CX078278
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRKO (DNA ligase OS=Pyrococcus kodakaraensis GN=lig PE=1 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.487e-20 Identity = 60/172 (34.88%), Postives = 95/172 (55.23%), Query Frame = -2 Query: 288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803 D+ YEP R WLK+K ++LDLV I A G G+R + G+FL+A YD ++ EF + K+G+GF++ L E + L+ ++ + + V EP V EV ++ SP +++ G +LRFPR + +REDK+PE+A + E+VAE+Y Q+ Sbjct: 406 DSIYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLLGSFLVAAYDPHSGEFLPVGKVGSGFTDEDLVEFTKMLKPYIVRQEGKF----------VEIEPKFVIEVTYQEIQKSPKYKS---------GFALRFPRYVALREDKSPEEADTIERVAELYELQE 553
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI3_HUMAN (DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2) HSP 1 Score: 99.7525 bits (247), Expect = 1.942e-20 Identity = 63/183 (34.43%), Postives = 96/183 (52.46%), Query Frame = -2 Query: 288 TYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP-----------RPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 797 TYEP KR +WLK+KKDY+ ++ D+ DLV + AF+G+G + G+ FL+ CYD ++++ ++ K G +A L + L I K + YY D I PD + VWE+ A+ + S H A GIS+RFPR R+R+DK + A++ Q+ E+Y K Sbjct: 665 TYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYY--PDFIVPDP--KKAAVWEITGAEFSKSEAHTA--------DGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSK 833
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_THEFM (DNA ligase OS=Thermococcus fumicolans GN=lig PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.312e-20 Identity = 58/172 (33.72%), Postives = 92/172 (53.49%), Query Frame = -2 Query: 288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803 D+ YEP R WLK+K + LDLV I A G G+R + G+FL+A YD + EF + K+G+GF++ L E + L+ ++ + Y V EP V +V ++ SP + + G +LRFPR + +REDK+PE+A + E+++E+Y Q+ Sbjct: 406 DSVYEPGNRGKKWLKIKPTM-----EDLDLVIIGAEWGEGRRAHLLGSFLVAAYDQHRGEFVPVGKVGSGFTDEDLAEFTKMLKPLIVREEGKY----------VEIEPRVVIQVTYQEIQKSPKY---------ESGFALRFPRYVALREDKSPEEADTIERISELYGLQE 553
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METBU (DNA ligase OS=Methanococcoides burtonii (strain DSM 6242) GN=lig PE=3 SV=1) HSP 1 Score: 97.0561 bits (240), Expect = 1.259e-19 Identity = 58/172 (33.72%), Postives = 92/172 (53.49%), Query Frame = -2 Query: 288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803 +A+Y P KR NWLK K I ++LDLV IAA G GKR + G++ LAC+D + +F I K+ TGFS+ L E + +I + ++ +P V+E+ ++ S + G +LRFPRL+ VREDK+PE+A + +++ +Y +Q+ Sbjct: 419 EASYSPGKRGKNWLKKKP-----IMETLDLVVIAAEWGYGKRANLIGSYALACFDPEDGKFLPIGKVATGFSDEQLAELTEVFSELIIGES----------GREIELKPDVVFEIAFEEIQKS---------TNYGSGYALRFPRLVNVREDKSPEEAETIDRIESIYLSQR 566
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_VACCA (DNA ligase OS=Vaccinia virus (strain Ankara) GN=LIG PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19 Identity = 59/168 (35.12%), Postives = 93/168 (55.36%), Query Frame = -2 Query: 327 DATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVI---PKPRPYYRFADTI-SPDVWFE---PTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQAS 803 + YEP KR WLK+K+DY+ S+ DS DLV + A++G+G + G+ FL+ CYD + +++++ K +G + L E L+ I PK P + + I PD E +++WE+ A+ T S H A GIS+RFPR R+REDKT ++++ Sbjct: 385 NGVYEPGKR--RWLKIKRDYLNEGSMADSADLVVLGAYYGKGAKGGIMAVFLMGCYDDESGKWKTVTKC-SGHDDNTLRELQDQLKMIKINKDPKKIPEWLVVNKIYIPDFVVEDPKQSQIWEISGAEFTSSKSHTA--------NGISIRFPRFTRIREDKTWKEST 541
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRHO (Probable thermostable DNA ligase OS=Pyrococcus horikoshii GN=lig PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19 Identity = 57/172 (33.14%), Postives = 90/172 (52.33%), Query Frame = -2 Query: 288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803 DA YEP R WLK+K ++LDLV I A G G+R ++G+F+L YD EF + K+G+GF++ L E + L+ ++ + V +P V EV ++ SP +R+ G +LRFPR + +R+DK PE A + E++A++Y Q+ Sbjct: 406 DAVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLFGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIVKEE----------GKRVVIQPKIVIEVTYQEIQKSPKYRS---------GFALRFPRYVALRDDKGPEDADTIERIAQLYELQE 553
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METTP (DNA ligase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=lig PE=3 SV=1) HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19 Identity = 58/171 (33.92%), Postives = 90/171 (52.63%), Query Frame = -2 Query: 288 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 800 +TY P KR NWLK+K + +SLDLV I A G GKR + G++ LAC D++ E + + + TG ++ ML E + R ++ + +V P V+EV ++ SP + G +LRFPRLI VR+DK+P +A + E++ E+Y Q+ Sbjct: 401 STYTPGKRGKNWLKIKP-----LLESLDLVVIGARWGEGKRANLLGSYRLACIDTDTGELKDVGWVATGITDEMLAELTELFRELIVKEN----------GMEVEVHPEIVFEVGYEEIQRSPNY---------SSGYALRFPRLIAVRDDKSPSEADTLERIGEIYRLQR 547
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_VACCC (DNA ligase OS=Vaccinia virus (strain Copenhagen) GN=LIG PE=1 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19 Identity = 56/168 (33.33%), Postives = 96/168 (57.14%), Query Frame = -2 Query: 327 DATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPRPYYRFADTI-SPDVWFE---PTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQAS 803 + YEP KR WLK+K+DY+ S+ DS DLV + A++G+G + G+ FL+ CYD + +++++ K +G + +L+++ + ++ PK P + + I PD E +++WE+ A+ T S H A GIS+RFPR R+REDKT ++++ Sbjct: 385 NGVYEPGKR--RWLKIKRDYLNEGSMADSADLVVLGAYYGKGAKGGIMAVFLMGCYDDESGKWKTVTKC-SGHDDNTLRVLQDQLTMIKINKDPKKIPEWLVVNKIYIPDFVVEDPKQSQIWEISGAEFTSSKSHTA--------NGISIRFPRFTRIREDKTWKEST 541
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_VARV (DNA ligase OS=Variola virus GN=LIG PE=3 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.246e-19 Identity = 56/168 (33.33%), Postives = 96/168 (57.14%), Query Frame = -2 Query: 327 DATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPRPYYRFADTI-SPDVWFE---PTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQAS 803 + YEP KR WLK+K+DY+ S+ DS DLV + A++G+G + G+ FL+ CYD + +++++ K +G + +L+++ + ++ PK P + + I PD E +++WE+ A+ T S H A GIS+RFPR R+REDKT ++++ Sbjct: 385 NGVYEPGKR--RWLKIKRDYLNEGSMADSADLVVLGAYYGKGAKGGIMAVFLMGCYDDESGKWKTVTKC-SGHDDNTLRVLQDQLTMVKINKDPKKIPEWLVVNKIYIPDFVVEDPKQSQIWEISGAEFTSSKSHTA--------NGISIRFPRFTRIREDKTWKEST 541
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_VACCW (DNA ligase OS=Vaccinia virus (strain Western Reserve) GN=LIG PE=1 SV=1) HSP 1 Score: 94.7449 bits (234), Expect = 6.246e-19 Identity = 56/168 (33.33%), Postives = 96/168 (57.14%), Query Frame = -2 Query: 327 DATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPRPYYRFADTI-SPDVWFE---PTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQAS 803 + YEP KR WLK+K+DY+ S+ DS DLV + A++G+G + G+ FL+ CYD + +++++ K +G + +L+++ + ++ PK P + + I PD E +++WE+ A+ T S H A GIS+RFPR R+REDKT ++++ Sbjct: 385 NGVYEPGKR--RWLKIKRDYLNEGSMADSADLVVLGAYYGKGAKGGIMAVFLMGCYDDESGKWKTVTKC-SGHDDNTLRVLQDQLTMVKINKDPKKIPEWLVVNKIYIPDFVVEDPKQSQIWEISGAEFTSSKSHTA--------NGISIRFPRFTRIREDKTWKEST 541 The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bpback to top |