CX078278

Overview
NameCX078278
Unique NameCX078278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_THEAC (DNA ligase OS=Thermoplasma acidophilum GN=lig PE=3 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.524e-36
Identity = 73/173 (42.20%), Postives = 109/173 (63.01%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLI-RVREDKTPEQASSSEQVAEMYTAQK 803
            D+ Y+   R   W+KLK+DY   + D+LDL  + AF+G G+R G YGA LLA Y+  N+ F+++CK+G+GFS+ +L         + + K +P  R    + PDVWF P  V EV  A++T+SP+H  A G ++ D G+S+RFPR   + REDK PE +++S ++ EMY  QK
Sbjct:  410 DSFYKAGARGWLWIKLKRDYQAQLWDTLDLTVVGAFYGHGRRKGTYGALLLATYNDKNDTFETVCKLGSGFSDDVLFSLPKKF-EQYVSKEKP-ARVISNLEPDVWFYPAVVMEVIGAEITVSPIHTCAYGEIEKDSGLSVRFPRFTGKWREDKKPEDSTTSREILEMYKEQK 580          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_THEVO (DNA ligase OS=Thermoplasma volcanium GN=lig PE=3 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.306e-36
Identity = 71/173 (41.04%), Postives = 113/173 (65.32%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLI-RVREDKTPEQASSSEQVAEMYTAQK 803
            D+ Y+   R   W+KLK+DY   + D++DL  + AF G G+R+G YGA LLA Y+  N+ F+++CK+G+GF++ +L        ++ + K +P  R   TI PDVW  P+ V E+  A++TISPVH  A G+++ D G+S+RFPR   + R+DK PE +++++++ EMY  QK
Sbjct:  410 DSYYKAGARGWLWIKLKRDYQAQLWDTIDLTVVGAFMGHGRRSGTYGALLLATYNEKNDTFETVCKLGSGFTDDVLFSLPKRF-AEFVSKEKP-ARVVSTIEPDVWIYPSIVMEIIGAEITISPVHTCAFGIIEKDAGLSIRFPRFTGKWRDDKKPEDSTTTQEIIEMYKEQK 580          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_SULSH (DNA ligase OS=Sulfolobus shibatae GN=lig PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 7.344e-36
Identity = 69/172 (40.12%), Postives = 108/172 (62.79%), Query Frame = -2
Query:  291 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 806
            +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S+RFPR IR R+DK+PE A++++++ EMY  Q
Sbjct:  418 KDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWIEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQ 587          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_SULIY (DNA ligase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=lig PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.592e-36
Identity = 69/172 (40.12%), Postives = 108/172 (62.79%), Query Frame = -2
Query:  291 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 806
            +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S+RFPR IR R+DK+PE A++++++ EMY  Q
Sbjct:  418 KDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQ 587          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_SULIN (DNA ligase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=lig PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.592e-36
Identity = 69/172 (40.12%), Postives = 108/172 (62.79%), Query Frame = -2
Query:  291 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 806
            +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S+RFPR IR R+DK+PE A++++++ EMY  Q
Sbjct:  418 KDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQ 587          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_SULIM (DNA ligase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=lig PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.592e-36
Identity = 69/172 (40.12%), Postives = 108/172 (62.79%), Query Frame = -2
Query:  291 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 806
            +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S+RFPR IR R+DK+PE A++++++ EMY  Q
Sbjct:  418 KDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQ 587          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_SULIL (DNA ligase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=lig PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.592e-36
Identity = 69/172 (40.12%), Postives = 108/172 (62.79%), Query Frame = -2
Query:  291 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 806
            +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S+RFPR IR R+DK+PE A++++++ EMY  Q
Sbjct:  418 KDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQ 587          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_SULIK (DNA ligase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=lig PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.592e-36
Identity = 69/172 (40.12%), Postives = 108/172 (62.79%), Query Frame = -2
Query:  291 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 806
            +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S+RFPR IR R+DK+PE A++++++ EMY  Q
Sbjct:  418 KDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQ 587          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_SULIA (DNA ligase OS=Sulfolobus islandicus (strain M.16.27) GN=lig PE=3 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 9.592e-36
Identity = 69/172 (40.12%), Postives = 108/172 (62.79%), Query Frame = -2
Query:  291 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 806
            +DA Y+   R   W+KLK+DY   + D++DLV +  F+G+GKR G   + L+A Y+   + F+S+CK+ +GFS+  L+E    L    I +   + R    + PD+W EP  V E+  A++TISP+H     VV+ D G+S+RFPR IR R+DK+PE A++++++ EMY  Q
Sbjct:  418 KDAIYQAGARGWLWIKLKRDYQSEMADTVDLVVVGGFYGKGKRGGKISSLLMAAYNPKTDTFESVCKVASGFSDEQLDELQKKLME--IKRDIKHPRVNSKMEPDIWVEPVYVAEIIGAEITISPLHTCCQDVVEKDAGLSIRFPRFIRWRDDKSPEDATTTDEILEMYNKQ 587          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_STAMF (DNA ligase OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=lig PE=3 SV=2)

HSP 1 Score: 150.599 bits (379), Expect = 9.592e-36
Identity = 71/172 (41.28%), Postives = 109/172 (63.37%), Query Frame = -2
Query:  291 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 806
            ++A Y+   R   W+K K+DY   + D++DLV I AF+GRG+R G YGA L+A Y+ + + F+S+CK+G+GF +  +++    L+  +I    P  R    + PDVW  P  V E+  A+LT+SP+H   + ++ P  GIS+RFPR IR R DK PE A++S+++ EMY  Q
Sbjct:  422 KNAIYQAGTRGWLWIKYKRDYKSEMIDTVDLVVIGAFYGRGRRGGKYGALLMASYNPDKDVFESVCKVGSGFKDEDIDKLPEMLKPYIIEHKHP--RVVARMKPDVWVTPALVAEIIGAELTLSPLHTCCLDIIKPGVGISIRFPRFIRWRPDKGPEDATTSQELLEMYKRQ 591          
The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DNLI_THEAC2.524e-3642.20DNA ligase OS=Thermoplasma acidophilum GN=lig PE=3... [more]
DNLI_THEVO4.306e-3641.04DNA ligase OS=Thermoplasma volcanium GN=lig PE=3 S... [more]
DNLI_SULSH7.344e-3640.12DNA ligase OS=Sulfolobus shibatae GN=lig PE=3 SV=1[more]
DNLI_SULIY9.592e-3640.12DNA ligase OS=Sulfolobus islandicus (strain Y.G.57... [more]
DNLI_SULIN9.592e-3640.12DNA ligase OS=Sulfolobus islandicus (strain Y.N.15... [more]
DNLI_SULIM9.592e-3640.12DNA ligase OS=Sulfolobus islandicus (strain M.14.2... [more]
DNLI_SULIL9.592e-3640.12DNA ligase OS=Sulfolobus islandicus (strain L.S.2.... [more]
DNLI_SULIK9.592e-3640.12DNA ligase OS=Sulfolobus islandicus (strain M.16.4... [more]
DNLI_SULIA9.592e-3640.12DNA ligase OS=Sulfolobus islandicus (strain M.16.2... [more]
DNLI_STAMF9.592e-3641.28DNA ligase OS=Staphylothermus marinus (strain ATCC... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTTGAGATACTCAAAATCCAATTAGGATTAAATTTA
GAATGAAAATTATGACTCCTATACAGTATATCCAGGACCTTTCACGTCCA
GTTGACCACTAATGATGATAGGAATCATACATAAGATTTTTGGTTCTAAA
ACAGTTCTGATCAGATACATGGATTTGTGCAACAACCCAGCTGAATTTTA
CAAGAAAAGATCTTCAAAAATGAATGCAGCTTGAGATCCAGGCCTTCAAT
CATCTTCATTGTCATCTTGATTGTTTGGATGATTGAGTTTTTGAGCAGTA
TACATCTCTGCCACCTGCTCAGATGATGAAGCCTGCTCTGGGGTCTTGTC
TTCTCGAACACGAATTAGGCGAGGAAACCGGAGAGAAATGCCCTTATCAG
GATCCACAACACCAATGGCAGCACGATGAACAGGGCTAATAGTCAAGTCC
GCAGCTTTCACCTCCCAAACCTCTGTTGGCTCGAACCATACATCTGGACT
GATAGTATCAGCAAACCGGTAGTACGGCCTTGGTTTGGGTATAACTTTAG
AACGGAGACTGGAAGAACGTTCTTCAAGCATCGCTTCAGAAAATCCAGTG
CCTATTTTACATATGCTTTGAAATTCTTCATTATTGCTGTCATAACATGC
CAACAGAAAGGCACCATAAACACCTGTACGTTTCCCACGGCCATGAAATG
CAGCAATGGGTACTAAATCCAGCGAGTCTCCAATACTCTCAATGTAATCT
TTCTTTAATTTTAGCCAGTTAAGCGATCGCTTTGAAGGCTCATATGTAGC
ATCTCGA
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