVMEVVASEITLSPVHKTALDSVRKGAGLA 546
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_METMA (DNA ligase 1 OS=Methanosarcina mazei GN=lig1 PE=3 SV=1) HSP 1 Score: 113.235 bits (282), Expect = 2.398e-31 Identity = 53/157 (33.76%), Postives = 93/157 (59.24%), Query Frame = 1 Query: 280 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIG 750 ++EI+ F + ++ EG+++K+M ++ YE KRS W K K++Y E + ++ DLV + +++GRG+R G +GA L A + + F+++ K+GTGF+EA EE + L ++ + + PD++ EP V EV +++T SP H A G Sbjct: 385 VEEIEDFFNETIEKGLEGIVVKSMSSNSYYEAGKRSWFWFKWKQEYSEGMRETFDLVVVGSYYGRGRRKGSFGALLCAVLNKEGQRFETLTKVGTGFTEADAEEINRLLSDHIVSEIPKGVSIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGEG 541 HSP 2 Score: 43.8986 bits (102), Expect = 2.398e-31 Identity = 31/70 (44.29%), Postives = 38/70 (54.29%), Query Frame = 3 Query: 18 VLDCEIVAY---DREKQKI---LPFQTLSTRARK-NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRR 206 VLD EIVAY +R +I PFQ L R RK + K V ++ FDILY NG+PLL+ RR Sbjct: 292 VLDGEIVAYAELERNGNRIEEFYPFQNLMQRRRKYEIENYRKKCPVAVFFFDILYLNGEPLLKRPYPERR 361
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULSO (DNA ligase OS=Sulfolobus solfataricus GN=lig PE=1 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.649e-29 Identity = 60/182 (32.97%), Postives = 106/182 (58.24%), Query Frame = 1 Query: 232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 K D+ + A + + ++++++ F A+ EG+++K + +DA Y+ R W+KLK+DY + D++DLV + F+G+GKR G + L+A Y+ + F+S+CK+ +GFS+ L+E L I + + R + PD+W EP V E+ +++TISP+H VV+ D G+S Sbjct: 377 KPNDYVKIAHHIQANNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDSFESVCKVASGFSDEQLDELQKKLME--IKRDVKHPRVNSKMEPDIWVEPVYVAEIIGSEITISPLHTCCQDVVEKDAGLS 556
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULSH (DNA ligase OS=Sulfolobus shibatae GN=lig PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.649e-29 Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1 Query: 232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 K D+ + A + ++++++ F A+ EG+++K + +DA Y+ R W+KLK+DY + D++DLV + F+G+GKR G + L+A Y+ + F+S+CK+ +GFS+ L+E L I + + R + PD+W EP V E+ A++TISP+H VV+ D G+S Sbjct: 377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWIEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIY (DNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=lig PE=3 SV=1) HSP 1 Score: 129.798 bits (325), Expect = 1.649e-29 Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1 Query: 232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 K D+ + A + ++++++ F A+ EG+++K + +DA Y+ R W+KLK+DY + D++DLV + F+G+GKR G + L+A Y+ + F+S+CK+ +GFS+ L+E L I + + R + PD+W EP V E+ A++TISP+H VV+ D G+S Sbjct: 377 KPNDYVKIAHHIQVNNIEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIN (DNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=lig PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29 Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1 Query: 232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 K D+ + A + ++++++ F A+ EG+++K + +DA Y+ R W+KLK+DY + D++DLV + F+G+GKR G + L+A Y+ + F+S+CK+ +GFS+ L+E L I + + R + PD+W EP V E+ A++TISP+H VV+ D G+S Sbjct: 377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556 The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bpback to top |