CX078278
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METB6 (DNA ligase OS=Methanoregula boonei (strain 6A8) GN=lig PE=3 SV=1) HSP 1 Score: 94.3597 bits (233), Expect = 8.158e-19 Identity = 59/168 (35.12%), Postives = 85/168 (50.60%), Query Frame = -2 Query: 291 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 794 Y P +R NW+K+K + D+LDL I A G GKR V+G+FL+AC D + + ++ TGFS+ L E L+ VI + +V FEP V+EV A+L +SP + D G +LRFPR IR+R+DK + + E + Y Q Sbjct: 400 YTPGQRGKNWIKIKPEV-----DTLDLAVIGAEWGEGKRAHVFGSFLVACQDQG--KLIPLSRVATGFSDEQLTEVYDLLKDAVISR----------TGKEVRFEPELVFEVGYAELQVSPTY---------DAGFALRFPRFIRIRDDKDTTEIETLESIRGRYQRQ 541
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METPE (DNA ligase OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=lig PE=3 SV=1) HSP 1 Score: 93.5893 bits (231), Expect = 1.391e-18 Identity = 57/169 (33.73%), Postives = 89/169 (52.66%), Query Frame = -2 Query: 288 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 794 Y P R +W+K+K + ++LDLV I A G G+R +G+FLLAC D F+++ K+ TG S+ L+E + + +VI + V FEPT ++EV A++ SP + + G +LRFPR ++VR+DK E+ + E + Y AQK Sbjct: 403 YSPGVRGKHWVKIKPEV-----ETLDLVVIGAEWGEGRRARTFGSFLLACLDQG--VFRAVSKVATGISDEQLQELYTLFKDQVIAES----------GNTVTFEPTVIFEVGYAEIQKSPSY---------ESGYALRFPRFVQVRDDKAVEEIETLESLTTRYLAQK 545
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METKA (DNA ligase OS=Methanopyrus kandleri GN=lig PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 4.049e-18 Identity = 56/168 (33.33%), Postives = 84/168 (50.00%), Query Frame = -2 Query: 300 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMY 803 DA Y P R LK+K + ++LD V I G+GKR G+ G++LLA +D N E + K+GTG + LE + ++ + +V F+P V+EV+ D+ SP + G +LRFPRL+RVR+D PE A + E+V +Y Sbjct: 409 DANYTPGVRGKKMLKVKP-----VLETLDCVVIGGIWGKGKRKGLIGSYLLAVWDENKENLLEVGKVGTGMDDETLERLTKMFEDLIV----------EESGREVRFKPEVVFEVEFEDIQKSPKY---------SSGFALRFPRLVRVRDDLGPEDADTIEKVRRIY 552
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI3_MOUSE (DNA ligase 3 OS=Mus musculus GN=Lig3 PE=1 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18 Identity = 62/184 (33.70%), Postives = 94/184 (51.09%), Query Frame = -2 Query: 288 TYEPSKRSLNWLKLKKDYIE--SIGDSLDLVPIAAFH-GRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKP-----------RPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 797 TYEP KR +WLK+KKDY+ ++ D+ DLV + F G+G + G+ FL+ CYD +++++ ++ K G +A L L I K + YY D I PD + VWE+ A+ + S H A GIS+RFPR R+R+DK + A++ Q+ E+Y K Sbjct: 669 TYEPGKR--HWLKVKKDYLNEGAMADTADLVVLGVFLIGQGSKGGMMSIFLMGCYDPDSQKWCTVTKCAGGHDDATLARLQKELVMVKISKDPSKIPSWLKINKIYY--PDFIVPDP--KKAAVWEITGAEFSRSEAHTA--------DGISIRFPRCTRIRDDKDWKSATNLPQLKELYQLSK 838
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI2_METMA (DNA ligase 2 OS=Methanosarcina mazei GN=lig2 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.019e-18 Identity = 56/171 (32.75%), Postives = 89/171 (52.05%), Query Frame = -2 Query: 291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803 ++ Y P KR NWLK K + D+LDLV + A G G+R + G++ +ACYD + F + K+GTG ++ L+E + L S ++ FA P V E+ ++ SP + D G +LRFPR IR+R+DK PE+A + +++ +Y+ Q Sbjct: 417 NSVYSPGKRGKNWLKKKP-----LMDTLDLVIVGAEWGFGRRANLIGSYTVACYDPDTTRFLQVGKVGTGLTDDQLKELTEIL-SGLMEGGEAGGVFA--------IRPKVVLEIAFEEIQKSPNY---------DSGFALRFPRFIRIRDDKDPEEADTIQRIGRVYSQQ 564
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI2_METAC (DNA ligase 2 OS=Methanosarcina acetivorans GN=lig2 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 1.178e-17 Identity = 55/171 (32.16%), Postives = 88/171 (51.46%), Query Frame = -2 Query: 291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803 ++ Y P KR NWLK K + ++LDLV + A G G+R + G++ +ACYD F + K+GTG ++ L+E + L S ++ FA P V E+ ++ SP + D G +LRFPR IR+R+DK PE+A + +++ +Y+ Q Sbjct: 417 NSAYSPGKRGKNWLKKKP-----LMETLDLVVVGAEWGYGRRANLIGSYSVACYDPETSRFLQVGKVGTGLTDEQLKELTEML-SGLMEGGEAGGVFA--------IRPKVVLEIAFEEIQKSPNY---------DSGFALRFPRFIRIRDDKDPEEADTIQRIGRVYSQQ 564
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI3_DICDI (DNA ligase 3 OS=Dictyostelium discoideum GN=lig3 PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 2.624e-17 Identity = 56/190 (29.47%), Postives = 102/190 (53.68%), Query Frame = -2 Query: 258 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPR--PYY-----RFA-DTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDN 794 YEP R +W+K+KKDYI + DS DL+ + ++G G G+ FL+ CYD N+ ++++ K G + A L+ + +S +K+ + PY+ ++A D I D+ + ++E+++A+ T S H G S+RFPR++++R DK + A++ E++ E+ K+ D+N Sbjct: 443 YEPGCR--HWIKIKKDYIHGMADSADLIAVGGYYGSGSMGGLVTVFLMVCYDKQNKIYKTVVKASGGLDDNMIAKLQPKVTSTMTKISKEVSKIPYWLDCPKQYAPDFIVKDI--KQAMIFEIESAEFTKSDHHTT---------GYSMRFPRILKIRHDKDYKTATTLEELVEIGKDIKIVPVGKGDNN 619
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI2_METBF (DNA ligase 2 OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=lig2 PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17 Identity = 55/168 (32.74%), Postives = 87/168 (51.79%), Query Frame = -2 Query: 291 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 794 Y P KR NWLK K + ++LDLV + A G G+R + G++ +ACYD F + K+GTG ++ L+E + L S ++ FA P V E+ ++ SP + D G +LRFPR IR+R+DK PE+A + +++ ++Y+ Q Sbjct: 420 YSPGKRGKNWLKKKP-----LMETLDLVVVGAEWGFGRRANLLGSYTVACYDPKTLRFLQVGKVGTGLTDDQLKELTEIL-SGLMEGGEAGGIFA--------IRPKIVLEIAFEEIQKSPNY---------DSGFALRFPRFIRIRDDKDPEEADTIQRIGKVYSQQ 564
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METLZ (DNA ligase OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=lig PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16 Identity = 56/171 (32.75%), Postives = 85/171 (49.71%), Query Frame = -2 Query: 291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803 D+ Y P R W+K+K + D++DLV AA G GKR ++G+FLLAC D N + + I ++ TG ++ML + K+I + V FEP V+EV A+L S + A G +LRFPR +R+R+DK + + E + Y+ Q Sbjct: 397 DSPYLPGNRGKLWIKIKPEV-----DTIDLVVTAAEWGEGKRAKMFGSFLLACQDENGDLLE-ISRVATGIDDSMLSTLYDLFKDKIIAEK----------GKTVTFEPDVVFEVGYAELQKSTNYEA---------GYALRFPRFVRLRDDKDVSEIETLESLTRRYSLQ 542
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_HALSA (DNA ligase OS=Halobacterium salinarium GN=lig PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16 Identity = 59/171 (34.50%), Postives = 83/171 (48.54%), Query Frame = -2 Query: 288 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 800 A Y P R +WLK K D ++LDLV A G G+R V G FLL+ D+ + F++I K+ TG ++ L S L P+ R D + D+ EP V EV ++ SP + G +LRFPR + VREDKTP A + E+V + Q+ Sbjct: 414 APYTPGDRGKDWLKRKPDV-----ETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTDEELAALSDRL--------EPHVRSEDGQTVDI--EPAVVLEVGYEEIQASPTY---------SSGYALRFPRFVSVREDKTPTTADTIERVERLAAQQQ 560 The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bpback to top |