CX078279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI2_METMA (DNA ligase 2 OS=Methanosarcina mazei GN=lig2 PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.098e-15 Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 1 Query: 277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 606 DL+ ++K A+ A EG+++K + ++ Y P KR NWLK K + D+LDLV + A G G+R + G++ +ACYD + F + K+GTG ++ L+E + L Sbjct: 392 DLELVEKIYREALKAGHEGVMVK--NPNSVYSPGKRGKNWLKKKP-----LMDTLDLVIVGAEWGFGRRANLIGSYTVACYDPDTTRFLQVGKVGTGLTDDQLKELTEIL 494 HSP 2 Score: 31.187 bits (69), Expect = 1.098e-15 Identity = 24/75 (32.00%), Postives = 37/75 (49.33%), Query Frame = 3 Query: 12 SFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSD--IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFE 230 S +LD E VA D E FQ + R R+ + + + + + + FDI+Y NG+ L+ L RR+ L E Sbjct: 300 SAILDGEAVAVD-ENGVPRAFQEILKRFRRKYDVREKALGIPIQLNFFDIMYINGKTLIDLPLLERRKALESCVE 373
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_NEUCR (DNA ligase 4 OS=Neurospora crassa GN=lig-4 PE=3 SV=1) HSP 1 Score: 63.1586 bits (152), Expect = 3.087e-15 Identity = 54/190 (28.42%), Postives = 81/190 (42.63%), Query Frame = 1 Query: 220 IHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN---------EEFQSICKIGTGFSEAMLEERSSSLRSK-----VIPKPRPYYRFA-----DTISPDVWFEPTE--VWEVKAADLTIS 726 +H R + F+ AT+ D I+ L V + EGL++K + + Y + R+ +W+K+K +Y+ G+SLD V + + G G+R G +FL S N E+ S K+G GF E K P Y PDVW P++ V VKAA +T S Sbjct: 463 VHRRLEILPFERATSP-----DAIEPLLRRVVAEASEGLVLK--NPRSRYSLNSRNNDWIKVKPEYMSDFGESLDCVVVGGYFGSGRRGGTLSSFLCGVRVSQNFIKSGNASAEKCLSFVKVGGGFKAEDYAEIRHHTEGKWQDWDPSSPPTEYIELGGGEKLQYEKPDVWIRPSDSVVISVKAASITQS 645 HSP 2 Score: 39.6614 bits (91), Expect = 3.087e-15 Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 3 Query: 6 VRSFVLDCEIVAYDREKQKILPFQTLSTRA---RKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215 VR+ +LD E++ +D + K++PF TL T A +KN S + + FDIL N +PL + L RR L Sbjct: 386 VRNLILDGEMITWDIDIDKMVPFGTLKTAALEQQKNPSKAGPR--PLYRVFDILLLNDKPLTEYTLNDRRRAL 456
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_NANEQ (DNA ligase OS=Nanoarchaeum equitans GN=lig PE=3 SV=1) HSP 1 Score: 52.7582 bits (125), Expect = 5.286e-15 Identity = 42/171 (24.56%), Postives = 81/171 (47.37%), Query Frame = 1 Query: 250 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 Q + + D + +F ++ EG++ K ++ A Y+P +R +KLK ++LDLV +AA G GKR+G +F +A D + + + ++GTG E +ER+ + + + + Y + V+ +P V EV ++ SP +++ + P Sbjct: 373 QLSIGIIEKDDKKAYQFYQDCLNKGLEGVMFKNLN--APYQPGRRVGYMVKLKPTL-----ETLDLVIVAAEWGEGKRSGWLTSFTVAALDKDTGNYLEVGEVGTGIKEK--KERAEDITFEELTELLKPYIYKQE-GKKVYVKPKIVVEVAYEEIQESPRYKSGFALRFP 533 HSP 2 Score: 49.2914 bits (116), Expect = 5.286e-15 Identity = 23/75 (30.67%), Postives = 44/75 (58.67%), Query Frame = 3 Query: 18 VLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDI--KVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEE 236 + + E V YD++ K LPFQ +S R ++ + + ++ V ++AFDI+Y G+ L+++ + RR L +E+ Sbjct: 294 IFEAEAVGYDKKTNKFLPFQKISQRVKRKYDIEKMAKEIPVELHAFDIVYLEGEQLMKKPFKERRALLEKVIDEK 368
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_YEAST (DNA ligase 4 OS=Saccharomyces cerevisiae GN=DNL4 PE=1 SV=1) HSP 1 Score: 58.151 bits (139), Expect = 1.146e-14 Identity = 45/183 (24.59%), Postives = 80/183 (43.72%), Query Frame = 1 Query: 280 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQ------------------------------SICKIGTGFSEAMLEE-----RSSSLRSKVIPKPRPYYRFADTISPDVWFEPTE--VWEVKAADL 717 ++ I+K L+ A+ EG+++K + ++Y + R+ NW+K+K +Y+E G++LDL+ I G+ +G +F+L + EE++ S C I G S+ +E R R+ + P F I P W +P+E V E+K+ L Sbjct: 426 VESIKKSLEVAISLGSEGVVLKYYN--SSYNVASRNNNWIKVKPEYLEEFGENLDLIVI------GRDSGKKDSFMLGLLVLDEEEYKKHQGDSSEIVDHSSQEKHIQNSRRRVKKILSFCSIANGISQEEFKEIDRKTRGHWKRTSEVAPPASILEFGSKI-PAEWIDPSESIVLEIKSRSL 599 HSP 2 Score: 42.743 bits (99), Expect = 1.146e-14 Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDI-KVDV--CIYAFDILYRNGQPLLQEQLRVRREHL 215 SV+ VLD E+V +D +++ ILPF + A++ +S + I VD FD+LY NG L L R+++L Sbjct: 331 SVKECVLDGEMVTFDAKRRVILPFGLVKGSAKEALSFNSINNVDFHPLYMVFDLLYLNGTSLTPLPLHQRKQYL 404
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_SCHPO (DNA ligase 4 OS=Schizosaccharomyces pombe GN=lig4 PE=2 SV=2) HSP 1 Score: 66.6254 bits (161), Expect = 1.146e-14 Identity = 44/163 (26.99%), Postives = 79/163 (48.47%), Query Frame = 1 Query: 280 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACY-----DSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFA----DTISPDVWFEPTE--VWEVKAADLTIS 726 +++I+ L + EGL+IK +Y +R +W+K+K Y++ G+ LD + + + GRGK++G +FL ++E+FQS ++G GF+ + K +P Y A D PD+W P + V ++KAA++ +S Sbjct: 436 IEDIEAELRNVIQEGSEGLVIKKPS--GSYHLGERMDDWIKVKPYYLQGFGEDLDCLILGGYFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTYFDRDIIRKETEGKWLPWSSDALEYMELAGTKQDFEKPDMWIHPKDSLVLQIKAAEVVVS 596 HSP 2 Score: 34.2686 bits (77), Expect = 1.146e-14 Identity = 21/70 (30.00%), Postives = 36/70 (51.43%), Query Frame = 3 Query: 6 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215 + +LD E+V +D + ++P+ +L + + S S + FDILY NG+ L++ L RR L Sbjct: 347 ISQIILDGEMVTWDPVLETVIPYGSLRSIFEDSSSHSSYSPYYVV--FDILYLNGKSLVKYSLESRRRIL 414
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_PYRHO (Probable thermostable DNA ligase OS=Pyrococcus horikoshii GN=lig PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.498e-14 Identity = 59/195 (30.26%), Postives = 95/195 (48.72%), Query Frame = 1 Query: 199 FVESIFMIHLRKSLDFF-------QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 FV++ F I RK L+ + A L + + +E +KF A++ EGL+ K +D A YEP R WLK+K ++LDLV I A G G+R ++G+F+L YD EF + K+G+GF++ L E + L+ ++ + V +P V EV ++ SP +R+ + P Sbjct: 349 FVDTKF-IERRKKLEEIVKPNGKIKVAENLITKNAEEAEKFYKRALEMGHEGLMAKRLD--AVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLFGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIVKEE----------GKRVVIQPKIVIEVTYQEIQKSPKYRSGFALRFP 525
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI2_HALWD (DNA ligase 2 OS=Haloquadratum walsbyi (strain DSM 16790) GN=lig2 PE=3 SV=1) HSP 1 Score: 64.6994 bits (156), Expect = 1.503e-14 Identity = 57/189 (30.16%), Postives = 87/189 (46.03%), Query Frame = 1 Query: 235 SLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNE-EFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP-------DKGIS 777 +L FQ T D + I + A+ EG+++K D D+TY P R +WLK K D ++LDLV A G G+R V+G F+++ + +E +F S+ K+ TG ++ L + L RP+ R D V EP V EV ++ SP + + + P DK IS Sbjct: 434 ALSPFQLTT-----DPNVIAQARSKALSNGHEGVMLK--DPDSTYNPGSRGQHWLKHKPDV-----ETLDLVVTGAEWGEGRRANVFGTFVVSARTTADEQQFNSLGKVATGLTDDQLTTLTEQL--------RPHVRSED--GQTVMIEPAIVVEVGYEEIQRSPTYDSGFALRFPRVVGIRHDKAIS 600 HSP 2 Score: 35.8094 bits (81), Expect = 1.503e-14 Identity = 24/72 (33.33%), Postives = 38/72 (52.78%), Query Frame = 3 Query: 18 VLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIK--VDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSF 227 +LD E+VA + L FQ + R R+ + ++ V++ +Y FD L+ + LL LR RRE L + F Sbjct: 359 ILDAEVVAVSDDGDP-LAFQEVLRRFRRKYDIDAMRESVNLNVYVFDCLHIDDADLLDIPLRERREKLRELF 429
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METLZ (DNA ligase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=lig PE=3 SV=1) HSP 1 Score: 79.7221 bits (195), Expect = 1.957e-14 Identity = 57/194 (29.38%), Postives = 94/194 (48.45%), Query Frame = 1 Query: 181 FRNN*EFVESIFMIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 FR + +ES+ ++ A L S +EI+ + +++D EG+++K +D + Y P R W+K+K + D++DLV AA G GKR ++G+FLLAC D N + + I ++ TG ++ML + K+I + V FEP V+EV A+L S + A + P Sbjct: 349 FRERRKILESVMNAYV---------APQLVSDSAEEIEAYYHSSLDNGNEGIMLKVLD--SPYLPGNRGKLWIKIKPEV-----DTIDLVVTAAEWGEGKRAKMFGSFLLACQDENGDLLE-ISRVATGIDDSMLSTLYDLFKDKIIAEK----------GKTVTFEPDVVFEVGYAELQKSTNYEAGYALRFP 515
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_CHICK (DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2) HSP 1 Score: 79.7221 bits (195), Expect = 1.957e-14 Identity = 50/161 (31.06%), Postives = 88/161 (54.66%), Query Frame = 1 Query: 286 EIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYD--SNNEE---FQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHR 738 E+ L+ A+D EG+++K D +TY+P KR WLK+K +Y+ + D LDL+ + + G+G R G+ FL A + + NE+ F SIC++G+G++ L + L P K P T P+++ EP + + ++KAA++ S +++ Sbjct: 418 EVIDALNEAIDNREEGIMVK--DPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSRGGMMSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPPCNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYK 576
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_NPVLD (DNA ligase OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=LIG PE=1 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.959e-14 Identity = 41/155 (26.45%), Postives = 85/155 (54.84%), Query Frame = 1 Query: 280 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYI--ESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPR----PYYRFADTISPDVWF---EPTEVWEVKAADL 717 L E+++F+ + EG+++K R ++Y P+KR +W K+KK+++ ++ D+LDLV + A++G G+ FL+ C D + + ++ K+ +G ++A L S LR ++ PR ++ +++ P + E VWE+ +++ Sbjct: 329 LSELRRFVHRTLATGAEGVVLK--GRLSSYAPNKR--DWFKMKKEHLCDGALVDTLDLVVLGAYYGTGRNCRKMSVFLMGCLDRESNVWTTVTKVHSGLADAALTALSKELR-PLMAAPRDDLPEWFDCNESMVPHLLAADPEKMPVWEIACSEM 478 HSP 2 Score: 33.113 bits (74), Expect = 1.959e-14 Identity = 27/72 (37.50%), Postives = 33/72 (45.83%), Query Frame = 3 Query: 9 RSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQ-EQLRVRREHLYD 221 R+F+LD EIV D + LPF TL + + VC+Y FD L NG L L RR L D Sbjct: 243 RNFILDAEIVMVDGSGEA-LPFGTLGRLKQ----MEHADGHVCMYIFDCLRYNGVSYLNATPLDFRRRVLQD 309 The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bpback to top |