CX078279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_UNCMA (DNA ligase OS=Uncultured methanogenic archaeon RC-I GN=lig PE=3 SV=1) HSP 1 Score: 56.9954 bits (136), Expect = 5.574e-14 Identity = 44/171 (25.73%), Postives = 82/171 (47.95%), Query Frame = 1 Query: 250 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 Q A L + ++ Q+ + +V + EGL+ K D +ATY P R +K+K S+ D+LDL ++A G G++ G +F +A D ++ + ++ +GFS+ L E + L+ + + + R D P + EVK ++ SP++ + + P Sbjct: 376 QPARALVTDQEEKAQELFEESVKSGNEGLMGK--DLNATYTPGVRGKKMVKIK-----SVLDTLDLAIVSAEWGHGRKAGWLTSFEVAALDEETGDYVILGRVASGFSDEQLIEMTEKLKPLITGE---HGRIVDV-------RPEIIVEVKFEEIQKSPIYSSGYALRFP 529 HSP 2 Score: 41.5874 bits (96), Expect = 5.574e-14 Identity = 22/68 (32.35%), Postives = 38/68 (55.88%), Query Frame = 3 Query: 18 VLDCEIVAYDREKQKILPFQTLSTRARK--NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215 +LD E +A D++ + +PFQ + TR R+ V + + + + FD+L+ GQ + LR RR+ L Sbjct: 297 ILDSECIAIDKDTGRPIPFQNILTRLRRIHKVEETQKQFPLILRPFDVLFNQGQSTIDLPLRERRKIL 364
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METMJ (DNA ligase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=lig PE=3 SV=1) HSP 1 Score: 63.929 bits (154), Expect = 7.248e-14 Identity = 49/181 (27.07%), Postives = 83/181 (45.86%), Query Frame = 1 Query: 229 RKSLDFF---QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 RK+LD A + D + A+D EG+++K +D + Y P R W+K+K ++LDLV + A G G+R G +G+FLLA D + K+ TG ++ +L E + + +VI + +V EP V+EV +++ SP + + + P Sbjct: 353 RKALDEVLGAHVAPQFPATDAAAAEAIYAEALDLGHEGVMVKVLD--SPYTPGVRGRLWVKVKPGV-----ETLDLVVVGAEWGEGRRAGTFGSFLLAVQDQG--RLLPVGKVATGITDEVLAELYALFKDRVIARS----------GKEVTLEPEVVFEVGYSEIQTSPNYESGYALRFP 514 HSP 2 Score: 34.2686 bits (77), Expect = 7.248e-14 Identity = 23/68 (33.82%), Postives = 36/68 (52.94%), Query Frame = 3 Query: 18 VLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDI--KVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215 +LD E VA K +PFQ + R R+ + + K+++ FDILY +G+ L+ L RR+ L Sbjct: 291 ILDGEAVAV--RDGKPMPFQYVIRRFRRKHEVDSMMEKIELVPMVFDILYLDGETLMDRPLAERRKAL 356
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_COCIM (DNA ligase 4 OS=Coccidioides immitis GN=LIG4 PE=3 SV=1) HSP 1 Score: 60.4622 bits (145), Expect = 9.281e-14 Identity = 57/205 (27.80%), Postives = 89/205 (43.41%), Query Frame = 1 Query: 208 SIFMIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQ--------SICKIGTGFSE---AMLEERSSSLRSKVIPKPRPYYRFADTIS-------PDVWFEPTE--VWEVKAADLTISPVHRAAIGVVDP 762 SI +H R + ++ + +I+ L V + EGL++K + ++ Y + R +W+K+K +Y+ G+SLD V I ++G GKR G +FL + Q S K+G GF+ A + + PK +P F + PDVW P E V VKAA +T S R + V P Sbjct: 445 SIKPVHRRLEVHTYEIGNSAA-----DIEPQLRKVVAEASEGLVLK--NPNSPYRLNDRHDDWMKVKPEYMTEFGESLDCVVIGGYYGSGKRGGGLASFLCGLRVDEAQVRQGASPMKCYSFLKVGGGFTAPDYANIRHHTDGKWKDWNPK-KPPTEFIELAGGDAQYERPDVWIRPDESVVLCVKAASVTPSDQFRLGLTVRFP 641 HSP 2 Score: 37.3502 bits (85), Expect = 9.281e-14 Identity = 27/77 (35.06%), Postives = 37/77 (48.05%), Query Frame = 3 Query: 6 VRSFVLDCEIVAYDREKQKILPFQTLSTRA--RKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFE 230 V + +LD E++ +D E+ LPF TL T A + S FDILY N + L + LR RR L S + Sbjct: 371 VDNIILDGEMITWDPEQDAPLPFGTLKTAALSEQRNPFSATGQRPLFRIFDILYLNDKALTRYTLRDRRRALEASIK 447
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_CANGA (DNA ligase 4 OS=Candida glabrata GN=LIG4 PE=3 SV=1) HSP 1 Score: 51.6026 bits (122), Expect = 9.290e-14 Identity = 47/175 (26.86%), Postives = 78/175 (44.57%), Query Frame = 1 Query: 277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYD--------------SNNEE-------FQSICKIGTGFSEAMLEERSSSLR-----SKVIPKPRPYYRFADTISPDVWFEPTE--VWEVKAADL 717 D I+K L+ A+ EG+I+K D + Y + RS +W+K+K +Y+E G+++DLV + G+ + +L D ++EE F S+C I G S +E + S+ IP P Y +F + P W +P + + E+KA L Sbjct: 440 DEQMIKKSLEKALSVGSEGIILKRYD--SRYVIASRSDDWIKIKPEYLEQFGENMDLVLM------GRDPSKKDSLMLGLLDYEEVIQDSPIMVNSQSSEENSQRFRGFVSLCIIANGISNEEYKEIDRKTKGLWNDSEKIP-PLEYMKFGSKV-PRQWIDPKKSLILEIKARSL 604 HSP 2 Score: 46.2098 bits (108), Expect = 9.290e-14 Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD---VCIYAFDILYRNGQPLLQEQLRVRREHL 215 +V+ VLDCE+V +D + +LPF + + A+ +S I + FD+LY NG L+ RRE+L Sbjct: 346 NVKDCVLDCEVVTFDSNNKIVLPFGMVKSSAKNMLSQDGIDTQGFHPLLMVFDVLYLNGATLVDLPYYKRREYL 419
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_THEFM (DNA ligase OS=Thermococcus fumicolans GN=lig PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14 Identity = 51/171 (29.82%), Postives = 84/171 (49.12%), Query Frame = 1 Query: 250 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 + A L + +E ++F A++ EGL+ K +D + YEP R WLK+K + LDLV I A G G+R + G+FL+A YD + EF + K+G+GF++ L E + L+ ++ + Y V EP V +V ++ SP + + + P Sbjct: 372 KLAQQLVTKKAEEAEEFYRRALELGHEGLMAKRLD--SVYEPGNRGKKWLKIKPTM-----EDLDLVIIGAEWGEGRRAHLLGSFLVAAYDQHRGEFVPVGKVGSGFTDEDLAEFTKMLKPLIVREEGKY----------VEIEPRVVIQVTYQEIQKSPKYESGFALRFP 525
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_PYRKO (DNA ligase OS=Pyrococcus kodakaraensis GN=lig PE=1 SV=2) HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14 Identity = 52/177 (29.38%), Postives = 89/177 (50.28%), Query Frame = 1 Query: 232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 K + + A L + ++E + F A++ EGL+ K +D + YEP R WLK+K ++LDLV I A G G+R + G+FL+A YD ++ EF + K+G+GF++ L E + L+ ++ + + V EP V EV ++ SP +++ + P Sbjct: 366 KESEKIKLAEQLITKKVEEAEAFYRRALELGHEGLMAKRLD--SIYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLLGSFLVAAYDPHSGEFLPVGKVGSGFTDEDLVEFTKMLKPYIVRQEGKF----------VEIEPKFVIEVTYQEIQKSPKYKSGFALRFP 525
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_ASHGO (DNA ligase 4 OS=Ashbya gossypii GN=LIG4 PE=3 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 1.566e-13 Identity = 48/176 (27.27%), Postives = 73/176 (41.48%), Query Frame = 1 Query: 277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN-----------------------EEFQSICKIGTGFSEAMLEERSSSLRSKVIP----KPRPYYRFADTISPDVWFEP--TEVWEVKAADL 717 D + I L AAV EG+++K + Y KR +W+K+K +Y+E+ G+++DLV I GR K + + + + NN E+F S C I G S +E R P KP + T +P W +P + V EVKA + Sbjct: 467 DAEAITAALGAAVAHGSEGIVLKKAR--SKYSVGKRDDSWIKIKPEYLENFGENMDLVVIGRDKGR-KDSFICALAVTDDSEKNNPSSYESGSDSDSDSEPIIVQPKIEKFISFCSIANGISNEEFKEIDRLTRGNWFPYDERKPPTDWVEFGTKTPREWIDPKNSVVLEVKARSI 639 HSP 2 Score: 43.8986 bits (102), Expect = 1.566e-13 Identity = 27/75 (36.00%), Postives = 39/75 (52.00%), Query Frame = 3 Query: 6 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIY-----AFDILYRNGQPLLQEQLRVRREHL 215 V+ +LD E+V+YD+E Q ILPF + A V+ Y FD+LY NGQ L + + R+E+L Sbjct: 372 VKECILDGEMVSYDKEMQCILPFGLTKSGASHQVNFETTGHTEPTYRPLYAVFDLLYLNGQLLTNQDVVKRKEYL 446
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_ARCFU (DNA ligase OS=Archaeoglobus fulgidus GN=lig PE=1 SV=2) HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13 Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 1 Query: 250 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 + A + + +DE++K D A+ A EG++IK + Y P KR NWLK+K +I ++LDLV + G GKR+ +F LAC D + + ++ TGF+E LEE + R ++ + V F P V+EV ++ SP + + + P Sbjct: 369 KLAKQIVTDSVDEVRKMYDEAISAGHEGVMIKLPS--SPYIPGKRGKNWLKVK-----AIMETLDLVVVGGEWGEGKRSHWLSSFELACLDPVTGKLLKVGRVATGFTEEDLEELTEMFRPLIVSQQ----------GKKVEFIPKYVFEVAYQEIQKSPKYESGYALRFP 522
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_HALSA (DNA ligase OS=Halobacterium salinarium GN=lig PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12 Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 1 Query: 265 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 L + D DEI F A++ EG+++K + A Y P R +WLK K D ++LDLV A G G+R V G FLL+ D+ + F++I K+ TG ++ L S L P+ R D + D+ EP V EV ++ SP + + + P Sbjct: 384 LVTDDADEIAAFEATALEGGHEGIMLK--NPAAPYTPGDRGKDWLKRKPDV-----ETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTDEELAALSDRL--------EPHVRSEDGQTVDI--EPAVVLEVGYEEIQASPTYSSGYALRFP 532
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_HALS3 (DNA ligase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=lig PE=3 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12 Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 1 Query: 265 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 L + D DEI F A++ EG+++K + A Y P R +WLK K D ++LDLV A G G+R V G FLL+ D+ + F++I K+ TG ++ L S L P+ R D + D+ EP V EV ++ SP + + + P Sbjct: 384 LVTDDADEIAAFEATALEGGHEGIMLK--NPAAPYTPGDRGKDWLKRKPDV-----ETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTDEELAALSDRL--------EPHVRSEDGQTVDI--EPAVVLEVGYEEIQASPTYSSGYALRFP 532 The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bpback to top |