CX078279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIM (DNA ligase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=lig PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29 Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1 Query: 232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 K D+ + A + ++++++ F A+ EG+++K + +DA Y+ R W+KLK+DY + D++DLV + F+G+GKR G + L+A Y+ + F+S+CK+ +GFS+ L+E L I + + R + PD+W EP V E+ A++TISP+H VV+ D G+S Sbjct: 377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIL (DNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=lig PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29 Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1 Query: 232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 K D+ + A + ++++++ F A+ EG+++K + +DA Y+ R W+KLK+DY + D++DLV + F+G+GKR G + L+A Y+ + F+S+CK+ +GFS+ L+E L I + + R + PD+W EP V E+ A++TISP+H VV+ D G+S Sbjct: 377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIK (DNA ligase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=lig PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29 Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1 Query: 232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 K D+ + A + ++++++ F A+ EG+++K + +DA Y+ R W+KLK+DY + D++DLV + F+G+GKR G + L+A Y+ + F+S+CK+ +GFS+ L+E L I + + R + PD+W EP V E+ A++TISP+H VV+ D G+S Sbjct: 377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_SULIA (DNA ligase OS=Sulfolobus islandicus (strain M.16.27) GN=lig PE=3 SV=1) HSP 1 Score: 129.413 bits (324), Expect = 2.154e-29 Identity = 61/182 (33.52%), Postives = 105/182 (57.69%), Query Frame = 1 Query: 232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGIS 777 K D+ + A + ++++++ F A+ EG+++K + +DA Y+ R W+KLK+DY + D++DLV + F+G+GKR G + L+A Y+ + F+S+CK+ +GFS+ L+E L I + + R + PD+W EP V E+ A++TISP+H VV+ D G+S Sbjct: 377 KPNDYVKIAHHIQVNNVEDLKSFFYRAISEGGEGVMVKAIGKDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLS 556
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI1_METBF (DNA ligase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=lig1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.491e-27 Identity = 64/179 (35.75%), Postives = 104/179 (58.10%), Query Frame = 1 Query: 223 HLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVD 759 H+++S + A + + +L+EI+ F + A++ EG+IIK+M R++ YE KRS WLK K++Y + ++ DL I ++GRGKR G +GA L A + + F++ K+GTGF+EA +E S L +I + + PD++ EP+ V EV +++T SP H A G D Sbjct: 335 HVKES-EILHLARRIVTDNLEEIEDFFNEALEKRLEGIIIKSMGRNSAYEAGKRSWFWLKWKEEYASGMRETFDLAIIGKYYGRGKRKGSFGALLCAILNGEEQRFETFTKVGTGFTEADAKEIDSLLSEHIISEVPKNVLIKSRMLPDIFVEPSLVIEVLGSEITESPSHTAGQGEGD 512
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_DICTD (Probable DNA ligase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=lig PE=3 SV=1) HSP 1 Score: 92.4337 bits (228), Expect = 1.788e-24 Identity = 56/155 (36.13%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV-YGAFLLACYDSNNEEFQSICKIGTG-FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVH 735 D EIQ F + + EG++ K +D A Y+ R+ NW+KLK+ Y + D++D V + F GRG R GA L+ YD + F+++ KIGTG E + R K+ KP I PDVW EP V ++A ++T SPVH Sbjct: 377 DPKEIQAFFEECITEGLEGIVAKRLD--APYQAGIRNFNWIKLKRSYQGHLADTVDCVILGYFKGRGHRAKFGIGALLVGVYDDERDLFKTVAKIGTGPTEEEWVRFREVLDEIKLESKPN---NVESLIEPDVWVEPKYVVVIQADEITRSPVH 526 HSP 2 Score: 41.5874 bits (96), Expect = 1.788e-24 Identity = 26/87 (29.89%), Postives = 44/87 (50.57%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARK-NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPGFFSVCN 260 S ++ +++ E ++Y+ E + PFQ R RK N+S + ++AFDILY NG+ + RR+ L ++ E F N Sbjct: 286 SDKNVIIEGEAISYNPETGEFYPFQVTVQRKRKYNISEMVELYPLQLFAFDILYLNGEDITSLPYIRRRQKLEEAISEGEKIFVTKN 372
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_DICT6 (Probable DNA ligase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=lig PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 3.028e-24 Identity = 59/155 (38.06%), Postives = 82/155 (52.90%), Query Frame = 1 Query: 277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV-YGAFLLACYDSNNEEFQSICKIGTG-FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVH 735 D EIQ F + + EG++ K +D A Y+ R+ NW+KLK+ Y + D++D V + F GRG R GA L+ YD + F++I KIGTG E ++ R KV +P F I PDVW EP V V+A ++T SPVH Sbjct: 377 DPKEIQSFFEECITEGLEGIVAKRLD--APYQAGMRNFNWIKLKRSYQGHLADTVDCVILGYFKGRGHRAKFGIGALLVGVYDDERDLFKTIAKIGTGPTEEEWVKFREILDEIKVEKRPNNVESF---IEPDVWVEPKYVVVVQADEITRSPVH 526 HSP 2 Score: 37.3502 bits (85), Expect = 3.028e-24 Identity = 23/76 (30.26%), Postives = 39/76 (51.32%), Query Frame = 3 Query: 9 RSFVLDCEIVAYDREKQKILPFQTLSTRARK-NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEE 233 R +++ E ++Y+ E + PFQ R RK N+S + ++AFDILY +G+ RR+ L ++ E Sbjct: 288 RDVIIEGEAISYNPETGEFYPFQVTVQRKRKYNISEMVELYPLQLFAFDILYLDGEDTTSLPYIRRRQKLEEALVE 363
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_FOWPV (DNA ligase OS=Fowlpox virus GN=LIG PE=3 SV=2) HSP 1 Score: 88.5817 bits (218), Expect = 6.675e-24 Identity = 51/165 (30.91%), Postives = 88/165 (53.33%), Query Frame = 1 Query: 283 DEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIES--IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPR---------PYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAA 744 +E+ K L + + EG ++K D YEP R WLK+KKDY++ + D DLV + A++G+G ++G+ +FL+ CYD+ +E++ ++ K G ++ L+E + +L V+P R + D I D+ P VWE+ ++ T S H A+ Sbjct: 368 EELSKLLHIVLSKNIEGFVLK--DAKGVYEPGMR--RWLKIKKDYLDGCVMADKADLVVLGAYYGKGNKSGILSSFLMGCYDTKSEKWCTVTKCSGGHTDLELQEINDNL--SVVPFDRNAIPDWLSINKIHYPDVIISDISLAP--VWEIIGSEFTRSSTHTAS 524 HSP 2 Score: 43.5134 bits (101), Expect = 6.675e-24 Identity = 26/79 (32.91%), Postives = 39/79 (49.37%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP 239 S ++ +LD EI+ D E + LPF TL + VCI+ FD LY N L+ + L RR ++ + +E P Sbjct: 279 SAKNMILDGEIILIDTETNQPLPFGTLGINKKSMYH----NACVCIFIFDCLYFNDTVLIDKPLIERRNIIHANIKEIP 353
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI3_HUMAN (DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.119e-23 Identity = 56/188 (29.79%), Postives = 93/188 (49.47%), Query Frame = 1 Query: 217 MIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP-----------RPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRA 741 M+ + + F + ++DL ++ + + EGL++K D TYEP KR +WLK+KKDY+ ++ D+ DLV + AF+G+G + G+ FL+ CYD ++++ ++ K G +A L + L I K + YY D I PD + VWE+ A+ + S H A Sbjct: 621 MVEIPNRIMFSEMKRVTKALDLADM---ITRVIQEGLEGLVLK--DVKGTYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYY--PDFIVPDP--KKAAVWEITGAEFSKSEAHTA 797 HSP 2 Score: 47.3654 bits (111), Expect = 1.119e-23 Identity = 27/76 (35.53%), Postives = 40/76 (52.63%), Query Frame = 3 Query: 12 SFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEP 239 S +LD E++ D + K LPF TL K + D +VC++ FD +Y N L+ L RR+ L+D+ E P Sbjct: 554 SMILDSEVLLIDNKTGKPLPFGTLGVH--KKAAFQD--ANVCLFVFDCIYFNDVSLMDRPLCERRKFLHDNMVEIP 625
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI3_DICDI (DNA ligase 3 OS=Dictyostelium discoideum GN=lig3 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 5.785e-22 Identity = 52/191 (27.23%), Postives = 99/191 (51.83%), Query Frame = 1 Query: 196 EFVESIFMIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPR--PYY-----RFA-DTISPDVWFEPTEVWEVKAADLTISPVH 735 E +E M+ ++ ++F + + + ++ L+ EGL+IK D + YEP R +W+K+KKDYI + DS DL+ + ++G G G+ FL+ CYD N+ ++++ K G + A L+ + +S +K+ + PY+ ++A D I D+ + ++E+++A+ T S H Sbjct: 389 EILEKNVMV-VKNRIEFSEVTIVNGASEKSKLTALLNRVFKEKLEGLVIK--DAMSEYEPGCR--HWIKIKKDYIHGMADSADLIAVGGYYGSGSMGGLVTVFLMVCYDKQNKIYKTVVKASGGLDDNMIAKLQPKVTSTMTKISKEVSKIPYWLDCPKQYAPDFIVKDI--KQAMIFEIESAEFTKSDHH 572 HSP 2 Score: 47.7506 bits (112), Expect = 5.785e-22 Identity = 29/69 (42.03%), Postives = 39/69 (56.52%), Query Frame = 3 Query: 9 RSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215 + +LD EI+ D + + LPF TLS A K D VC++ FDILY NG+ L+ L+ RRE L Sbjct: 327 QQMILDGEILLMDTKTSQPLPFGTLS--AHKKNGFKD--ATVCVFLFDILYLNGKSLIHLPLKERREIL 391 The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bpback to top |