CX078278

Overview
NameCX078278
Unique NameCX078278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METB6 (DNA ligase OS=Methanoregula boonei (strain 6A8) GN=lig PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 8.158e-19
Identity = 59/168 (35.12%), Postives = 85/168 (50.60%), Query Frame = -2
Query:  291 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 794
            Y P +R  NW+K+K +      D+LDL  I A  G GKR  V+G+FL+AC D    +   + ++ TGFS+  L E    L+  VI +             +V FEP  V+EV  A+L +SP +         D G +LRFPR IR+R+DK   +  + E +   Y  Q
Sbjct:  400 YTPGQRGKNWIKIKPEV-----DTLDLAVIGAEWGEGKRAHVFGSFLVACQDQG--KLIPLSRVATGFSDEQLTEVYDLLKDAVISR----------TGKEVRFEPELVFEVGYAELQVSPTY---------DAGFALRFPRFIRIRDDKDTTEIETLESIRGRYQRQ 541          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METPE (DNA ligase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=lig PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-18
Identity = 57/169 (33.73%), Postives = 89/169 (52.66%), Query Frame = -2
Query:  288 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 794
            Y P  R  +W+K+K +      ++LDLV I A  G G+R   +G+FLLAC D     F+++ K+ TG S+  L+E  +  + +VI +              V FEPT ++EV  A++  SP +         + G +LRFPR ++VR+DK  E+  + E +   Y AQK
Sbjct:  403 YSPGVRGKHWVKIKPEV-----ETLDLVVIGAEWGEGRRARTFGSFLLACLDQG--VFRAVSKVATGISDEQLQELYTLFKDQVIAES----------GNTVTFEPTVIFEVGYAEIQKSPSY---------ESGYALRFPRFVQVRDDKAVEEIETLESLTTRYLAQK 545          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METKA (DNA ligase OS=Methanopyrus kandleri GN=lig PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.049e-18
Identity = 56/168 (33.33%), Postives = 84/168 (50.00%), Query Frame = -2
Query:  300 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMY 803
            DA Y P  R    LK+K      + ++LD V I    G+GKR G+ G++LLA +D N E    + K+GTG  +  LE  +      ++          +    +V F+P  V+EV+  D+  SP +           G +LRFPRL+RVR+D  PE A + E+V  +Y
Sbjct:  409 DANYTPGVRGKKMLKVKP-----VLETLDCVVIGGIWGKGKRKGLIGSYLLAVWDENKENLLEVGKVGTGMDDETLERLTKMFEDLIV----------EESGREVRFKPEVVFEVEFEDIQKSPKY---------SSGFALRFPRLVRVRDDLGPEDADTIEKVRRIY 552          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI3_MOUSE (DNA ligase 3 OS=Mus musculus GN=Lig3 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 62/184 (33.70%), Postives = 94/184 (51.09%), Query Frame = -2
Query:  288 TYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFH-GRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP-----------RPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 797
            TYEP KR  +WLK+KKDY+   ++ D+ DLV +  F  G+G + G+   FL+ CYD +++++ ++ K   G  +A L      L    I K            + YY   D I PD   +   VWE+  A+ + S  H A         GIS+RFPR  R+R+DK  + A++  Q+ E+Y   K
Sbjct:  669 TYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGVFLIGQGSKGGMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELVMVKISKDPSKIPSWLKINKIYY--PDFIVPDP--KKAAVWEITGAEFSRSEAHTA--------DGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSK 838          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI2_METMA (DNA ligase 2 OS=Methanosarcina mazei GN=lig2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.019e-18
Identity = 56/171 (32.75%), Postives = 89/171 (52.05%), Query Frame = -2
Query:  291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803
            ++ Y P KR  NWLK K      + D+LDLV + A  G G+R  + G++ +ACYD +   F  + K+GTG ++  L+E +  L S ++        FA          P  V E+   ++  SP +         D G +LRFPR IR+R+DK PE+A + +++  +Y+ Q
Sbjct:  417 NSVYSPGKRGKNWLKKKP-----LMDTLDLVIVGAEWGFGRRANLIGSYTVACYDPDTTRFLQVGKVGTGLTDDQLKELTEIL-SGLMEGGEAGGVFA--------IRPKVVLEIAFEEIQKSPNY---------DSGFALRFPRFIRIRDDKDPEEADTIQRIGRVYSQQ 564          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI2_METAC (DNA ligase 2 OS=Methanosarcina acetivorans GN=lig2 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.178e-17
Identity = 55/171 (32.16%), Postives = 88/171 (51.46%), Query Frame = -2
Query:  291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803
            ++ Y P KR  NWLK K      + ++LDLV + A  G G+R  + G++ +ACYD     F  + K+GTG ++  L+E +  L S ++        FA          P  V E+   ++  SP +         D G +LRFPR IR+R+DK PE+A + +++  +Y+ Q
Sbjct:  417 NSAYSPGKRGKNWLKKKP-----LMETLDLVVVGAEWGYGRRANLIGSYSVACYDPETSRFLQVGKVGTGLTDEQLKELTEML-SGLMEGGEAGGVFA--------IRPKVVLEIAFEEIQKSPNY---------DSGFALRFPRFIRIRDDKDPEEADTIQRIGRVYSQQ 564          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI3_DICDI (DNA ligase 3 OS=Dictyostelium discoideum GN=lig3 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.624e-17
Identity = 56/190 (29.47%), Postives = 102/190 (53.68%), Query Frame = -2
Query:  258 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPR--PYY-----RFA-DTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDN 794
            YEP  R  +W+K+KKDYI  + DS DL+ +  ++G G   G+   FL+ CYD  N+ ++++ K   G  +   A L+ + +S  +K+  +    PY+     ++A D I  D+  +   ++E+++A+ T S  H           G S+RFPR++++R DK  + A++ E++ E+    K+      D+N
Sbjct:  443 YEPGCR--HWIKIKKDYIHGMADSADLIAVGGYYGSGSMGGLVTVFLMVCYDKQNKIYKTVVKASGGLDDNMIAKLQPKVTSTMTKISKEVSKIPYWLDCPKQYAPDFIVKDI--KQAMIFEIESAEFTKSDHHTT---------GYSMRFPRILKIRHDKDYKTATTLEELVEIGKDIKIVPVGKGDNN 619          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI2_METBF (DNA ligase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=lig2 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2
Query:  291 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 794
            Y P KR  NWLK K      + ++LDLV + A  G G+R  + G++ +ACYD     F  + K+GTG ++  L+E +  L S ++        FA          P  V E+   ++  SP +         D G +LRFPR IR+R+DK PE+A + +++ ++Y+ Q
Sbjct:  420 YSPGKRGKNWLKKKP-----LMETLDLVVVGAEWGFGRRANLLGSYTVACYDPKTLRFLQVGKVGTGLTDDQLKELTEIL-SGLMEGGEAGGIFA--------IRPKIVLEIAFEEIQKSPNY---------DSGFALRFPRFIRIRDDKDPEEADTIQRIGKVYSQQ 564          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METLZ (DNA ligase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=lig PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16
Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = -2
Query:  291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803
            D+ Y P  R   W+K+K +      D++DLV  AA  G GKR  ++G+FLLAC D N +  + I ++ TG  ++ML       + K+I +              V FEP  V+EV  A+L  S  + A         G +LRFPR +R+R+DK   +  + E +   Y+ Q
Sbjct:  397 DSPYLPGNRGKLWIKIKPEV-----DTIDLVVTAAEWGEGKRAKMFGSFLLACQDENGDLLE-ISRVATGIDDSMLSTLYDLFKDKIIAEK----------GKTVTFEPDVVFEVGYAELQKSTNYEA---------GYALRFPRFVRLRDDKDVSEIETLESLTRRYSLQ 542          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_HALSA (DNA ligase OS=Halobacterium salinarium GN=lig PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16
Identity = 59/171 (34.50%), Postives = 83/171 (48.54%), Query Frame = -2
Query:  288 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 800
            A Y P  R  +WLK K D      ++LDLV   A  G G+R  V G FLL+  D+  + F++I K+ TG ++  L   S  L         P+ R  D  + D+  EP  V EV   ++  SP +           G +LRFPR + VREDKTP  A + E+V  +   Q+
Sbjct:  414 APYTPGDRGKDWLKRKPDV-----ETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTDEELAALSDRL--------EPHVRSEDGQTVDI--EPAVVLEVGYEEIQASPTY---------SSGYALRFPRFVSVREDKTPTTADTIERVERLAAQQQ 560          
The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DNLI_METB68.158e-1935.12DNA ligase OS=Methanoregula boonei (strain 6A8) GN... [more]
DNLI_METPE1.391e-1833.73DNA ligase OS=Methanosphaerula palustris (strain A... [more]
DNLI_METKA4.049e-1833.33DNA ligase OS=Methanopyrus kandleri GN=lig PE=3 SV... [more]
DNLI3_MOUSE6.906e-1833.70DNA ligase 3 OS=Mus musculus GN=Lig3 PE=1 SV=1[more]
DNLI2_METMA9.019e-1832.75DNA ligase 2 OS=Methanosarcina mazei GN=lig2 PE=3 ... [more]
DNLI2_METAC1.178e-1732.16DNA ligase 2 OS=Methanosarcina acetivorans GN=lig2... [more]
DNLI3_DICDI2.624e-1729.47DNA ligase 3 OS=Dictyostelium discoideum GN=lig3 P... [more]
DNLI2_METBF7.635e-1732.74DNA ligase 2 OS=Methanosarcina barkeri (strain Fus... [more]
DNLI_METLZ1.302e-1632.75DNA ligase OS=Methanocorpusculum labreanum (strain... [more]
DNLI_HALSA1.302e-1634.50DNA ligase OS=Halobacterium salinarium GN=lig PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTTGAGATACTCAAAATCCAATTAGGATTAAATTTA
GAATGAAAATTATGACTCCTATACAGTATATCCAGGACCTTTCACGTCCA
GTTGACCACTAATGATGATAGGAATCATACATAAGATTTTTGGTTCTAAA
ACAGTTCTGATCAGATACATGGATTTGTGCAACAACCCAGCTGAATTTTA
CAAGAAAAGATCTTCAAAAATGAATGCAGCTTGAGATCCAGGCCTTCAAT
CATCTTCATTGTCATCTTGATTGTTTGGATGATTGAGTTTTTGAGCAGTA
TACATCTCTGCCACCTGCTCAGATGATGAAGCCTGCTCTGGGGTCTTGTC
TTCTCGAACACGAATTAGGCGAGGAAACCGGAGAGAAATGCCCTTATCAG
GATCCACAACACCAATGGCAGCACGATGAACAGGGCTAATAGTCAAGTCC
GCAGCTTTCACCTCCCAAACCTCTGTTGGCTCGAACCATACATCTGGACT
GATAGTATCAGCAAACCGGTAGTACGGCCTTGGTTTGGGTATAACTTTAG
AACGGAGACTGGAAGAACGTTCTTCAAGCATCGCTTCAGAAAATCCAGTG
CCTATTTTACATATGCTTTGAAATTCTTCATTATTGCTGTCATAACATGC
CAACAGAAAGGCACCATAAACACCTGTACGTTTCCCACGGCCATGAAATG
CAGCAATGGGTACTAAATCCAGCGAGTCTCCAATACTCTCAATGTAATCT
TTCTTTAATTTTAGCCAGTTAAGCGATCGCTTTGAAGGCTCATATGTAGC
ATCTCGA
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