CX078278

Overview
NameCX078278
Unique NameCX078278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_IGNH4 (DNA ligase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=lig PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.872e-31
Identity = 65/170 (38.24%), Postives = 99/170 (58.24%), Query Frame = -2
Query:  291 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 800
            + Y+   R   W+K KKDY   + + +DLV + AF+GRG+R G +GA L+A YD   + F ++CK+G+GFS+  L      L+  +     P  R    + PDVW  P  V E+  A++T+SP+H  A   V    G+++RFPR IR R DK PE A++  ++ EMY ++
Sbjct:  419 SVYQAGARGWLWIKYKKDYKSEMVEPVDLVVVGAFYGRGRRGGTFGALLVAGYDEKRDAFATVCKVGSGFSDEELARLPELLKPYISETKPP--RVISNVKPDVWVRPALVAEIIGAEITLSPIHTCAKDEVSAGSGLAIRFPRFIRWRPDKGPEDATTCGEIVEMYKSR 586          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI2_KORCO (DNA ligase 2 OS=Korarchaeum cryptofilum (strain OPF8) GN=lig2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.937e-28
Identity = 61/168 (36.31%), Postives = 96/168 (57.14%), Query Frame = -2
Query:  291 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 794
            Y+   R  +W+KLK+ YI  + + +DLV + AF G+GKR G YGA L+A Y    + F+++CK+G+GF++  L      L    I    P       I  DV+F P +V +V   ++T+SP H      V  + G+++RFPR +  R+DK P+ A++ E++ EMY  Q
Sbjct:  414 YQAGVRGWSWIKLKRSYISKMIEPVDLVVVGAFWGKGKRAGTYGALLMAAYSPEEDVFKTVCKMGSGFTDEELARMPKLLEDYKIDHKHP--SVISNIEADVYFVPVKVAQVLGDEITLSPTHTCGWNKVRKNAGLAIRFPRFMGWRDDKGPQDATTEEEIIEMYKEQ 579          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_METMA (DNA ligase 1 OS=Methanosarcina mazei GN=lig1 PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.771e-27
Identity = 60/164 (36.59%), Postives = 99/164 (60.37%), Query Frame = -2
Query:  303 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 794
            YE  KRS  W K K++Y E + ++ DLV + +++GRG+R G +GA L A  +   + F+++ K+GTGF+EA  EE +  L   ++ +          + PD++ EP  V EV  +++T SP H A  G  + + G++LRFPR +R+R DKTP  A + ++V ++
Sbjct:  414 YEAGKRSWFWFKWKQEYSEGMRETFDLVVVGSYYGRGRRKGSFGALLCAVLNKEGQRFETLTKVGTGFTEADAEEINRLLSDHIVSEIPKGVSIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGEG--EEETGLALRFPRFLRIRHDKTPYDAMTVKEVRDL 575          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_METAC (DNA ligase 1 OS=Methanosarcina acetivorans GN=lig1 PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 6.232e-27
Identity = 59/167 (35.33%), Postives = 102/167 (61.08%), Query Frame = -2
Query:  303 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 803
            ++ YE  KRS  WLK K++Y E + ++ DLV + +++G+GKR G +GA L A  +   ++F++  K+GTGF+EA  EE +S L +  + +          + PD++ EP  V EV  +++T SP H A  G  + + G++LRFPR +R+R D+ P  A++  ++ ++
Sbjct:  412 NSVYEAGKRSWLWLKWKQEYSEGMRETFDLVVVGSYYGKGKRKGSFGALLCAVLNEEEQQFETFTKVGTGFTEADAEEINSLLSAHTVSEAPKNVIIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGEG--EEETGLALRFPRFLRIRYDRAPFDATTVREIRDL 576          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_METBF (DNA ligase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=lig1 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.813e-26
Identity = 62/168 (36.90%), Postives = 97/168 (57.74%), Query Frame = -2
Query:  303 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 806
            R++ YE  KRS  WLK K++Y   + ++ DL  I  ++GRGKR G +GA L A  +   + F++  K+GTGF+EA  +E  S L   +I +          + PD++ EP+ V EV  +++T SP H A  G  + D G++LRFPR +R+R DK P   ++  +V  +
Sbjct:  378 RNSAYEAGKRSWFWLKWKEEYASGMRETFDLAIIGKYYGRGKRKGSFGALLCAILNGEEQRFETFTKVGTGFTEADAKEIDSLLSEHIISEVPKNVLIKSRMLPDIFVEPSLVIEVLGSEITESPSHTAGQG--EGDTGLALRFPRFLRIRHDKGPYDITTLTEVRNL 543          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_DICTD (Probable DNA ligase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=lig PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 9.312e-23
Identity = 69/185 (37.30%), Postives = 96/185 (51.89%), Query Frame = -2
Query:  258 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV-YGAFLLACYDSNNEEFQSICKIGTG-FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIR-VREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDN 803
            DA Y+   R+ NW+KLK+ Y   + D++D V +  F GRG R     GA L+  YD   + F+++ KIGTG   E  +  R      K+  KP         I PDVW EP  V  ++A ++T SPVH    G      G +LRFPR+I  VREDK P  A++ +++ EM+  QK        DN
Sbjct:  402 DAPYQAGIRNFNWIKLKRSYQGHLADTVDCVILGYFKGRGHRAKFGIGALLVGVYDDERDLFKTVAKIGTGPTEEEWVRFREVLDEIKLESKPN---NVESLIEPDVWVEPKYVVVIQADEITRSPVH--TCGRELDGLGYALRFPRVIGFVREDKGPYDATTVKEILEMFRGQKKEKVEEDSDN 581          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_DICT6 (Probable DNA ligase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=lig PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 6.036e-22
Identity = 70/184 (38.04%), Postives = 96/184 (52.17%), Query Frame = -2
Query:  261 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV-YGAFLLACYDSNNEEFQSICKIGTG-FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIR-VREDKTPEQASSSEQVAEMYTAQKLNHPNNQDD 803
            DA Y+   R+ NW+KLK+ Y   + D++D V +  F GRG R     GA L+  YD   + F++I KIGTG   E  ++ R      KV  +P     F   I PDVW EP  V  V+A ++T SPVH    G      G +LRFPR+   VREDK P  A++ +++ EM+  QK        D
Sbjct:  402 DAPYQAGMRNFNWIKLKRSYQGHLADTVDCVILGYFKGRGHRAKFGIGALLVGVYDDERDLFKTIAKIGTGPTEEEWVKFREILDEIKVEKRPNNVESF---IEPDVWVEPKYVVVVQADEITRSPVH--TCGRELDGLGYALRFPRVQGFVREDKGPYDATTVKEILEMFRNQKKEKVEEDSD 580          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRFU (DNA ligase OS=Pyrococcus furiosus GN=lig PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.996e-21
Identity = 59/172 (34.30%), Postives = 91/172 (52.91%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            DA YEP  R   WLK+K        ++LDLV I A  G G+R  ++G+F+L  YD    EF  + K+G+GF++  L E +  L+  +I +              VW +P  V EV   ++  SP +R+         G +LRFPR + +R+DK PE A + E++A++Y  Q+
Sbjct:  406 DAVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLFGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIIKEE----------GKRVWLQPKVVIEVTYQEIQKSPKYRS---------GFALRFPRFVALRDDKGPEDADTIERIAQLYELQE 553          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_FOWPV (DNA ligase OS=Fowlpox virus GN=LIG PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21
Identity = 59/176 (33.52%), Postives = 97/176 (55.11%), Query Frame = -2
Query:  300 YEPSKRSLNWLKLKKDYIES--IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPR---------PYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMY 794
            YEP  R   WLK+KKDY++   + D  DLV + A++G+G ++G+  +FL+ CYD+ +E++ ++ K   G ++  L+E + +L   V+P  R             + D I  D+   P  VWE+  ++ T S  H A+         IS+RFPR  R+REDKT E A++   + ++Y
Sbjct:  394 YEPGMR--RWLKIKKDYLDGCVMADKADLVVLGAYYGKGNKSGILSSFLMGCYDTKSEKWCTVTKCSGGHTDLELQEINDNL--SVVPFDRNAIPDWLSINKIHYPDVIISDISLAP--VWEIIGSEFTRSSTHTAS--------NISIRFPRCSRIREDKTYETANNLNDIKQLY 555          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRAB (DNA ligase OS=Pyrococcus abyssi GN=lig PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21
Identity = 60/172 (34.88%), Postives = 90/172 (52.33%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            DA YEP  R   WLK+K        ++LDLV I A  G G+R  + G+F+L  YD    EF  + K+G+GF++  L E +  L+  +I +              VW +P  V EV   ++  SP +R+         G +LRFPR + +REDK PE A + E++A++Y  Q+
Sbjct:  406 DAVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLLGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIIKEE----------GKRVWIQPKVVIEVTYQEIQKSPKYRS---------GFALRFPRYVALREDKGPEDADTIERIAQLYELQE 553          
The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DNLI_IGNH41.872e-3138.24DNA ligase OS=Ignicoccus hospitalis (strain KIN4/I... [more]
DNLI2_KORCO1.937e-2836.31DNA ligase 2 OS=Korarchaeum cryptofilum (strain OP... [more]
DNLI1_METMA4.771e-2736.59DNA ligase 1 OS=Methanosarcina mazei GN=lig1 PE=3 ... [more]
DNLI1_METAC6.232e-2735.33DNA ligase 1 OS=Methanosarcina acetivorans GN=lig1... [more]
DNLI1_METBF1.813e-2636.90DNA ligase 1 OS=Methanosarcina barkeri (strain Fus... [more]
DNLI_DICTD9.312e-2337.30Probable DNA ligase OS=Dictyoglomus turgidum (stra... [more]
DNLI_DICT66.036e-2238.04Probable DNA ligase OS=Dictyoglomus thermophilum (... [more]
DNLI_PYRFU2.996e-2134.30DNA ligase OS=Pyrococcus furiosus GN=lig PE=1 SV=1[more]
DNLI_FOWPV3.912e-2133.52DNA ligase OS=Fowlpox virus GN=LIG PE=3 SV=2[more]
DNLI_PYRAB5.110e-2134.88DNA ligase OS=Pyrococcus abyssi GN=lig PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTTGAGATACTCAAAATCCAATTAGGATTAAATTTA
GAATGAAAATTATGACTCCTATACAGTATATCCAGGACCTTTCACGTCCA
GTTGACCACTAATGATGATAGGAATCATACATAAGATTTTTGGTTCTAAA
ACAGTTCTGATCAGATACATGGATTTGTGCAACAACCCAGCTGAATTTTA
CAAGAAAAGATCTTCAAAAATGAATGCAGCTTGAGATCCAGGCCTTCAAT
CATCTTCATTGTCATCTTGATTGTTTGGATGATTGAGTTTTTGAGCAGTA
TACATCTCTGCCACCTGCTCAGATGATGAAGCCTGCTCTGGGGTCTTGTC
TTCTCGAACACGAATTAGGCGAGGAAACCGGAGAGAAATGCCCTTATCAG
GATCCACAACACCAATGGCAGCACGATGAACAGGGCTAATAGTCAAGTCC
GCAGCTTTCACCTCCCAAACCTCTGTTGGCTCGAACCATACATCTGGACT
GATAGTATCAGCAAACCGGTAGTACGGCCTTGGTTTGGGTATAACTTTAG
AACGGAGACTGGAAGAACGTTCTTCAAGCATCGCTTCAGAAAATCCAGTG
CCTATTTTACATATGCTTTGAAATTCTTCATTATTGCTGTCATAACATGC
CAACAGAAAGGCACCATAAACACCTGTACGTTTCCCACGGCCATGAAATG
CAGCAATGGGTACTAAATCCAGCGAGTCTCCAATACTCTCAATGTAATCT
TTCTTTAATTTTAGCCAGTTAAGCGATCGCTTTGAAGGCTCATATGTAGC
ATCTCGA
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