CX078278
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_IGNH4 (DNA ligase OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=lig PE=3 SV=1) HSP 1 Score: 136.346 bits (342), Expect = 1.872e-31 Identity = 65/170 (38.24%), Postives = 99/170 (58.24%), Query Frame = -2 Query: 291 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 800 + Y+ R W+K KKDY + + +DLV + AF+GRG+R G +GA L+A YD + F ++CK+G+GFS+ L L+ + P R + PDVW P V E+ A++T+SP+H A V G+++RFPR IR R DK PE A++ ++ EMY ++ Sbjct: 419 SVYQAGARGWLWIKYKKDYKSEMVEPVDLVVVGAFYGRGRRGGTFGALLVAGYDEKRDAFATVCKVGSGFSDEELARLPELLKPYISETKPP--RVISNVKPDVWVRPALVAEIIGAEITLSPIHTCAKDEVSAGSGLAIRFPRFIRWRPDKGPEDATTCGEIVEMYKSR 586
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI2_KORCO (DNA ligase 2 OS=Korarchaeum cryptofilum (strain OPF8) GN=lig2 PE=3 SV=1) HSP 1 Score: 126.331 bits (316), Expect = 1.937e-28 Identity = 61/168 (36.31%), Postives = 96/168 (57.14%), Query Frame = -2 Query: 291 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 794 Y+ R +W+KLK+ YI + + +DLV + AF G+GKR G YGA L+A Y + F+++CK+G+GF++ L L I P I DV+F P +V +V ++T+SP H V + G+++RFPR + R+DK P+ A++ E++ EMY Q Sbjct: 414 YQAGVRGWSWIKLKRSYISKMIEPVDLVVVGAFWGKGKRAGTYGALLMAAYSPEEDVFKTVCKMGSGFTDEELARMPKLLEDYKIDHKHP--SVISNIEADVYFVPVKVAQVLGDEITLSPTHTCGWNKVRKNAGLAIRFPRFMGWRDDKGPQDATTEEEIIEMYKEQ 579
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_METMA (DNA ligase 1 OS=Methanosarcina mazei GN=lig1 PE=3 SV=1) HSP 1 Score: 121.709 bits (304), Expect = 4.771e-27 Identity = 60/164 (36.59%), Postives = 99/164 (60.37%), Query Frame = -2 Query: 303 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 794 YE KRS W K K++Y E + ++ DLV + +++GRG+R G +GA L A + + F+++ K+GTGF+EA EE + L ++ + + PD++ EP V EV +++T SP H A G + + G++LRFPR +R+R DKTP A + ++V ++ Sbjct: 414 YEAGKRSWFWFKWKQEYSEGMRETFDLVVVGSYYGRGRRKGSFGALLCAVLNKEGQRFETLTKVGTGFTEADAEEINRLLSDHIVSEIPKGVSIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGEG--EEETGLALRFPRFLRIRHDKTPYDAMTVKEVRDL 575
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_METAC (DNA ligase 1 OS=Methanosarcina acetivorans GN=lig1 PE=3 SV=1) HSP 1 Score: 121.324 bits (303), Expect = 6.232e-27 Identity = 59/167 (35.33%), Postives = 102/167 (61.08%), Query Frame = -2 Query: 303 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 803 ++ YE KRS WLK K++Y E + ++ DLV + +++G+GKR G +GA L A + ++F++ K+GTGF+EA EE +S L + + + + PD++ EP V EV +++T SP H A G + + G++LRFPR +R+R D+ P A++ ++ ++ Sbjct: 412 NSVYEAGKRSWLWLKWKQEYSEGMRETFDLVVVGSYYGKGKRKGSFGALLCAVLNEEEQQFETFTKVGTGFTEADAEEINSLLSAHTVSEAPKNVIIKKGMLPDIFIEPAVVIEVLGSEITNSPGHTAGEG--EEETGLALRFPRFLRIRYDRAPFDATTVREIRDL 576
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_METBF (DNA ligase 1 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=lig1 PE=3 SV=1) HSP 1 Score: 119.783 bits (299), Expect = 1.813e-26 Identity = 62/168 (36.90%), Postives = 97/168 (57.74%), Query Frame = -2 Query: 303 RDATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 806 R++ YE KRS WLK K++Y + ++ DL I ++GRGKR G +GA L A + + F++ K+GTGF+EA +E S L +I + + PD++ EP+ V EV +++T SP H A G + D G++LRFPR +R+R DK P ++ +V + Sbjct: 378 RNSAYEAGKRSWFWLKWKEEYASGMRETFDLAIIGKYYGRGKRKGSFGALLCAILNGEEQRFETFTKVGTGFTEADAKEIDSLLSEHIISEVPKNVLIKSRMLPDIFVEPSLVIEVLGSEITESPSHTAGQG--EGDTGLALRFPRFLRIRHDKGPYDITTLTEVRNL 543
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_DICTD (Probable DNA ligase OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=lig PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 9.312e-23 Identity = 69/185 (37.30%), Postives = 96/185 (51.89%), Query Frame = -2 Query: 258 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV-YGAFLLACYDSNNEEFQSICKIGTG-FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIR-VREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDN 803 DA Y+ R+ NW+KLK+ Y + D++D V + F GRG R GA L+ YD + F+++ KIGTG E + R K+ KP I PDVW EP V ++A ++T SPVH G G +LRFPR+I VREDK P A++ +++ EM+ QK DN Sbjct: 402 DAPYQAGIRNFNWIKLKRSYQGHLADTVDCVILGYFKGRGHRAKFGIGALLVGVYDDERDLFKTVAKIGTGPTEEEWVRFREVLDEIKLESKPN---NVESLIEPDVWVEPKYVVVIQADEITRSPVH--TCGRELDGLGYALRFPRVIGFVREDKGPYDATTVKEILEMFRGQKKEKVEEDSDN 581
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_DICT6 (Probable DNA ligase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=lig PE=3 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 6.036e-22 Identity = 70/184 (38.04%), Postives = 96/184 (52.17%), Query Frame = -2 Query: 261 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGV-YGAFLLACYDSNNEEFQSICKIGTG-FSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIR-VREDKTPEQASSSEQVAEMYTAQKLNHPNNQDD 803 DA Y+ R+ NW+KLK+ Y + D++D V + F GRG R GA L+ YD + F++I KIGTG E ++ R KV +P F I PDVW EP V V+A ++T SPVH G G +LRFPR+ VREDK P A++ +++ EM+ QK D Sbjct: 402 DAPYQAGMRNFNWIKLKRSYQGHLADTVDCVILGYFKGRGHRAKFGIGALLVGVYDDERDLFKTIAKIGTGPTEEEWVKFREILDEIKVEKRPNNVESF---IEPDVWVEPKYVVVVQADEITRSPVH--TCGRELDGLGYALRFPRVQGFVREDKGPYDATTVKEILEMFRNQKKEKVEEDSD 580
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRFU (DNA ligase OS=Pyrococcus furiosus GN=lig PE=1 SV=1) HSP 1 Score: 102.449 bits (254), Expect = 2.996e-21 Identity = 59/172 (34.30%), Postives = 91/172 (52.91%), Query Frame = -2 Query: 288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803 DA YEP R WLK+K ++LDLV I A G G+R ++G+F+L YD EF + K+G+GF++ L E + L+ +I + VW +P V EV ++ SP +R+ G +LRFPR + +R+DK PE A + E++A++Y Q+ Sbjct: 406 DAVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLFGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIIKEE----------GKRVWLQPKVVIEVTYQEIQKSPKYRS---------GFALRFPRFVALRDDKGPEDADTIERIAQLYELQE 553
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_FOWPV (DNA ligase OS=Fowlpox virus GN=LIG PE=3 SV=2) HSP 1 Score: 102.064 bits (253), Expect = 3.912e-21 Identity = 59/176 (33.52%), Postives = 97/176 (55.11%), Query Frame = -2 Query: 300 YEPSKRSLNWLKLKKDYIES--IGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPR---------PYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMY 794 YEP R WLK+KKDY++ + D DLV + A++G+G ++G+ +FL+ CYD+ +E++ ++ K G ++ L+E + +L V+P R + D I D+ P VWE+ ++ T S H A+ IS+RFPR R+REDKT E A++ + ++Y Sbjct: 394 YEPGMR--RWLKIKKDYLDGCVMADKADLVVLGAYYGKGNKSGILSSFLMGCYDTKSEKWCTVTKCSGGHTDLELQEINDNL--SVVPFDRNAIPDWLSINKIHYPDVIISDISLAP--VWEIIGSEFTRSSTHTAS--------NISIRFPRCSRIREDKTYETANNLNDIKQLY 555
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRAB (DNA ligase OS=Pyrococcus abyssi GN=lig PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.110e-21 Identity = 60/172 (34.88%), Postives = 90/172 (52.33%), Query Frame = -2 Query: 288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803 DA YEP R WLK+K ++LDLV I A G G+R + G+F+L YD EF + K+G+GF++ L E + L+ +I + VW +P V EV ++ SP +R+ G +LRFPR + +REDK PE A + E++A++Y Q+ Sbjct: 406 DAVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLLGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIIKEE----------GKRVWIQPKVVIEVTYQEIQKSPKYRS---------GFALRFPRYVALREDKGPEDADTIERIAQLYELQE 553 The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bpback to top |