CX078279

Overview
NameCX078279
Unique NameCX078279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI2_METMA (DNA ligase 2 OS=Methanosarcina mazei GN=lig2 PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.098e-15
Identity = 39/110 (35.45%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSL 606
            DL+ ++K    A+ A  EG+++K  + ++ Y P KR  NWLK K      + D+LDLV + A  G G+R  + G++ +ACYD +   F  + K+GTG ++  L+E +  L
Sbjct:  392 DLELVEKIYREALKAGHEGVMVK--NPNSVYSPGKRGKNWLKKKP-----LMDTLDLVIVGAEWGFGRRANLIGSYTVACYDPDTTRFLQVGKVGTGLTDDQLKELTEIL 494          

HSP 2 Score: 31.187 bits (69), Expect = 1.098e-15
Identity = 24/75 (32.00%), Postives = 37/75 (49.33%), Query Frame = 3
Query:   12 SFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSD--IKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFE 230
            S +LD E VA D E      FQ +  R R+   + +  + + + +  FDI+Y NG+ L+   L  RR+ L    E
Sbjct:  300 SAILDGEAVAVD-ENGVPRAFQEILKRFRRKYDVREKALGIPIQLNFFDIMYINGKTLIDLPLLERRKALESCVE 373          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_NEUCR (DNA ligase 4 OS=Neurospora crassa GN=lig-4 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 3.087e-15
Identity = 54/190 (28.42%), Postives = 81/190 (42.63%), Query Frame = 1
Query:  220 IHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN---------EEFQSICKIGTGFSEAMLEERSSSLRSK-----VIPKPRPYYRFA-----DTISPDVWFEPTE--VWEVKAADLTIS 726
            +H R  +  F+ AT+      D I+  L   V  + EGL++K  +  + Y  + R+ +W+K+K +Y+   G+SLD V +  + G G+R G   +FL     S N         E+  S  K+G GF      E       K         P  Y             PDVW  P++  V  VKAA +T S
Sbjct:  463 VHRRLEILPFERATSP-----DAIEPLLRRVVAEASEGLVLK--NPRSRYSLNSRNNDWIKVKPEYMSDFGESLDCVVVGGYFGSGRRGGTLSSFLCGVRVSQNFIKSGNASAEKCLSFVKVGGGFKAEDYAEIRHHTEGKWQDWDPSSPPTEYIELGGGEKLQYEKPDVWIRPSDSVVISVKAASITQS 645          

HSP 2 Score: 39.6614 bits (91), Expect = 3.087e-15
Identity = 27/73 (36.99%), Postives = 40/73 (54.79%), Query Frame = 3
Query:    6 VRSFVLDCEIVAYDREKQKILPFQTLSTRA---RKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215
            VR+ +LD E++ +D +  K++PF TL T A   +KN S +  +       FDIL  N +PL +  L  RR  L
Sbjct:  386 VRNLILDGEMITWDIDIDKMVPFGTLKTAALEQQKNPSKAGPR--PLYRVFDILLLNDKPLTEYTLNDRRRAL 456          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_NANEQ (DNA ligase OS=Nanoarchaeum equitans GN=lig PE=3 SV=1)

HSP 1 Score: 52.7582 bits (125), Expect = 5.286e-15
Identity = 42/171 (24.56%), Postives = 81/171 (47.37%), Query Frame = 1
Query:  250 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            Q +  +   D  +  +F    ++   EG++ K ++  A Y+P +R    +KLK        ++LDLV +AA  G GKR+G   +F +A  D +   +  + ++GTG  E   +ER+  +  + + +    Y +       V+ +P  V EV   ++  SP +++   +  P
Sbjct:  373 QLSIGIIEKDDKKAYQFYQDCLNKGLEGVMFKNLN--APYQPGRRVGYMVKLKPTL-----ETLDLVIVAAEWGEGKRSGWLTSFTVAALDKDTGNYLEVGEVGTGIKEK--KERAEDITFEELTELLKPYIYKQE-GKKVYVKPKIVVEVAYEEIQESPRYKSGFALRFP 533          

HSP 2 Score: 49.2914 bits (116), Expect = 5.286e-15
Identity = 23/75 (30.67%), Postives = 44/75 (58.67%), Query Frame = 3
Query:   18 VLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDI--KVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEE 236
            + + E V YD++  K LPFQ +S R ++   +  +  ++ V ++AFDI+Y  G+ L+++  + RR  L    +E+
Sbjct:  294 IFEAEAVGYDKKTNKFLPFQKISQRVKRKYDIEKMAKEIPVELHAFDIVYLEGEQLMKKPFKERRALLEKVIDEK 368          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_YEAST (DNA ligase 4 OS=Saccharomyces cerevisiae GN=DNL4 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 1.146e-14
Identity = 45/183 (24.59%), Postives = 80/183 (43.72%), Query Frame = 1
Query:  280 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQ------------------------------SICKIGTGFSEAMLEE-----RSSSLRSKVIPKPRPYYRFADTISPDVWFEPTE--VWEVKAADL 717
            ++ I+K L+ A+    EG+++K  +  ++Y  + R+ NW+K+K +Y+E  G++LDL+ I      G+ +G   +F+L     + EE++                              S C I  G S+   +E     R    R+  +  P     F   I P  W +P+E  V E+K+  L
Sbjct:  426 VESIKKSLEVAISLGSEGVVLKYYN--SSYNVASRNNNWIKVKPEYLEEFGENLDLIVI------GRDSGKKDSFMLGLLVLDEEEYKKHQGDSSEIVDHSSQEKHIQNSRRRVKKILSFCSIANGISQEEFKEIDRKTRGHWKRTSEVAPPASILEFGSKI-PAEWIDPSESIVLEIKSRSL 599          

HSP 2 Score: 42.743 bits (99), Expect = 1.146e-14
Identity = 27/74 (36.49%), Postives = 42/74 (56.76%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDI-KVDV--CIYAFDILYRNGQPLLQEQLRVRREHL 215
            SV+  VLD E+V +D +++ ILPF  +   A++ +S + I  VD       FD+LY NG  L    L  R+++L
Sbjct:  331 SVKECVLDGEMVTFDAKRRVILPFGLVKGSAKEALSFNSINNVDFHPLYMVFDLLYLNGTSLTPLPLHQRKQYL 404          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_SCHPO (DNA ligase 4 OS=Schizosaccharomyces pombe GN=lig4 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 1.146e-14
Identity = 44/163 (26.99%), Postives = 79/163 (48.47%), Query Frame = 1
Query:  280 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACY-----DSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFA----DTISPDVWFEPTE--VWEVKAADLTIS 726
            +++I+  L   +    EGL+IK      +Y   +R  +W+K+K  Y++  G+ LD + +  + GRGK++G   +FL           ++E+FQS  ++G GF+    +        K +P       Y   A    D   PD+W  P +  V ++KAA++ +S
Sbjct:  436 IEDIEAELRNVIQEGSEGLVIKKPS--GSYHLGERMDDWIKVKPYYLQGFGEDLDCLILGGYFGRGKQSGKINSFLCGLRMDYTPKDHSEKFQSFVRVGGGFTYFDRDIIRKETEGKWLPWSSDALEYMELAGTKQDFEKPDMWIHPKDSLVLQIKAAEVVVS 596          

HSP 2 Score: 34.2686 bits (77), Expect = 1.146e-14
Identity = 21/70 (30.00%), Postives = 36/70 (51.43%), Query Frame = 3
Query:    6 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215
            +   +LD E+V +D   + ++P+ +L +    + S S       +  FDILY NG+ L++  L  RR  L
Sbjct:  347 ISQIILDGEMVTWDPVLETVIPYGSLRSIFEDSSSHSSYSPYYVV--FDILYLNGKSLVKYSLESRRRIL 414          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_PYRHO (Probable thermostable DNA ligase OS=Pyrococcus horikoshii GN=lig PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.498e-14
Identity = 59/195 (30.26%), Postives = 95/195 (48.72%), Query Frame = 1
Query:  199 FVESIFMIHLRKSLDFF-------QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            FV++ F I  RK L+         + A  L + + +E +KF   A++   EGL+ K +D  A YEP  R   WLK+K        ++LDLV I A  G G+R  ++G+F+L  YD    EF  + K+G+GF++  L E +  L+  ++ +              V  +P  V EV   ++  SP +R+   +  P
Sbjct:  349 FVDTKF-IERRKKLEEIVKPNGKIKVAENLITKNAEEAEKFYKRALEMGHEGLMAKRLD--AVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLFGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIVKEE----------GKRVVIQPKIVIEVTYQEIQKSPKYRSGFALRFP 525          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI2_HALWD (DNA ligase 2 OS=Haloquadratum walsbyi (strain DSM 16790) GN=lig2 PE=3 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 1.503e-14
Identity = 57/189 (30.16%), Postives = 87/189 (46.03%), Query Frame = 1
Query:  235 SLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNE-EFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP-------DKGIS 777
            +L  FQ  T     D + I +    A+    EG+++K  D D+TY P  R  +WLK K D      ++LDLV   A  G G+R  V+G F+++   + +E +F S+ K+ TG ++  L   +  L        RP+ R  D     V  EP  V EV   ++  SP + +   +  P       DK IS
Sbjct:  434 ALSPFQLTT-----DPNVIAQARSKALSNGHEGVMLK--DPDSTYNPGSRGQHWLKHKPDV-----ETLDLVVTGAEWGEGRRANVFGTFVVSARTTADEQQFNSLGKVATGLTDDQLTTLTEQL--------RPHVRSED--GQTVMIEPAIVVEVGYEEIQRSPTYDSGFALRFPRVVGIRHDKAIS 600          

HSP 2 Score: 35.8094 bits (81), Expect = 1.503e-14
Identity = 24/72 (33.33%), Postives = 38/72 (52.78%), Query Frame = 3
Query:   18 VLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIK--VDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSF 227
            +LD E+VA   +    L FQ +  R R+   +  ++  V++ +Y FD L+ +   LL   LR RRE L + F
Sbjct:  359 ILDAEVVAVSDDGDP-LAFQEVLRRFRRKYDIDAMRESVNLNVYVFDCLHIDDADLLDIPLRERREKLRELF 429          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METLZ (DNA ligase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=lig PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.957e-14
Identity = 57/194 (29.38%), Postives = 94/194 (48.45%), Query Frame = 1
Query:  181 FRNN*EFVESIFMIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            FR   + +ES+   ++         A  L S   +EI+ +  +++D   EG+++K +D  + Y P  R   W+K+K +      D++DLV  AA  G GKR  ++G+FLLAC D N +  + I ++ TG  ++ML       + K+I +              V FEP  V+EV  A+L  S  + A   +  P
Sbjct:  349 FRERRKILESVMNAYV---------APQLVSDSAEEIEAYYHSSLDNGNEGIMLKVLD--SPYLPGNRGKLWIKIKPEV-----DTIDLVVTAAEWGEGKRAKMFGSFLLACQDENGDLLE-ISRVATGIDDSMLSTLYDLFKDKIIAEK----------GKTVTFEPDVVFEVGYAELQKSTNYEAGYALRFP 515          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_CHICK (DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 1.957e-14
Identity = 50/161 (31.06%), Postives = 88/161 (54.66%), Query Frame = 1
Query:  286 EIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYD--SNNEE---FQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHR 738
            E+   L+ A+D   EG+++K  D  +TY+P KR   WLK+K +Y+  + D LDL+ +  + G+G R G+   FL A  +  + NE+   F SIC++G+G++   L +    L     P   K  P      T  P+++ EP  + + ++KAA++  S +++
Sbjct:  418 EVIDALNEAIDNREEGIMVK--DPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSRGGMMSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPPCNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYK 576          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_NPVLD (DNA ligase OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=LIG PE=1 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.959e-14
Identity = 41/155 (26.45%), Postives = 85/155 (54.84%), Query Frame = 1
Query:  280 LDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYI--ESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPR----PYYRFADTISPDVWF---EPTEVWEVKAADL 717
            L E+++F+   +    EG+++K   R ++Y P+KR  +W K+KK+++   ++ D+LDLV + A++G G+       FL+ C D  +  + ++ K+ +G ++A L   S  LR  ++  PR     ++   +++ P +     E   VWE+  +++
Sbjct:  329 LSELRRFVHRTLATGAEGVVLK--GRLSSYAPNKR--DWFKMKKEHLCDGALVDTLDLVVLGAYYGTGRNCRKMSVFLMGCLDRESNVWTTVTKVHSGLADAALTALSKELR-PLMAAPRDDLPEWFDCNESMVPHLLAADPEKMPVWEIACSEM 478          

HSP 2 Score: 33.113 bits (74), Expect = 1.959e-14
Identity = 27/72 (37.50%), Postives = 33/72 (45.83%), Query Frame = 3
Query:    9 RSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIYAFDILYRNGQPLLQ-EQLRVRREHLYD 221
            R+F+LD EIV  D   +  LPF TL    +    +      VC+Y FD L  NG   L    L  RR  L D
Sbjct:  243 RNFILDAEIVMVDGSGEA-LPFGTLGRLKQ----MEHADGHVCMYIFDCLRYNGVSYLNATPLDFRRRVLQD 309          
The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
DNLI2_METMA1.098e-1535.45DNA ligase 2 OS=Methanosarcina mazei GN=lig2 PE=3 ... [more]
DNLI4_NEUCR3.087e-1528.42DNA ligase 4 OS=Neurospora crassa GN=lig-4 PE=3 SV... [more]
DNLI_NANEQ5.286e-1524.56DNA ligase OS=Nanoarchaeum equitans GN=lig PE=3 SV... [more]
DNLI4_YEAST1.146e-1424.59DNA ligase 4 OS=Saccharomyces cerevisiae GN=DNL4 P... [more]
DNLI4_SCHPO1.146e-1426.99DNA ligase 4 OS=Schizosaccharomyces pombe GN=lig4 ... [more]
DNLI_PYRHO1.498e-1430.26Probable thermostable DNA ligase OS=Pyrococcus hor... [more]
DNLI2_HALWD1.503e-1430.16DNA ligase 2 OS=Haloquadratum walsbyi (strain DSM ... [more]
DNLI_METLZ1.957e-1429.38DNA ligase OS=Methanocorpusculum labreanum (strain... [more]
DNLI4_CHICK1.957e-1431.06DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2[more]
DNLI_NPVLD1.959e-1426.45DNA ligase OS=Lymantria dispar multicapsid nuclear... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bp
CTTCTGTAAGATCATTTGTTCTGGACTGTGAAATTGTTGCTTACGATCGG
GAAAAACAGAAAATCTTGCCCTTCCAGACCCTTAGTACTCGAGCTCGTAA
AAATGTCTCTCTCAGTGACATCAAGGTTGATGTCTGCATATATGCTTTTG
ACATTTTGTATCGCAATGGCCAACCGCTTCTTCAGGAACAACTGAGAGTT
CGTAGAGAGCATCTTTATGATTCATTTGAGGAAGAGCCTGGATTTTTTTC
AGTTTGCAACAACTTTAACATCAATTGATCTTGATGAAATACAAAAGTTT
CTAGATGCTGCTGTTGATGCAAGTTGTGAGGGTCTAATTATCAAAACAAT
GGATCGAGATGCTACATATGAGCCTTCAAAGCGATCGCTTAACTGGCTAA
AATTAAAGAAAGATTACATTGAGAGTATTGGAGACTCGCTGGATTTAGTA
CCCATTGCTGCATTTCATGGCCGTGGGAAACGTACAGGTGTTTATGGTGC
CTTTCTGTTGGCATGTTATGACAGCAATAATGAAGAATTTCAAAGCATAT
GTAAAATAGGCACTGGATTTTCTGAAGCGATGCTTGAAGAACGTTCTTCC
AGTCTCCGTTCTAAAGTTATACCCAAACCAAGGCCGTACTACCGGTTTGC
TGATACTATCAGTCCAGATGTATGGTTCGAGCCAACAGAGGTTTGGGAGG
TGAAAGCTGCGGACTTGACTATTAGCCCTGTTCATCGTGCTGCCATTGGT
GTTGTGGATCCTGATAAGGGCATTTCT
back to top