CX078279

Overview
NameCX078279
Unique NameCX078279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_UNCMA (DNA ligase OS=Uncultured methanogenic archaeon RC-I GN=lig PE=3 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 5.574e-14
Identity = 44/171 (25.73%), Postives = 82/171 (47.95%), Query Frame = 1
Query:  250 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            Q A  L +   ++ Q+  + +V +  EGL+ K  D +ATY P  R    +K+K     S+ D+LDL  ++A  G G++ G   +F +A  D    ++  + ++ +GFS+  L E +  L+  +  +   + R  D         P  + EVK  ++  SP++ +   +  P
Sbjct:  376 QPARALVTDQEEKAQELFEESVKSGNEGLMGK--DLNATYTPGVRGKKMVKIK-----SVLDTLDLAIVSAEWGHGRKAGWLTSFEVAALDEETGDYVILGRVASGFSDEQLIEMTEKLKPLITGE---HGRIVDV-------RPEIIVEVKFEEIQKSPIYSSGYALRFP 529          

HSP 2 Score: 41.5874 bits (96), Expect = 5.574e-14
Identity = 22/68 (32.35%), Postives = 38/68 (55.88%), Query Frame = 3
Query:   18 VLDCEIVAYDREKQKILPFQTLSTRARK--NVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215
            +LD E +A D++  + +PFQ + TR R+   V  +  +  + +  FD+L+  GQ  +   LR RR+ L
Sbjct:  297 ILDSECIAIDKDTGRPIPFQNILTRLRRIHKVEETQKQFPLILRPFDVLFNQGQSTIDLPLRERRKIL 364          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METMJ (DNA ligase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=lig PE=3 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 7.248e-14
Identity = 49/181 (27.07%), Postives = 83/181 (45.86%), Query Frame = 1
Query:  229 RKSLDFF---QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            RK+LD       A    + D    +     A+D   EG+++K +D  + Y P  R   W+K+K        ++LDLV + A  G G+R G +G+FLLA  D        + K+ TG ++ +L E  +  + +VI +             +V  EP  V+EV  +++  SP + +   +  P
Sbjct:  353 RKALDEVLGAHVAPQFPATDAAAAEAIYAEALDLGHEGVMVKVLD--SPYTPGVRGRLWVKVKPGV-----ETLDLVVVGAEWGEGRRAGTFGSFLLAVQDQG--RLLPVGKVATGITDEVLAELYALFKDRVIARS----------GKEVTLEPEVVFEVGYSEIQTSPNYESGYALRFP 514          

HSP 2 Score: 34.2686 bits (77), Expect = 7.248e-14
Identity = 23/68 (33.82%), Postives = 36/68 (52.94%), Query Frame = 3
Query:   18 VLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDI--KVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215
            +LD E VA      K +PFQ +  R R+   +  +  K+++    FDILY +G+ L+   L  RR+ L
Sbjct:  291 ILDGEAVAV--RDGKPMPFQYVIRRFRRKHEVDSMMEKIELVPMVFDILYLDGETLMDRPLAERRKAL 356          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_COCIM (DNA ligase 4 OS=Coccidioides immitis GN=LIG4 PE=3 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 9.281e-14
Identity = 57/205 (27.80%), Postives = 89/205 (43.41%), Query Frame = 1
Query:  208 SIFMIHLRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQ--------SICKIGTGFSE---AMLEERSSSLRSKVIPKPRPYYRFADTIS-------PDVWFEPTE--VWEVKAADLTISPVHRAAIGVVDP 762
            SI  +H R  +  ++   +       +I+  L   V  + EGL++K  + ++ Y  + R  +W+K+K +Y+   G+SLD V I  ++G GKR G   +FL        +  Q        S  K+G GF+    A +   +        PK +P   F +          PDVW  P E  V  VKAA +T S   R  + V  P
Sbjct:  445 SIKPVHRRLEVHTYEIGNSAA-----DIEPQLRKVVAEASEGLVLK--NPNSPYRLNDRHDDWMKVKPEYMTEFGESLDCVVIGGYYGSGKRGGGLASFLCGLRVDEAQVRQGASPMKCYSFLKVGGGFTAPDYANIRHHTDGKWKDWNPK-KPPTEFIELAGGDAQYERPDVWIRPDESVVLCVKAASVTPSDQFRLGLTVRFP 641          

HSP 2 Score: 37.3502 bits (85), Expect = 9.281e-14
Identity = 27/77 (35.06%), Postives = 37/77 (48.05%), Query Frame = 3
Query:    6 VRSFVLDCEIVAYDREKQKILPFQTLSTRA--RKNVSLSDIKVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFE 230
            V + +LD E++ +D E+   LPF TL T A   +    S          FDILY N + L +  LR RR  L  S +
Sbjct:  371 VDNIILDGEMITWDPEQDAPLPFGTLKTAALSEQRNPFSATGQRPLFRIFDILYLNDKALTRYTLRDRRRALEASIK 447          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_CANGA (DNA ligase 4 OS=Candida glabrata GN=LIG4 PE=3 SV=1)

HSP 1 Score: 51.6026 bits (122), Expect = 9.290e-14
Identity = 47/175 (26.86%), Postives = 78/175 (44.57%), Query Frame = 1
Query:  277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYD--------------SNNEE-------FQSICKIGTGFSEAMLEERSSSLR-----SKVIPKPRPYYRFADTISPDVWFEPTE--VWEVKAADL 717
            D   I+K L+ A+    EG+I+K  D  + Y  + RS +W+K+K +Y+E  G+++DLV +      G+      + +L   D               ++EE       F S+C I  G S    +E     +     S+ IP P  Y +F   + P  W +P +  + E+KA  L
Sbjct:  440 DEQMIKKSLEKALSVGSEGIILKRYD--SRYVIASRSDDWIKIKPEYLEQFGENMDLVLM------GRDPSKKDSLMLGLLDYEEVIQDSPIMVNSQSSEENSQRFRGFVSLCIIANGISNEEYKEIDRKTKGLWNDSEKIP-PLEYMKFGSKV-PRQWIDPKKSLILEIKARSL 604          

HSP 2 Score: 46.2098 bits (108), Expect = 9.290e-14
Identity = 25/74 (33.78%), Postives = 39/74 (52.70%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVD---VCIYAFDILYRNGQPLLQEQLRVRREHL 215
            +V+  VLDCE+V +D   + +LPF  + + A+  +S   I        +  FD+LY NG  L+      RRE+L
Sbjct:  346 NVKDCVLDCEVVTFDSNNKIVLPFGMVKSSAKNMLSQDGIDTQGFHPLLMVFDVLYLNGATLVDLPYYKRREYL 419          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_THEFM (DNA ligase OS=Thermococcus fumicolans GN=lig PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 51/171 (29.82%), Postives = 84/171 (49.12%), Query Frame = 1
Query:  250 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            + A  L +   +E ++F   A++   EGL+ K +D  + YEP  R   WLK+K        + LDLV I A  G G+R  + G+FL+A YD +  EF  + K+G+GF++  L E +  L+  ++ +   Y          V  EP  V +V   ++  SP + +   +  P
Sbjct:  372 KLAQQLVTKKAEEAEEFYRRALELGHEGLMAKRLD--SVYEPGNRGKKWLKIKPTM-----EDLDLVIIGAEWGEGRRAHLLGSFLVAAYDQHRGEFVPVGKVGSGFTDEDLAEFTKMLKPLIVREEGKY----------VEIEPRVVIQVTYQEIQKSPKYESGFALRFP 525          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_PYRKO (DNA ligase OS=Pyrococcus kodakaraensis GN=lig PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 9.712e-14
Identity = 52/177 (29.38%), Postives = 89/177 (50.28%), Query Frame = 1
Query:  232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            K  +  + A  L +  ++E + F   A++   EGL+ K +D  + YEP  R   WLK+K        ++LDLV I A  G G+R  + G+FL+A YD ++ EF  + K+G+GF++  L E +  L+  ++ +   +          V  EP  V EV   ++  SP +++   +  P
Sbjct:  366 KESEKIKLAEQLITKKVEEAEAFYRRALELGHEGLMAKRLD--SIYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLLGSFLVAAYDPHSGEFLPVGKVGSGFTDEDLVEFTKMLKPYIVRQEGKF----------VEIEPKFVIEVTYQEIQKSPKYKSGFALRFP 525          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_ASHGO (DNA ligase 4 OS=Ashbya gossypii GN=LIG4 PE=3 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.566e-13
Identity = 48/176 (27.27%), Postives = 73/176 (41.48%), Query Frame = 1
Query:  277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN-----------------------EEFQSICKIGTGFSEAMLEERSSSLRSKVIP----KPRPYYRFADTISPDVWFEP--TEVWEVKAADL 717
            D + I   L AAV    EG+++K     + Y   KR  +W+K+K +Y+E+ G+++DLV I    GR K + +    +    + NN                       E+F S C I  G S    +E     R    P    KP   +    T +P  W +P  + V EVKA  +
Sbjct:  467 DAEAITAALGAAVAHGSEGIVLKKAR--SKYSVGKRDDSWIKIKPEYLENFGENMDLVVIGRDKGR-KDSFICALAVTDDSEKNNPSSYESGSDSDSDSEPIIVQPKIEKFISFCSIANGISNEEFKEIDRLTRGNWFPYDERKPPTDWVEFGTKTPREWIDPKNSVVLEVKARSI 639          

HSP 2 Score: 43.8986 bits (102), Expect = 1.566e-13
Identity = 27/75 (36.00%), Postives = 39/75 (52.00%), Query Frame = 3
Query:    6 VRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDIKVDVCIY-----AFDILYRNGQPLLQEQLRVRREHL 215
            V+  +LD E+V+YD+E Q ILPF    + A   V+          Y      FD+LY NGQ L  + +  R+E+L
Sbjct:  372 VKECILDGEMVSYDKEMQCILPFGLTKSGASHQVNFETTGHTEPTYRPLYAVFDLLYLNGQLLTNQDVVKRKEYL 446          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_ARCFU (DNA ligase OS=Archaeoglobus fulgidus GN=lig PE=1 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.820e-13
Identity = 51/171 (29.82%), Postives = 83/171 (48.54%), Query Frame = 1
Query:  250 QFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            + A  + +  +DE++K  D A+ A  EG++IK     + Y P KR  NWLK+K     +I ++LDLV +    G GKR+    +F LAC D    +   + ++ TGF+E  LEE +   R  ++ +              V F P  V+EV   ++  SP + +   +  P
Sbjct:  369 KLAKQIVTDSVDEVRKMYDEAISAGHEGVMIKLPS--SPYIPGKRGKNWLKVK-----AIMETLDLVVVGGEWGEGKRSHWLSSFELACLDPVTGKLLKVGRVATGFTEEDLEELTEMFRPLIVSQQ----------GKKVEFIPKYVFEVAYQEIQKSPKYESGYALRFP 522          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_HALSA (DNA ligase OS=Halobacterium salinarium GN=lig PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12
Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  265 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            L + D DEI  F   A++   EG+++K  +  A Y P  R  +WLK K D      ++LDLV   A  G G+R  V G FLL+  D+  + F++I K+ TG ++  L   S  L         P+ R  D  + D+  EP  V EV   ++  SP + +   +  P
Sbjct:  384 LVTDDADEIAAFEATALEGGHEGIMLK--NPAAPYTPGDRGKDWLKRKPDV-----ETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTDEELAALSDRL--------EPHVRSEDGQTVDI--EPAVVLEVGYEEIQASPTYSSGYALRFP 532          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_HALS3 (DNA ligase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=lig PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.832e-12
Identity = 53/166 (31.93%), Postives = 80/166 (48.19%), Query Frame = 1
Query:  265 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            L + D DEI  F   A++   EG+++K  +  A Y P  R  +WLK K D      ++LDLV   A  G G+R  V G FLL+  D+  + F++I K+ TG ++  L   S  L         P+ R  D  + D+  EP  V EV   ++  SP + +   +  P
Sbjct:  384 LVTDDADEIAAFEATALEGGHEGIMLK--NPAAPYTPGDRGKDWLKRKPDV-----ETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTDEELAALSDRL--------EPHVRSEDGQTVDI--EPAVVLEVGYEEIQASPTYSSGYALRFP 532          
The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
DNLI_UNCMA5.574e-1425.73DNA ligase OS=Uncultured methanogenic archaeon RC-... [more]
DNLI_METMJ7.248e-1427.07DNA ligase OS=Methanoculleus marisnigri (strain AT... [more]
DNLI4_COCIM9.281e-1427.80DNA ligase 4 OS=Coccidioides immitis GN=LIG4 PE=3 ... [more]
DNLI4_CANGA9.290e-1426.86DNA ligase 4 OS=Candida glabrata GN=LIG4 PE=3 SV=1[more]
DNLI_THEFM9.712e-1429.82DNA ligase OS=Thermococcus fumicolans GN=lig PE=3 ... [more]
DNLI_PYRKO9.712e-1429.38DNA ligase OS=Pyrococcus kodakaraensis GN=lig PE=1... [more]
DNLI4_ASHGO1.566e-1327.27DNA ligase 4 OS=Ashbya gossypii GN=LIG4 PE=3 SV=1[more]
DNLI_ARCFU4.820e-1329.82DNA ligase OS=Archaeoglobus fulgidus GN=lig PE=1 S... [more]
DNLI_HALSA1.832e-1231.93DNA ligase OS=Halobacterium salinarium GN=lig PE=3... [more]
DNLI_HALS31.832e-1231.93DNA ligase OS=Halobacterium salinarum (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bp
CTTCTGTAAGATCATTTGTTCTGGACTGTGAAATTGTTGCTTACGATCGG
GAAAAACAGAAAATCTTGCCCTTCCAGACCCTTAGTACTCGAGCTCGTAA
AAATGTCTCTCTCAGTGACATCAAGGTTGATGTCTGCATATATGCTTTTG
ACATTTTGTATCGCAATGGCCAACCGCTTCTTCAGGAACAACTGAGAGTT
CGTAGAGAGCATCTTTATGATTCATTTGAGGAAGAGCCTGGATTTTTTTC
AGTTTGCAACAACTTTAACATCAATTGATCTTGATGAAATACAAAAGTTT
CTAGATGCTGCTGTTGATGCAAGTTGTGAGGGTCTAATTATCAAAACAAT
GGATCGAGATGCTACATATGAGCCTTCAAAGCGATCGCTTAACTGGCTAA
AATTAAAGAAAGATTACATTGAGAGTATTGGAGACTCGCTGGATTTAGTA
CCCATTGCTGCATTTCATGGCCGTGGGAAACGTACAGGTGTTTATGGTGC
CTTTCTGTTGGCATGTTATGACAGCAATAATGAAGAATTTCAAAGCATAT
GTAAAATAGGCACTGGATTTTCTGAAGCGATGCTTGAAGAACGTTCTTCC
AGTCTCCGTTCTAAAGTTATACCCAAACCAAGGCCGTACTACCGGTTTGC
TGATACTATCAGTCCAGATGTATGGTTCGAGCCAACAGAGGTTTGGGAGG
TGAAAGCTGCGGACTTGACTATTAGCCCTGTTCATCGTGCTGCCATTGGT
GTTGTGGATCCTGATAAGGGCATTTCT
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