CX078278

Overview
NameCX078278
Unique NameCX078278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PICTO (DNA ligase OS=Picrophilus torridus GN=lig PE=3 SV=2)

HSP 1 Score: 166.007 bits (419), Expect = 2.206e-40
Identity = 75/172 (43.60%), Postives = 116/172 (67.44%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            D+ Y    R   W+K K+DY   + DSLDLV + AF G G+R G +GA LLACY+S ++ F+++CK+G+GF++ ML E    L  K++ K +P  R   ++ PD W  P+ V E++ A++T+SPVH  A+ +++   G++LRFPRLI+ R+DK PE A+++ ++ EMY AQK
Sbjct:  410 DSIYRAGARGWLWIKFKRDYQSELSDSLDLVVVGAFDGHGRRKGTFGALLLACYNSKDDTFETVCKLGSGFTDEMLSEMPRLLGDKIVEK-KP-ARVNSSMEPDHWIYPSLVLEIRGAEITVSPVHTCAMNIIEKGSGLALRFPRLIKPRDDKKPEDATTTNEIIEMYKAQK 579          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRCJ (DNA ligase OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=lig PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.383e-40
Identity = 80/172 (46.51%), Postives = 111/172 (64.53%), Query Frame = -2
Query:  288 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLI-RVREDKTPEQASSSEQVAEMYTAQK 800
            +TYE   R  NW+K K+DY   + D++DLV + AFHGRGKR G+YGAFLLA YD + + F ++CK+G+GF++A L      L+   IP   P  R    + PDVWF P  V EV  A++T+SP+H   IG V P  G+++RFPR   R R DK PE A++++++ EMY  QK
Sbjct:  409 STYEMGARGWNWIKYKRDYRSEMIDTVDLVVVGAFHGRGKRAGLYGAFLLAAYDPSTDMFYTVCKVGSGFTDADLRRMYDMLQPLKIPHRHP--RVVSKMQPDVWFVPQVVIEVIGAEITLSPLHTCCIGAVKPGVGLAIRFPRFTGRYRTDKRPEDATTTKELVEMYQRQK 578          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_THENV (DNA ligase OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=lig PE=3 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.697e-38
Identity = 77/170 (45.29%), Postives = 111/170 (65.29%), Query Frame = -2
Query:  288 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLI-RVREDKTPEQASSSEQVAEMYTAQK 794
            YE   R  NW+K K+DY   + D++DLV + AF+GRGKR G+YGAFLLA YD   + F ++CK+G+GF++A L++    L+   IP   P  R    ++PDVWF P  V EV  A++T+SP+H   +G V P  G+++RFPR   R R DK+PEQA++  ++ E+Y  QK
Sbjct:  411 YEMGARGWNWIKYKRDYKSEMIDTVDLVVVGAFYGRGKRAGLYGAFLLAAYDPQTDMFYTVCKVGSGFTDADLKKMYEVLQPYKIPHRHP--RVVSKMTPDVWFTPQVVIEVIGAEITLSPLHTCCLGAVRPGVGLAIRFPRFTGRYRTDKSPEQATTPAEMVELYKRQK 578          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRIL (DNA ligase OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=lig PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 3.522e-38
Identity = 77/172 (44.77%), Postives = 111/172 (64.53%), Query Frame = -2
Query:  288 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLI-RVREDKTPEQASSSEQVAEMYTAQK 800
            + YE   R  NW+K K+DY   + D++DLV + AF+GRGKR G+YGAFLLA YD   + F ++CK+G+GF++A L++    L+   IP   P  R    + PDVWF P  V EV  A++T+SP+H   +G V P  G+++RFPR   R R DK+PEQA++  ++ E+Y  QK
Sbjct:  409 SVYEMGARGWNWIKYKRDYKSEMIDTVDLVVVGAFYGRGKRAGLYGAFLLAAYDPATDMFYTVCKVGSGFTDADLKKMYEMLQPYKIPHRHP--RVVSKMEPDVWFTPQVVIEVIGAEITLSPLHTCCLGAVKPGVGLAIRFPRFTGRYRTDKSPEQATTVSEMIELYKRQK 578          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_AERPE (DNA ligase OS=Aeropyrum pernix GN=lig PE=3 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 6.008e-38
Identity = 74/172 (43.02%), Postives = 109/172 (63.37%), Query Frame = -2
Query:  291 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 806
            RD+ Y    R   W+KLK+DY   + D++DLV + AF+GRGKR G   + L+A YD + + F ++CK+ TGF++  L+  +  L+  +IP+  P  R    I PDVW EP  V E+  A+LT+SP+H   +  V P  GIS+RFPR IR R+DK+PE A+++ ++ EMY  Q
Sbjct:  422 RDSVYTAGVRGWLWVKLKRDYKSEMMDTVDLVVVGAFYGRGKRGGKLSSLLMAAYDPDRDVFPTVCKVATGFTDEELDRMNEMLKKHIIPRKHP--RVESRIEPDVWVEPALVAEILGAELTLSPMHTCCLNTVRPGVGISIRFPRFIRWRDDKSPEDATTTHELLEMYKRQ 591          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRAE (DNA ligase OS=Pyrobaculum aerophilum GN=lig PE=3 SV=2)

HSP 1 Score: 156.762 bits (395), Expect = 1.338e-37
Identity = 77/170 (45.29%), Postives = 110/170 (64.71%), Query Frame = -2
Query:  288 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLI-RVREDKTPEQASSSEQVAEMYTAQK 794
            YE   R  NW+K K+DY   + D++DLV + AFHGRGKR G+YGAFLLA YD + + F ++CK+G+GF++A L++    L+   IP   P  R    +  DVWF P  V EV  A++T+SP+H   +G V P  G+++RFPR   R R DK+PEQA++  ++ E+Y  QK
Sbjct:  411 YEMGARGWNWIKYKRDYRSEMIDTVDLVVVGAFHGRGKRAGLYGAFLLAAYDPSTDMFYTVCKVGSGFTDADLKKMYEILQPFKIPHRHP--RVVSKMEADVWFVPQVVIEVIGAEITLSPLHTCCLGAVRPGVGLAVRFPRFTGRYRSDKSPEQATTVAEMLELYKRQK 578          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_CENSY (DNA ligase OS=Cenarchaeum symbiosum GN=lig PE=3 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 6.643e-37
Identity = 80/180 (44.44%), Postives = 113/180 (62.78%), Query Frame = -2
Query:  267 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLI-RVREDKTPEQASSSEQVAEMYTAQKLNHPNNQ 803
            DA Y    R   WLKLK++Y   +GDSLDLV I AF G+G+RTG YG  LLA YD + + F SICK+GTGF++  L++    L  +V  K  P  R    +  DVWF+P  V EV A+++T+SPVH+ A+  V    G++LRFP+   ++R +KT E AS+ ++V  +Y +QK   P+ Q
Sbjct:  409 DAPYRAGSRGGYWLKLKREYRNELGDSLDLVIIGAFFGKGRRTGRYGTLLLATYDDSRDTFPSICKVGTGFTDEDLDQLYQLLSPRVTLKRNP--RIDSGMEADVWFDPEVVMEVVASEITLSPVHKTALDSVRKGAGLALRFPKFTGKLRTEKTAEDASTDQEVIALYKSQKKVVPDGQ 586          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRAR (DNA ligase OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=lig PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 8.675e-37
Identity = 76/170 (44.71%), Postives = 111/170 (65.29%), Query Frame = -2
Query:  288 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLI-RVREDKTPEQASSSEQVAEMYTAQK 794
            YE   R  NW+K K+DY   + D++DLV + AF+GRGKR G+YGAFLLA YD +++ F ++CK+G+GF++A L++    L+   IP   P  R +  +  DVWF P  V EV  A++T+SP+H   +G V P  G+++RFPR   R R DK PEQA++  ++ E+Y  QK
Sbjct:  411 YEMGARGWNWIKYKRDYKSEMIDTVDLVVVGAFYGRGKRAGLYGAFLLAAYDPSSDMFYTVCKVGSGFTDADLKKMYEILQPLKIPHRHP--RVSSKMEADVWFVPQVVIEVIGAEITLSPLHTCCLGAVRPGVGLAVRFPRFTGRYRTDKGPEQATTVAEMLELYKRQK 578          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_SULAC (DNA ligase OS=Sulfolobus acidocaldarius GN=lig PE=3 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.480e-36
Identity = 72/172 (41.86%), Postives = 109/172 (63.37%), Query Frame = -2
Query:  291 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 806
            +D+ Y+   R   W+KLKKDY   + DS+DLV + AF+GRGKR G   + L+A YD + + F ++CK+ +GFS+A LEE    L    + K  P  R    I PD+W +P  V E+  A++T+SP+H    GVV  + G+S+RFPR IR R+DK+ E+A++  ++ EMY ++
Sbjct:  418 KDSIYQAGARGFLWIKLKKDYQSEMADSVDLVIVGAFYGRGKRGGKLSSLLMAAYDPDKDTFYTVCKVASGFSDAELEEVQKMLSEAKLDKKDP--RVESEIQPDIWVKPKYVAEIIGAEITLSPLHTCCKGVVSEEAGLSIRFPRFIRWRDDKSVEEATTPNEILEMYQSR 587          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI3_SCHPO (DNA ligase 3 OS=Schizosaccharomyces pombe GN=adl1 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.480e-36
Identity = 75/174 (43.10%), Postives = 116/174 (66.67%), Query Frame = -2
Query:  291 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSS--SLRSKVIPKPRPYYRFADT--ISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 800
            +TYEP KR   W+K+K+DY +   +SLDLVPI A++G G++ G +   LLA Y+ +   ++++CK  +GFS+   +E +   SL S      +P Y F +T  ++P ++F P EVWE+K A +T SP ++AA+G++  D+G+S+RFPR IRVR DK PE AS++  +A+MY  Q
Sbjct:  600 STYEPDKRGEGWIKVKQDYDDEF-ESLDLVPIGAWYGNGRKAGWFSPILLAVYNPDTGAYEAVCKCMSGFSDQFYKELTQKYSLESGN-SSLKPIYNFCETGKVTPQIYFAPQEVWEIKGAQITSSPAYKAALGLIQDDRGLSIRFPRFIRVRSDKGPEDASTNSILADMYMKQ 771          
The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DNLI_PICTO2.206e-4043.60DNA ligase OS=Picrophilus torridus GN=lig PE=3 SV=... [more]
DNLI_PYRCJ8.383e-4046.51DNA ligase OS=Pyrobaculum calidifontis (strain JCM... [more]
DNLI_THENV2.697e-3845.29DNA ligase OS=Thermoproteus neutrophilus (strain D... [more]
DNLI_PYRIL3.522e-3844.77DNA ligase OS=Pyrobaculum islandicum (strain DSM 4... [more]
DNLI_AERPE6.008e-3843.02DNA ligase OS=Aeropyrum pernix GN=lig PE=3 SV=2[more]
DNLI_PYRAE1.338e-3745.29DNA ligase OS=Pyrobaculum aerophilum GN=lig PE=3 S... [more]
DNLI_CENSY6.643e-3744.44DNA ligase OS=Cenarchaeum symbiosum GN=lig PE=3 SV... [more]
DNLI_PYRAR8.675e-3744.71DNA ligase OS=Pyrobaculum arsenaticum (strain DSM ... [more]
DNLI_SULAC1.480e-3641.86DNA ligase OS=Sulfolobus acidocaldarius GN=lig PE=... [more]
DNLI3_SCHPO1.480e-3643.10DNA ligase 3 OS=Schizosaccharomyces pombe GN=adl1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTTGAGATACTCAAAATCCAATTAGGATTAAATTTA
GAATGAAAATTATGACTCCTATACAGTATATCCAGGACCTTTCACGTCCA
GTTGACCACTAATGATGATAGGAATCATACATAAGATTTTTGGTTCTAAA
ACAGTTCTGATCAGATACATGGATTTGTGCAACAACCCAGCTGAATTTTA
CAAGAAAAGATCTTCAAAAATGAATGCAGCTTGAGATCCAGGCCTTCAAT
CATCTTCATTGTCATCTTGATTGTTTGGATGATTGAGTTTTTGAGCAGTA
TACATCTCTGCCACCTGCTCAGATGATGAAGCCTGCTCTGGGGTCTTGTC
TTCTCGAACACGAATTAGGCGAGGAAACCGGAGAGAAATGCCCTTATCAG
GATCCACAACACCAATGGCAGCACGATGAACAGGGCTAATAGTCAAGTCC
GCAGCTTTCACCTCCCAAACCTCTGTTGGCTCGAACCATACATCTGGACT
GATAGTATCAGCAAACCGGTAGTACGGCCTTGGTTTGGGTATAACTTTAG
AACGGAGACTGGAAGAACGTTCTTCAAGCATCGCTTCAGAAAATCCAGTG
CCTATTTTACATATGCTTTGAAATTCTTCATTATTGCTGTCATAACATGC
CAACAGAAAGGCACCATAAACACCTGTACGTTTCCCACGGCCATGAAATG
CAGCAATGGGTACTAAATCCAGCGAGTCTCCAATACTCTCAATGTAATCT
TTCTTTAATTTTAGCCAGTTAAGCGATCGCTTTGAAGGCTCATATGTAGC
ATCTCGA
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