CX078279

Overview
NameCX078279
Unique NameCX078279
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length777
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METTP (DNA ligase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=lig PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12
Identity = 40/122 (32.79%), Postives = 68/122 (55.74%), Query Frame = 1
Query:  256 ATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVI 621
            A  + + D+  +++    A+ A  EG+++K  +  +TY P KR  NWLK+K      + +SLDLV I A  G GKR  + G++ LAC D++  E + +  + TG ++ ML E +   R  ++
Sbjct:  368 AEQVVTSDVHRVEEIYREALAAGHEGVMLK--NPSSTYTPGKRGKNWLKIKP-----LLESLDLVVIGARWGEGKRANLLGSYRLACIDTDTGELKDVGWVATGITDEMLAELTELFRELIV 482          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METHJ (DNA ligase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=lig PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 50/155 (32.26%), Postives = 80/155 (51.61%), Query Frame = 1
Query:  265 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISP 729
            L S D  EI+ +   A+DA  EG+++K   + + Y P  R  +W+K+K +      D+LDLV   A  G GKR  V+G+FLL+  D  ++    I ++ TGFS+  L     +L+  +I K              V+FEP  V+E+  +++  SP
Sbjct:  368 LVSDDETEIEAYYHTALDAGHEGVMLKL--QGSRYTPGVRGKDWVKIKPE-----ADTLDLVVTGAEWGEGKRAHVFGSFLLSVRD--DDRLVPISRVATGFSDEQLIWLFDTLQDDIIRKD----------GKMVYFEPRLVFEIGYSEIQKSP 503          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_ORYSJ (Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12
Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 1
Query:  328 EGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFL--LACYDSNN---EEFQSICKIGTGFS----EAMLEERSSSLRSKVIPKPRPYYRFADTIS-----PDVWFEPTEVWEVK 705
            EG+I+K  D ++ +EP  RS  WLKLK DYI + G  LD++ I  ++G G+R G    FL  LA    +N   + F S C++GTG S    +A++ +     R    PK  P  RF +  +     PDVW E  +   V+
Sbjct:  497 EGIILK--DLESKWEPGDRSGKWLKLKPDYIHA-GADLDVIIIGGYYGSGRRGGEVAQFLVGLAVPSDDNSYPKRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKKPP--RFYEVTNHSKERPDVWIESPDKQSVR 631          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METTF (DNA ligase OS=Methanobacterium thermoformicicum GN=lig PE=3 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 6.159e-12
Identity = 40/162 (24.69%), Postives = 77/162 (47.53%), Query Frame = 1
Query:  277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762
            +LD+       ++    EG++IK  D +A Y P  R    LK K +      ++LDL+ +   +GRGKR  + G++LLA  D  + E ++I  + TG  +  L++ S  + +  + +     R    + P++      + EV  +++  SP + +   +  P
Sbjct:  384 NLDDALWLFKESIREGHEGIMIK--DTEAPYIPGIRGKKMLKFKAE-----PETLDLIVVGGTYGRGKRAHLVGSYLLAVRDEKSGELKTIAHVATGLDDQTLQDLSERMENLKVERRGRKIR----VKPEI------ILEVAYSEIVRSPEYESGYSLRFP 528          

HSP 2 Score: 34.2686 bits (77), Expect = 6.159e-12
Identity = 21/59 (35.59%), Postives = 31/59 (52.54%), Query Frame = 3
Query:   72 FQTLSTRARKNVSLSDI--KVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG 242
            FQ +  R R+   +  +  +V + ++ FD+LY  G PL+ E L  RRE L     E PG
Sbjct:  313 FQYILQRVRRKYDVDRLTREVPLSLFLFDVLYHRG-PLIDEPLWHRREVLESILSEIPG 370          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_MOUSE (DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12
Identity = 44/161 (27.33%), Postives = 83/161 (51.55%), Query Frame = 1
Query:  286 EIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS-----NNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHR 738
            E+   L+ A+D   EG+++K     + Y+P KR   WLK+K +Y+  + D LD++ +  + G+G R G+   FL A  ++         F ++C++G+G++   L +    L     P   K  P      T  P+V+ EP  + + ++KAA++  S +++
Sbjct:  413 EVVDALNDAIDKREEGIMVK--HPLSIYKPDKRGEGWLKIKPEYVSGLMDELDVLIVGGYWGKGSRGGMMSHFLCAVAETPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFHKKSPPSSILCGTEKPEVYIEPQNSVIVQIKAAEIVPSDMYK 571          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_KLULA (DNA ligase 4 OS=Kluyveromyces lactis GN=LIG4 PE=3 SV=1)

HSP 1 Score: 51.2174 bits (121), Expect = 7.892e-12
Identity = 45/173 (26.01%), Postives = 81/173 (46.82%), Query Frame = 1
Query:  226 LRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFL--LACYDSN----NEEFQSICKIGTGFSEAMLE--ERSSSLRSKVIPK--PRPYYRFADTISPDVWFEPTE--VWEVKA 708
            + +S++  Q+   + +I+ + I+  L+ A+    EG+++K +   + Y    R+ +W+K+K +Y+E  G+++DL+ I      G+  G   +F   L+  D N       F S C I  G S    +  ER +  +  +  +  P P      T  P  W  P +  V EVKA
Sbjct:  407 VERSVEIIQY---MKAINAEAIKDSLEQAISMGSEGIVLKHLH--SKYFVGSRNTDWIKIKPEYLEQFGENMDLLII------GREQGKKDSFFCGLSISDPNEVAEKPRFISFCTIANGLSNEEFKDIERKTWGKWHIFSEDPPSPNLLGFGTKVPYEWIHPEDSVVLEVKA 568          

HSP 2 Score: 40.0466 bits (92), Expect = 7.892e-12
Identity = 24/77 (31.17%), Postives = 40/77 (51.95%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNV--SLSDI----KVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215
            +V+  +LD E++ YD EK  +LPF  + + A   +   L+ I           AFD++Y NG+ L    L  R+++L
Sbjct:  324 NVKDCILDGEMITYDTEKDIVLPFGLVKSSAMNQIQSELAGIAPTESYKPLFVAFDLVYLNGKSLTNLALERRKDYL 400          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METTH (DNA ligase OS=Methanobacterium thermoautotrophicum GN=lig PE=3 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 1.038e-11
Identity = 31/117 (26.50%), Postives = 60/117 (51.28%), Query Frame = 1
Query:  277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 627
            +L++     + ++    EG++IK  D +A Y P  R    LK K +      ++LDL+ +   +GRGKR  + G++LLA  D ++ +  ++  + TG  +  L++ S  +    I +
Sbjct:  384 NLNDALWLFEESIREGHEGIMIK--DTEAPYIPGIRGKKMLKFKAE-----PETLDLIVVGGTYGRGKRAHLVGSYLLAARDEDSGDLVTVAHVATGLDDETLQQLSERMEKLAIER 493          

HSP 2 Score: 35.8094 bits (81), Expect = 1.038e-11
Identity = 21/59 (35.59%), Postives = 32/59 (54.24%), Query Frame = 3
Query:   72 FQTLSTRARKNVSLSDI--KVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG 242
            FQ +  R R+   +  +  +V + ++ FD+LY   +PL+ E LR RRE L     E PG
Sbjct:  313 FQYILQRVRRKYDVERLTREVPLSLFLFDVLYHR-EPLIDEPLRHRREVLESILSEIPG 370          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_DICDI (DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11
Identity = 51/193 (26.42%), Postives = 95/193 (49.22%), Query Frame = 1
Query:  247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIG---DSLDLVPIAAFHGRG--KRTGVYGAFLLA---CYDSNNEE------------FQSICKIGTGFSEAMLEERSSSL----RSKVIPKPRPYYRFADTI--SPDVWFEP---TEVWEVKAADLTISPVHR 738
            F+ +   T   + +I   L++A+    EGL++K +   + Y P++R   W+K+K +YI+ +G   D LDLV I  ++G G  +R G    F+L      DS + +            F S CK+G+G+++  L+     L     +    KP    + A+     PDVW +P   ++V ++KA+ + ++  ++
Sbjct:  547 FEISEQTTVNSISQIISLLESAIINREEGLMLKNLH--SLYVPAERKDKWVKIKPEYIDGMGNGADDLDLVIIGGYYGSGLNRRGGTISHFMLGVPFIADSTDTDIDDESTFDKNVIFYSFCKVGSGYTDIQLKSLQKDLDPHWNNFSTSKPPSIIQLAEPFKEKPDVWIDPRVYSKVLQIKASQIVVTDKYK 737          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METJA (DNA ligase OS=Methanocaldococcus jannaschii GN=lig PE=3 SV=1)

HSP 1 Score: 46.595 bits (109), Expect = 1.347e-11
Identity = 37/119 (31.09%), Postives = 53/119 (44.54%), Query Frame = 1
Query:  232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLE 588
            KS      +  L + D  E ++F + ++    EG++IK +   A Y P  R     K K        +SLD+V   A  G GKR   YG+F + C          I  +GTG +EA LE
Sbjct:  384 KSDKIIDISYKLVTNDAKEAREFYNWSLSIGHEGVMIKNLK--APYTPGSRVRTMYKFKPTL-----ESLDVVITKAKRGMGKRKDWYGSFEI-CVRDEEGNLYPIGHVGTGLTEADLE 494          

HSP 2 Score: 43.8986 bits (102), Expect = 1.347e-11
Identity = 22/73 (30.14%), Postives = 42/73 (57.53%), Query Frame = 3
Query:    3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDI--KVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215
            +V   +++ E VA D++  K  PFQ +  R R+   +  +  ++++ +Y FDILY++G   + E+   RR+ L
Sbjct:  290 NVDKLIVEGECVAIDKQTGKPRPFQDILRRFRRKYDIGKMMKEINLRVYLFDILYKDGVSFIDEEFEKRRKVL 362          
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_NATPD (DNA ligase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=lig PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11
Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 1
Query:  277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVH 735
            D DE+      A+DA  EG+++K  + D+TY P  R  NWLK K D      ++LDLV   A  G G+R  + G F+++     ++ ++ + K+ TG ++  LE     L        +P+ R  D    DV  EP  V+EV   ++  SP +
Sbjct:  381 DADEVADIEADALDAGHEGIMLK--NPDSTYTPGSRGKNWLKRKPDV-----ETLDLVVTGAEWGEGRRANLLGTFVVSA--RADDGYEPVGKVATGITDEELERLHERL--------QPHVRTED--GTDVDIEPAVVFEVGYEEIQQSPTY 514          
The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
DNLI_METTP3.124e-1232.79DNA ligase OS=Methanosaeta thermophila (strain DSM... [more]
DNLI_METHJ5.329e-1232.26DNA ligase OS=Methanospirillum hungatei (strain JF... [more]
DNLI4_ORYSJ5.329e-1235.71Putative DNA ligase 4 OS=Oryza sativa subsp. japon... [more]
DNLI_METTF6.159e-1224.69DNA ligase OS=Methanobacterium thermoformicicum GN... [more]
DNLI4_MOUSE6.960e-1227.33DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=1[more]
DNLI4_KLULA7.892e-1226.01DNA ligase 4 OS=Kluyveromyces lactis GN=LIG4 PE=3 ... [more]
DNLI_METTH1.038e-1126.50DNA ligase OS=Methanobacterium thermoautotrophicum... [more]
DNLI4_DICDI1.187e-1126.42DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 P... [more]
DNLI_METJA1.347e-1131.09DNA ligase OS=Methanocaldococcus jannaschii GN=lig... [more]
DNLI_NATPD7.696e-1131.37DNA ligase OS=Natronomonas pharaonis (strain DSM 2... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bp
CTTCTGTAAGATCATTTGTTCTGGACTGTGAAATTGTTGCTTACGATCGG
GAAAAACAGAAAATCTTGCCCTTCCAGACCCTTAGTACTCGAGCTCGTAA
AAATGTCTCTCTCAGTGACATCAAGGTTGATGTCTGCATATATGCTTTTG
ACATTTTGTATCGCAATGGCCAACCGCTTCTTCAGGAACAACTGAGAGTT
CGTAGAGAGCATCTTTATGATTCATTTGAGGAAGAGCCTGGATTTTTTTC
AGTTTGCAACAACTTTAACATCAATTGATCTTGATGAAATACAAAAGTTT
CTAGATGCTGCTGTTGATGCAAGTTGTGAGGGTCTAATTATCAAAACAAT
GGATCGAGATGCTACATATGAGCCTTCAAAGCGATCGCTTAACTGGCTAA
AATTAAAGAAAGATTACATTGAGAGTATTGGAGACTCGCTGGATTTAGTA
CCCATTGCTGCATTTCATGGCCGTGGGAAACGTACAGGTGTTTATGGTGC
CTTTCTGTTGGCATGTTATGACAGCAATAATGAAGAATTTCAAAGCATAT
GTAAAATAGGCACTGGATTTTCTGAAGCGATGCTTGAAGAACGTTCTTCC
AGTCTCCGTTCTAAAGTTATACCCAAACCAAGGCCGTACTACCGGTTTGC
TGATACTATCAGTCCAGATGTATGGTTCGAGCCAACAGAGGTTTGGGAGG
TGAAAGCTGCGGACTTGACTATTAGCCCTGTTCATCGTGCTGCCATTGGT
GTTGTGGATCCTGATAAGGGCATTTCT
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