CX078278

Overview
NameCX078278
Unique NameCX078278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRKO (DNA ligase OS=Pyrococcus kodakaraensis GN=lig PE=1 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.487e-20
Identity = 60/172 (34.88%), Postives = 95/172 (55.23%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            D+ YEP  R   WLK+K        ++LDLV I A  G G+R  + G+FL+A YD ++ EF  + K+G+GF++  L E +  L+  ++ +   +          V  EP  V EV   ++  SP +++         G +LRFPR + +REDK+PE+A + E+VAE+Y  Q+
Sbjct:  406 DSIYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLLGSFLVAAYDPHSGEFLPVGKVGSGFTDEDLVEFTKMLKPYIVRQEGKF----------VEIEPKFVIEVTYQEIQKSPKYKS---------GFALRFPRYVALREDKSPEEADTIERVAELYELQE 553          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI3_HUMAN (DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2)

HSP 1 Score: 99.7525 bits (247), Expect = 1.942e-20
Identity = 63/183 (34.43%), Postives = 96/183 (52.46%), Query Frame = -2
Query:  288 TYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP-----------RPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 797
            TYEP KR  +WLK+KKDY+   ++ D+ DLV + AF+G+G + G+   FL+ CYD  ++++ ++ K   G  +A L    + L    I K            + YY   D I PD   +   VWE+  A+ + S  H A         GIS+RFPR  R+R+DK  + A++  Q+ E+Y   K
Sbjct:  665 TYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPGSQKWCTVTKCAGGHDDATLARLQNELDMVKISKDPSKIPSWLKVNKIYY--PDFIVPDP--KKAAVWEITGAEFSKSEAHTA--------DGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSK 833          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_THEFM (DNA ligase OS=Thermococcus fumicolans GN=lig PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.312e-20
Identity = 58/172 (33.72%), Postives = 92/172 (53.49%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            D+ YEP  R   WLK+K        + LDLV I A  G G+R  + G+FL+A YD +  EF  + K+G+GF++  L E +  L+  ++ +   Y          V  EP  V +V   ++  SP +         + G +LRFPR + +REDK+PE+A + E+++E+Y  Q+
Sbjct:  406 DSVYEPGNRGKKWLKIKPTM-----EDLDLVIIGAEWGEGRRAHLLGSFLVAAYDQHRGEFVPVGKVGSGFTDEDLAEFTKMLKPLIVREEGKY----------VEIEPRVVIQVTYQEIQKSPKY---------ESGFALRFPRYVALREDKSPEEADTIERISELYGLQE 553          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METBU (DNA ligase OS=Methanococcoides burtonii (strain DSM 6242) GN=lig PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.259e-19
Identity = 58/172 (33.72%), Postives = 92/172 (53.49%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            +A+Y P KR  NWLK K      I ++LDLV IAA  G GKR  + G++ LAC+D  + +F  I K+ TGFS+  L E +      +I +             ++  +P  V+E+   ++  S          +   G +LRFPRL+ VREDK+PE+A + +++  +Y +Q+
Sbjct:  419 EASYSPGKRGKNWLKKKP-----IMETLDLVVIAAEWGYGKRANLIGSYALACFDPEDGKFLPIGKVATGFSDEQLAELTEVFSELIIGES----------GREIELKPDVVFEIAFEEIQKS---------TNYGSGYALRFPRLVNVREDKSPEEAETIDRIESIYLSQR 566          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_VACCA (DNA ligase OS=Vaccinia virus (strain Ankara) GN=LIG PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.644e-19
Identity = 59/168 (35.12%), Postives = 93/168 (55.36%), Query Frame = -2
Query:  327 DATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVI---PKPRPYYRFADTI-SPDVWFE---PTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQAS 803
            +  YEP KR   WLK+K+DY+   S+ DS DLV + A++G+G + G+   FL+ CYD  + +++++ K  +G  +  L E    L+   I   PK  P +   + I  PD   E    +++WE+  A+ T S  H A         GIS+RFPR  R+REDKT ++++
Sbjct:  385 NGVYEPGKR--RWLKIKRDYLNEGSMADSADLVVLGAYYGKGAKGGIMAVFLMGCYDDESGKWKTVTKC-SGHDDNTLRELQDQLKMIKINKDPKKIPEWLVVNKIYIPDFVVEDPKQSQIWEISGAEFTSSKSHTA--------NGISIRFPRFTRIREDKTWKEST 541          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_PYRHO (Probable thermostable DNA ligase OS=Pyrococcus horikoshii GN=lig PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19
Identity = 57/172 (33.14%), Postives = 90/172 (52.33%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            DA YEP  R   WLK+K        ++LDLV I A  G G+R  ++G+F+L  YD    EF  + K+G+GF++  L E +  L+  ++ +              V  +P  V EV   ++  SP +R+         G +LRFPR + +R+DK PE A + E++A++Y  Q+
Sbjct:  406 DAVYEPGNRGKKWLKIKPTM-----ENLDLVIIGAEWGEGRRAHLFGSFILGAYDPETGEFLEVGKVGSGFTDDDLVEFTKMLKPLIVKEE----------GKRVVIQPKIVIEVTYQEIQKSPKYRS---------GFALRFPRYVALRDDKGPEDADTIERIAQLYELQE 553          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METTP (DNA ligase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=lig PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.804e-19
Identity = 58/171 (33.92%), Postives = 90/171 (52.63%), Query Frame = -2
Query:  288 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 800
            +TY P KR  NWLK+K      + +SLDLV I A  G GKR  + G++ LAC D++  E + +  + TG ++ ML E +   R  ++ +             +V   P  V+EV   ++  SP +           G +LRFPRLI VR+DK+P +A + E++ E+Y  Q+
Sbjct:  401 STYTPGKRGKNWLKIKP-----LLESLDLVVIGARWGEGKRANLLGSYRLACIDTDTGELKDVGWVATGITDEMLAELTELFRELIVKEN----------GMEVEVHPEIVFEVGYEEIQRSPNY---------SSGYALRFPRLIAVRDDKSPSEADTLERIGEIYRLQR 547          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_VACCC (DNA ligase OS=Vaccinia virus (strain Copenhagen) GN=LIG PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.782e-19
Identity = 56/168 (33.33%), Postives = 96/168 (57.14%), Query Frame = -2
Query:  327 DATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPRPYYRFADTI-SPDVWFE---PTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQAS 803
            +  YEP KR   WLK+K+DY+   S+ DS DLV + A++G+G + G+   FL+ CYD  + +++++ K  +G  +    +L+++ + ++    PK  P +   + I  PD   E    +++WE+  A+ T S  H A         GIS+RFPR  R+REDKT ++++
Sbjct:  385 NGVYEPGKR--RWLKIKRDYLNEGSMADSADLVVLGAYYGKGAKGGIMAVFLMGCYDDESGKWKTVTKC-SGHDDNTLRVLQDQLTMIKINKDPKKIPEWLVVNKIYIPDFVVEDPKQSQIWEISGAEFTSSKSHTA--------NGISIRFPRFTRIREDKTWKEST 541          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_VARV (DNA ligase OS=Variola virus GN=LIG PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.246e-19
Identity = 56/168 (33.33%), Postives = 96/168 (57.14%), Query Frame = -2
Query:  327 DATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPRPYYRFADTI-SPDVWFE---PTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQAS 803
            +  YEP KR   WLK+K+DY+   S+ DS DLV + A++G+G + G+   FL+ CYD  + +++++ K  +G  +    +L+++ + ++    PK  P +   + I  PD   E    +++WE+  A+ T S  H A         GIS+RFPR  R+REDKT ++++
Sbjct:  385 NGVYEPGKR--RWLKIKRDYLNEGSMADSADLVVLGAYYGKGAKGGIMAVFLMGCYDDESGKWKTVTKC-SGHDDNTLRVLQDQLTMVKINKDPKKIPEWLVVNKIYIPDFVVEDPKQSQIWEISGAEFTSSKSHTA--------NGISIRFPRFTRIREDKTWKEST 541          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_VACCW (DNA ligase OS=Vaccinia virus (strain Western Reserve) GN=LIG PE=1 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.246e-19
Identity = 56/168 (33.33%), Postives = 96/168 (57.14%), Query Frame = -2
Query:  327 DATYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPRPYYRFADTI-SPDVWFE---PTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQAS 803
            +  YEP KR   WLK+K+DY+   S+ DS DLV + A++G+G + G+   FL+ CYD  + +++++ K  +G  +    +L+++ + ++    PK  P +   + I  PD   E    +++WE+  A+ T S  H A         GIS+RFPR  R+REDKT ++++
Sbjct:  385 NGVYEPGKR--RWLKIKRDYLNEGSMADSADLVVLGAYYGKGAKGGIMAVFLMGCYDDESGKWKTVTKC-SGHDDNTLRVLQDQLTMVKINKDPKKIPEWLVVNKIYIPDFVVEDPKQSQIWEISGAEFTSSKSHTA--------NGISIRFPRFTRIREDKTWKEST 541          
The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DNLI_PYRKO1.487e-2034.88DNA ligase OS=Pyrococcus kodakaraensis GN=lig PE=1... [more]
DNLI3_HUMAN1.942e-2034.43DNA ligase 3 OS=Homo sapiens GN=LIG3 PE=1 SV=2[more]
DNLI_THEFM3.312e-2033.72DNA ligase OS=Thermococcus fumicolans GN=lig PE=3 ... [more]
DNLI_METBU1.259e-1933.72DNA ligase OS=Methanococcoides burtonii (strain DS... [more]
DNLI_VACCA1.644e-1935.12DNA ligase OS=Vaccinia virus (strain Ankara) GN=LI... [more]
DNLI_PYRHO2.804e-1933.14Probable thermostable DNA ligase OS=Pyrococcus hor... [more]
DNLI_METTP2.804e-1933.92DNA ligase OS=Methanosaeta thermophila (strain DSM... [more]
DNLI_VACCC4.782e-1933.33DNA ligase OS=Vaccinia virus (strain Copenhagen) G... [more]
DNLI_VARV6.246e-1933.33DNA ligase OS=Variola virus GN=LIG PE=3 SV=1[more]
DNLI_VACCW6.246e-1933.33DNA ligase OS=Vaccinia virus (strain Western Reser... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTTGAGATACTCAAAATCCAATTAGGATTAAATTTA
GAATGAAAATTATGACTCCTATACAGTATATCCAGGACCTTTCACGTCCA
GTTGACCACTAATGATGATAGGAATCATACATAAGATTTTTGGTTCTAAA
ACAGTTCTGATCAGATACATGGATTTGTGCAACAACCCAGCTGAATTTTA
CAAGAAAAGATCTTCAAAAATGAATGCAGCTTGAGATCCAGGCCTTCAAT
CATCTTCATTGTCATCTTGATTGTTTGGATGATTGAGTTTTTGAGCAGTA
TACATCTCTGCCACCTGCTCAGATGATGAAGCCTGCTCTGGGGTCTTGTC
TTCTCGAACACGAATTAGGCGAGGAAACCGGAGAGAAATGCCCTTATCAG
GATCCACAACACCAATGGCAGCACGATGAACAGGGCTAATAGTCAAGTCC
GCAGCTTTCACCTCCCAAACCTCTGTTGGCTCGAACCATACATCTGGACT
GATAGTATCAGCAAACCGGTAGTACGGCCTTGGTTTGGGTATAACTTTAG
AACGGAGACTGGAAGAACGTTCTTCAAGCATCGCTTCAGAAAATCCAGTG
CCTATTTTACATATGCTTTGAAATTCTTCATTATTGCTGTCATAACATGC
CAACAGAAAGGCACCATAAACACCTGTACGTTTCCCACGGCCATGAAATG
CAGCAATGGGTACTAAATCCAGCGAGTCTCCAATACTCTCAATGTAATCT
TTCTTTAATTTTAGCCAGTTAAGCGATCGCTTTGAAGGCTCATATGTAGC
ATCTCGA
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