CX078279
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METTP (DNA ligase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=lig PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.124e-12 Identity = 40/122 (32.79%), Postives = 68/122 (55.74%), Query Frame = 1 Query: 256 ATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVI 621 A + + D+ +++ A+ A EG+++K + +TY P KR NWLK+K + +SLDLV I A G GKR + G++ LAC D++ E + + + TG ++ ML E + R ++ Sbjct: 368 AEQVVTSDVHRVEEIYREALAAGHEGVMLK--NPSSTYTPGKRGKNWLKIKP-----LLESLDLVVIGARWGEGKRANLLGSYRLACIDTDTGELKDVGWVATGITDEMLAELTELFRELIV 482
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METHJ (DNA ligase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=lig PE=3 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12 Identity = 50/155 (32.26%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 265 LTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISP 729 L S D EI+ + A+DA EG+++K + + Y P R +W+K+K + D+LDLV A G GKR V+G+FLL+ D ++ I ++ TGFS+ L +L+ +I K V+FEP V+E+ +++ SP Sbjct: 368 LVSDDETEIEAYYHTALDAGHEGVMLKL--QGSRYTPGVRGKDWVKIKPE-----ADTLDLVVTGAEWGEGKRAHVFGSFLLSVRD--DDRLVPISRVATGFSDEQLIWLFDTLQDDIIRKD----------GKMVYFEPRLVFEIGYSEIQKSP 503
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_ORYSJ (Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 5.329e-12 Identity = 50/140 (35.71%), Postives = 73/140 (52.14%), Query Frame = 1 Query: 328 EGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFL--LACYDSNN---EEFQSICKIGTGFS----EAMLEERSSSLRSKVIPKPRPYYRFADTIS-----PDVWFEPTEVWEVK 705 EG+I+K D ++ +EP RS WLKLK DYI + G LD++ I ++G G+R G FL LA +N + F S C++GTG S +A++ + R PK P RF + + PDVW E + V+ Sbjct: 497 EGIILK--DLESKWEPGDRSGKWLKLKPDYIHA-GADLDVIIIGGYYGSGRRGGEVAQFLVGLAVPSDDNSYPKRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKKPP--RFYEVTNHSKERPDVWIESPDKQSVR 631
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METTF (DNA ligase OS=Methanobacterium thermoformicicum GN=lig PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 6.159e-12 Identity = 40/162 (24.69%), Postives = 77/162 (47.53%), Query Frame = 1 Query: 277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDP 762 +LD+ ++ EG++IK D +A Y P R LK K + ++LDL+ + +GRGKR + G++LLA D + E ++I + TG + L++ S + + + + R + P++ + EV +++ SP + + + P Sbjct: 384 NLDDALWLFKESIREGHEGIMIK--DTEAPYIPGIRGKKMLKFKAE-----PETLDLIVVGGTYGRGKRAHLVGSYLLAVRDEKSGELKTIAHVATGLDDQTLQDLSERMENLKVERRGRKIR----VKPEI------ILEVAYSEIVRSPEYESGYSLRFP 528 HSP 2 Score: 34.2686 bits (77), Expect = 6.159e-12 Identity = 21/59 (35.59%), Postives = 31/59 (52.54%), Query Frame = 3 Query: 72 FQTLSTRARKNVSLSDI--KVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG 242 FQ + R R+ + + +V + ++ FD+LY G PL+ E L RRE L E PG Sbjct: 313 FQYILQRVRRKYDVDRLTREVPLSLFLFDVLYHRG-PLIDEPLWHRREVLESILSEIPG 370
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_MOUSE (DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.960e-12 Identity = 44/161 (27.33%), Postives = 83/161 (51.55%), Query Frame = 1 Query: 286 EIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS-----NNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHR 738 E+ L+ A+D EG+++K + Y+P KR WLK+K +Y+ + D LD++ + + G+G R G+ FL A ++ F ++C++G+G++ L + L P K P T P+V+ EP + + ++KAA++ S +++ Sbjct: 413 EVVDALNDAIDKREEGIMVK--HPLSIYKPDKRGEGWLKIKPEYVSGLMDELDVLIVGGYWGKGSRGGMMSHFLCAVAETPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFHKKSPPSSILCGTEKPEVYIEPQNSVIVQIKAAEIVPSDMYK 571
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_KLULA (DNA ligase 4 OS=Kluyveromyces lactis GN=LIG4 PE=3 SV=1) HSP 1 Score: 51.2174 bits (121), Expect = 7.892e-12 Identity = 45/173 (26.01%), Postives = 81/173 (46.82%), Query Frame = 1 Query: 226 LRKSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFL--LACYDSN----NEEFQSICKIGTGFSEAMLE--ERSSSLRSKVIPK--PRPYYRFADTISPDVWFEPTE--VWEVKA 708 + +S++ Q+ + +I+ + I+ L+ A+ EG+++K + + Y R+ +W+K+K +Y+E G+++DL+ I G+ G +F L+ D N F S C I G S + ER + + + + P P T P W P + V EVKA Sbjct: 407 VERSVEIIQY---MKAINAEAIKDSLEQAISMGSEGIVLKHLH--SKYFVGSRNTDWIKIKPEYLEQFGENMDLLII------GREQGKKDSFFCGLSISDPNEVAEKPRFISFCTIANGLSNEEFKDIERKTWGKWHIFSEDPPSPNLLGFGTKVPYEWIHPEDSVVLEVKA 568 HSP 2 Score: 40.0466 bits (92), Expect = 7.892e-12 Identity = 24/77 (31.17%), Postives = 40/77 (51.95%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNV--SLSDI----KVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215 +V+ +LD E++ YD EK +LPF + + A + L+ I AFD++Y NG+ L L R+++L Sbjct: 324 NVKDCILDGEMITYDTEKDIVLPFGLVKSSAMNQIQSELAGIAPTESYKPLFVAFDLVYLNGKSLTNLALERRKDYL 400
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METTH (DNA ligase OS=Methanobacterium thermoautotrophicum GN=lig PE=3 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 1.038e-11 Identity = 31/117 (26.50%), Postives = 60/117 (51.28%), Query Frame = 1 Query: 277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPK 627 +L++ + ++ EG++IK D +A Y P R LK K + ++LDL+ + +GRGKR + G++LLA D ++ + ++ + TG + L++ S + I + Sbjct: 384 NLNDALWLFEESIREGHEGIMIK--DTEAPYIPGIRGKKMLKFKAE-----PETLDLIVVGGTYGRGKRAHLVGSYLLAARDEDSGDLVTVAHVATGLDDETLQQLSERMEKLAIER 493 HSP 2 Score: 35.8094 bits (81), Expect = 1.038e-11 Identity = 21/59 (35.59%), Postives = 32/59 (54.24%), Query Frame = 3 Query: 72 FQTLSTRARKNVSLSDI--KVDVCIYAFDILYRNGQPLLQEQLRVRREHLYDSFEEEPG 242 FQ + R R+ + + +V + ++ FD+LY +PL+ E LR RRE L E PG Sbjct: 313 FQYILQRVRRKYDVERLTREVPLSLFLFDVLYHR-EPLIDEPLRHRREVLESILSEIPG 370
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI4_DICDI (DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.187e-11 Identity = 51/193 (26.42%), Postives = 95/193 (49.22%), Query Frame = 1 Query: 247 FQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIG---DSLDLVPIAAFHGRG--KRTGVYGAFLLA---CYDSNNEE------------FQSICKIGTGFSEAMLEERSSSL----RSKVIPKPRPYYRFADTI--SPDVWFEP---TEVWEVKAADLTISPVHR 738 F+ + T + +I L++A+ EGL++K + + Y P++R W+K+K +YI+ +G D LDLV I ++G G +R G F+L DS + + F S CK+G+G+++ L+ L + KP + A+ PDVW +P ++V ++KA+ + ++ ++ Sbjct: 547 FEISEQTTVNSISQIISLLESAIINREEGLMLKNLH--SLYVPAERKDKWVKIKPEYIDGMGNGADDLDLVIIGGYYGSGLNRRGGTISHFMLGVPFIADSTDTDIDDESTFDKNVIFYSFCKVGSGYTDIQLKSLQKDLDPHWNNFSTSKPPSIIQLAEPFKEKPDVWIDPRVYSKVLQIKASQIVVTDKYK 737
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_METJA (DNA ligase OS=Methanocaldococcus jannaschii GN=lig PE=3 SV=1) HSP 1 Score: 46.595 bits (109), Expect = 1.347e-11 Identity = 37/119 (31.09%), Postives = 53/119 (44.54%), Query Frame = 1 Query: 232 KSLDFFQFATTLTSIDLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLE 588 KS + L + D E ++F + ++ EG++IK + A Y P R K K +SLD+V A G GKR YG+F + C I +GTG +EA LE Sbjct: 384 KSDKIIDISYKLVTNDAKEAREFYNWSLSIGHEGVMIKNLK--APYTPGSRVRTMYKFKPTL-----ESLDVVITKAKRGMGKRKDWYGSFEI-CVRDEEGNLYPIGHVGTGLTEADLE 494 HSP 2 Score: 43.8986 bits (102), Expect = 1.347e-11 Identity = 22/73 (30.14%), Postives = 42/73 (57.53%), Query Frame = 3 Query: 3 SVRSFVLDCEIVAYDREKQKILPFQTLSTRARKNVSLSDI--KVDVCIYAFDILYRNGQPLLQEQLRVRREHL 215 +V +++ E VA D++ K PFQ + R R+ + + ++++ +Y FDILY++G + E+ RR+ L Sbjct: 290 NVDKLIVEGECVAIDKQTGKPRPFQDILRRFRRKYDIGKMMKEINLRVYLFDILYKDGVSFIDEEFEKRRKVL 362
BLAST of CX078279 vs. ExPASy Swiss-Prot
Match: DNLI_NATPD (DNA ligase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=lig PE=3 SV=1) HSP 1 Score: 67.781 bits (164), Expect = 7.696e-11 Identity = 48/153 (31.37%), Postives = 76/153 (49.67%), Query Frame = 1 Query: 277 DLDEIQKFLDAAVDASCEGLIIKTMDRDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVH 735 D DE+ A+DA EG+++K + D+TY P R NWLK K D ++LDLV A G G+R + G F+++ ++ ++ + K+ TG ++ LE L +P+ R D DV EP V+EV ++ SP + Sbjct: 381 DADEVADIEADALDAGHEGIMLK--NPDSTYTPGSRGKNWLKRKPDV-----ETLDLVVTGAEWGEGRRANLLGTFVVSA--RADDGYEPVGKVATGITDEELERLHERL--------QPHVRTED--GTDVDIEPAVVFEVGYEEIQQSPTY 514 The following BLAST results are available for this feature:
BLAST of CX078279 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 100
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078279 ID=CX078279; Name=CX078279; organism=Citrus sinensis; type=EST; length=777bpback to top |