CX078279

Overview
NameCX078279
Unique NameCX078279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIM (DNA ligase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=lig PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29
Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1
Query:  232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            K  D+ + A  +   ++++++ F   A+    EG+++K + +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S
Sbjct:  377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIL (DNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=lig PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29
Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1
Query:  232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            K  D+ + A  +   ++++++ F   A+    EG+++K + +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S
Sbjct:  377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIK (DNA ligase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=lig PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29
Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1
Query:  232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            K  D+ + A  +   ++++++ F   A+    EG+++K + +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S
Sbjct:  377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIA (DNA ligase OS=Sulfolobus islandicus (strain M.16.27) GN=lig PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29
Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1
Query:  232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777
            K  D+ + A  +   ++++++ F   A+    EG+++K + +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S
Sbjct:  377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_METBF (DNA ligase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=lig1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.491e-27
Identity = 64/179 (35.75%), Postives = 104/179 (58.10%), Query Frame = 1
Query:  223 HLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVD 759
            H+++S +    A  + + +L+EI+ F + A++   EG+IIK+M R++ YE  KRS  WLK K++Y   + ++ DL  I  ++GRGKR G +GA L A  +   + F++  K+GTGF+EA  +E  S L   +I +          + PD++ EP+ V EV  +++T SP H A  G  D
Sbjct:  335 HVKES-EILHLARRIVTDNLEEIEDFFNEALEKRLEGIIIKSMGRNSAYEAGKRSWFWLKWKEEYASGMRETFDLAIIGKYYGRGKRKGSFGALLCAILNGEEQRFETFTKVGTGFTEADAKEIDSLLSEHIISEVPKNVLIKSRMLPDIFVEPSLVIEVLGSEITESPSHTAGQGEGD 512          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_DICTD (Probable DNA ligase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=lig PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.788e-24
Identity = 56/155 (36.13%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV-YGAFLLACYDSNNEEFQSICKIGTG-FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVH 735
            D  EIQ F +  +    EG++ K +D  A Y+   R+ NW+KLK+ Y   + D++D V +  F GRG R     GA L+  YD   + F+++ KIGTG   E  +  R      K+  KP         I PDVW EP  V  ++A ++T SPVH
Sbjct:  377 DPKEIQAFFEECITEGLEGIVAKRLD--APYQAGIRNFNWIKLKRSYQGHLADTVDCVILGYFKGRGHRAKFGIGALLVGVYDDERDLFKTVAKIGTGPTEEEWVRFREVLDEIKLESKPN---NVESLIEPDVWVEPKYVVVIQADEITRSPVH 526          

HSP 2 Score: 41.5874 bits (96), Expect = 1.788e-24
Identity = 26/87 (29.89%), Postives = 44/87 (50.57%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARK-NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCN 260
            S ++ +++ E ++Y+ E  +  PFQ    R RK N+S       + ++AFDILY NG+ +       RR+ L ++  E    F   N
Sbjct:  286 SDKNVIIEGEAISYNPETGEFYPFQVTVQRKRKYNISEMVELYPLQLFAFDILYLNGEDITSLPYIRRRQKLEEAISEGEKIFVTKN 372          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_DICT6 (Probable DNA ligase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=lig PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.028e-24
Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 1
Query:  277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV-YGAFLLACYDSNNEEFQSICKIGTG-FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVH 735
            D  EIQ F +  +    EG++ K +D  A Y+   R+ NW+KLK+ Y   + D++D V +  F GRG R     GA L+  YD   + F++I KIGTG   E  ++ R      KV  +P     F   I PDVW EP  V  V+A ++T SPVH
Sbjct:  377 DPKEIQSFFEECITEGLEGIVAKRLD--APYQAGMRNFNWIKLKRSYQGHLADTVDCVILGYFKGRGHRAKFGIGALLVGVYDDERDLFKTIAKIGTGPTEEEWVKFREILDEIKVEKRPNNVESF---IEPDVWVEPKYVVVVQADEITRSPVH 526          

HSP 2 Score: 37.3502 bits (85), Expect = 3.028e-24
Identity = 23/76 (30.26%), Postives = 39/76 (51.32%), Query Frame = 3
Query:    9 RSFVLDCEIVAYDREKQKILPFQTLSTRARK-NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEE 233
            R  +++ E ++Y+ E  +  PFQ    R RK N+S       + ++AFDILY +G+         RR+ L ++  E
Sbjct:  288 RDVIIEGEAISYNPETGEFYPFQVTVQRKRKYNISEMVELYPLQLFAFDILYLDGEDTTSLPYIRRRQKLEEALVE 363          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_FOWPV (DNA ligase OS=Fowlpox virus GN=LIG PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 6.675e-24
Identity = 51/165 (30.91%), Postives = 88/165 (53.33%), Query Frame = 1
Query:  283 DEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES--IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPR---------PYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAA 744
            +E+ K L   +  + EG ++K  D    YEP  R   WLK+KKDY++   + D  DLV + A++G+G ++G+  +FL+ CYD+ +E++ ++ K   G ++  L+E + +L   V+P  R             + D I  D+   P  VWE+  ++ T S  H A+
Sbjct:  368 EELSKLLHIVLSKNIEGFVLK--DAKGVYEPGMR--RWLKIKKDYLDGCVMADKADLVVLGAYYGKGNKSGILSSFLMGCYDTKSEKWCTVTKCSGGHTDLELQEINDNL--SVVPFDRNAIPDWLSINKIHYPDVIISDISLAP--VWEIIGSEFTRSSTHTAS 524          

HSP 2 Score: 43.5134 bits (101), Expect = 6.675e-24
Identity = 26/79 (32.91%), Postives = 39/79 (49.37%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP 239
            S ++ +LD EI+  D E  + LPF TL    +           VCI+ FD LY N   L+ + L  RR  ++ + +E P
Sbjct:  279 SAKNMILDGEIILIDTETNQPLPFGTLGINKKSMYH----NACVCIFIFDCLYFNDTVLIDKPLIERRNIIHANIKEIP 353          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI3_HUMAN (DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.119e-23
Identity = 56/188 (29.79%), Postives = 93/188 (49.47%), Query Frame = 1
Query:  217 MIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP-----------RPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRA 741
            M+ +   + F +      ++DL ++   +   +    EGL++K  D   TYEP KR  +WLK+KKDY+   ++ D+ DLV + AF+G+G + G+   FL+ CYD  ++++ ++ K   G  +A L    + L    I K            + YY   D I PD   +   VWE+  A+ + S  H A
Sbjct:  621 MVEIPNRIMFSEMKRVTKALDLADM---ITRVIQEGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYY--PDFIVPDP--KKAAVWEITGAEFSKSEAHTA 797          

HSP 2 Score: 47.3654 bits (111), Expect = 1.119e-23
Identity = 27/76 (35.53%), Postives = 40/76 (52.63%), Query Frame = 3
Query:   12 SFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP 239
            S +LD E++  D +  K LPF TL     K  +  D   +VC++ FD +Y N   L+   L  RR+ L+D+  E P
Sbjct:  554 SMILDSEVLLIDNKTGKPLPFGTLGVH--KKAAFQD--ANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIP 625          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI3_DICDI (DNA ligase 3 OS=Dictyostelium discoideum GN=lig3 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 5.785e-22
Identity = 52/191 (27.23%), Postives = 99/191 (51.83%), Query Frame = 1
Query:  196 EFVESIFMIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPR--PYY-----RFA-DTISPDVWFEPTEVWEVKAADLTISPVH 735
            E +E   M+ ++  ++F +      + +  ++   L+       EGL+IK  D  + YEP  R  +W+K+KKDYI  + DS DL+ +  ++G G   G+   FL+ CYD  N+ ++++ K   G  +   A L+ + +S  +K+  +    PY+     ++A D I  D+  +   ++E+++A+ T S  H
Sbjct:  389 EILEKNVMV-VKNRIEFSEVTIVNGASEKSKLTALLNRVFKEKLEGLVIK--DAMSEYEPGCR--HWIKIKKDYIHGMADSADLIAVGGYYGSGSMGGLVTVFLMVCYDKQNKIYKTVVKASGGLDDNMIAKLQPKVTSTMTKISKEVSKIPYWLDCPKQYAPDFIVKDI--KQAMIFEIESAEFTKSDHH 572          

HSP 2 Score: 47.7506 bits (112), Expect = 5.785e-22
Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 3
Query:    9 RSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215
            +  +LD EI+  D +  + LPF TLS  A K     D    VC++ FDILY NG+ L+   L+ RRE L
Sbjct:  327 QQMILDGEILLMDTKTSQPLPFGTLS--AHKKNGFKD--ATVCVFLFDILYLNGKSLIHLPLKERREIL 391          
The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
DNLI_SULIM2.154e-2933.52DNA ligase OS=Sulfolobus islandicus (strain M.14.2... [more]
DNLI_SULIL2.154e-2933.52DNA ligase OS=Sulfolobus islandicus (strain L.S.2.... [more]
DNLI_SULIK2.154e-2933.52DNA ligase OS=Sulfolobus islandicus (strain M.16.4... [more]
DNLI_SULIA2.154e-2933.52DNA ligase OS=Sulfolobus islandicus (strain M.16.2... [more]
DNLI1_METBF4.491e-2735.75DNA ligase 1 OS=Methanosarcina barkeri (strain Fus... [more]
DNLI_DICTD1.788e-2436.13Probable DNA ligase OS=Dictyoglomus turgidum (stra... [more]
DNLI_DICT63.028e-2438.06Probable DNA ligase OS=Dictyoglomus thermophilum (... [more]
DNLI_FOWPV6.675e-2430.91DNA ligase OS=Fowlpox virus GN=LIG PE=3 SV=2[more]
DNLI3_HUMAN1.119e-2329.79DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2[more]
DNLI3_DICDI5.785e-2227.23DNA ligase 3 OS=Dictyostelium discoideum GN=lig3 P... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bp
CTTCTGTAAGATCATTTGTTCTGGACTGTGAAATTGTTGCTTACGATCGG
GAAAAACAGAAAATCTTGCCCTTCCAGACCCTTAGTACTCGAGCTCGTAA
AAATGTCTCTCTCAGTGACATCAAGGTTGATGTCTGCATATATGCTTTTG
ACATTTTGTATCGCAATGGCCAACCGCTTCTTCAGGAACAACTGAGAGTT
CGTAGAGAGCATCTTTATGATTCATTTGAGGAAGAGCCTGGATTTTTTTC
AGTTTGCAACAACTTTAACATCAATTGATCTTGATGAAATACAAAAGTTT
CTAGATGCTGCTGTTGATGCAAGTTGTGAGGGTCTAATTATCAAAACAAT
GGATCGAGATGCTACATATGAGCCTTCAAAGCGATCGCTTAACTGGCTAA
AATTAAAGAAAGATTACATTGAGAGTATTGGAGACTCGCTGGATTTAGTA
CCCATTGCTGCATTTCATGGCCGTGGGAAACGTACAGGTGTTTATGGTGC
CTTTCTGTTGGCATGTTATGACAGCAATAATGAAGAATTTCAAAGCATAT
GTAAAATAGGCACTGGATTTTCTGAAGCGATGCTTGAAGAACGTTCTTCC
AGTCTCCGTTCTAAAGTTATACCCAAACCAAGGCCGTACTACCGGTTTGC
TGATACTATCAGTCCAGATGTATGGTTCGAGCCAACAGAGGTTTGGGAGG
TGAAAGCTGCGGACTTGACTATTAGCCCTGTTCATCGTGCTGCCATTGGT
GTTGTGGATCCTGATAAGGGCATTTCT
back to top