CX078278
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_HALS3 (DNA ligase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=lig PE=3 SV=1) HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16 Identity = 59/171 (34.50%), Postives = 83/171 (48.54%), Query Frame = -2 Query: 288 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 800 A Y P R +WLK K D ++LDLV A G G+R V G FLL+ D+ + F++I K+ TG ++ L S L P+ R D + D+ EP V EV ++ SP + G +LRFPR + VREDKTP A + E+V + Q+ Sbjct: 414 APYTPGDRGKDWLKRKPDV-----ETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTDEELAALSDRL--------EPHVRSEDGQTVDI--EPAVVLEVGYEEIQASPTY---------SSGYALRFPRFVSVREDKTPTTADTIERVERLAAQQQ 560
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METMJ (DNA ligase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=lig PE=3 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-15 Identity = 53/172 (30.81%), Postives = 87/172 (50.58%), Query Frame = -2 Query: 288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803 D+ Y P R W+K+K ++LDLV + A G G+R G +G+FLLA D + K+ TG ++ +L E + + +VI + +V EP V+EV +++ SP + + G +LRFPR +RVREDK+ ++ + + +AE Y Q+ Sbjct: 397 DSPYTPGVRGRLWVKVKPGV-----ETLDLVVVGAEWGEGRRAGTFGSFLLAVQDQGR--LLPVGKVATGITDEVLAELYALFKDRVIARS----------GKEVTLEPEVVFEVGYSEIQTSPNY---------ESGYALRFPRFVRVREDKSVDETETLDSLAERYGRQR 542
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_ARCFU (DNA ligase OS=Archaeoglobus fulgidus GN=lig PE=1 SV=2) HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-15 Identity = 54/168 (32.14%), Postives = 84/168 (50.00%), Query Frame = -2 Query: 291 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 794 Y P KR NWLK+K +I ++LDLV + G GKR+ +F LAC D + + ++ TGF+E LEE + R ++ + V F P V+EV ++ SP + + G +LRFPR +R+R+DK ++A + E+V +Y Q Sbjct: 406 YIPGKRGKNWLKVK-----AIMETLDLVVVGGEWGEGKRSHWLSSFELACLDPVTGKLLKVGRVATGFTEEDLEELTEMFRPLIVSQQ----------GKKVEFIPKYVFEVAYQEIQKSPKY---------ESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQ 549
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_DICDI (DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1) HSP 1 Score: 83.5741 bits (205), Expect = 1.440e-15 Identity = 57/211 (27.01%), Postives = 103/211 (48.82%), Query Frame = -2 Query: 249 YEPSKRSLNWLKLKKDYIESIG---DSLDLVPIAAFHGRG--KRTGVYGAFLLAC---YDSNNEE------------FQSICKIGTGFSEAMLEERSSSL----RSKVIPKPRPYYRFADTIS--PDVWFEP---TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD 794 Y P++R W+K+K +YI+ +G D LDLV I ++G G +R G F+L DS + + F S CK+G+G+++ L+ L + KP + A+ PDVW +P ++V ++KA+ + ++ ++ G +LRFPR++++R+DK + S E++ +++T N +D D Sbjct: 585 YVPAERKDKWVKIKPEYIDGMGNGADDLDLVIIGGYYGSGLNRRGGTISHFMLGVPFIADSTDTDIDDESTFDKNVIFYSFCKVGSGYTDIQLKSLQKDLDPHWNNFSTSKPPSIIQLAEPFKEKPDVWIDPRVYSKVLQIKASQIVVTDKYKC---------GYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNLNFKRDHEYGD 786
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METHJ (DNA ligase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=lig PE=3 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 1.881e-15 Identity = 56/165 (33.94%), Postives = 85/165 (51.52%), Query Frame = -2 Query: 300 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMY 794 Y P R +W+K+K + D+LDLV A G GKR V+G+FLL+ D ++ I ++ TGFS+ L +L+ +I K V+FEP V+E+ +++ SP + G +LRFPR I VREDK ++A+++E V E Y Sbjct: 400 YTPGVRGKDWVKIKPE-----ADTLDLVVTGAEWGEGKRAHVFGSFLLSVRD--DDRLVPISRVATGFSDEQLIWLFDTLQDDIIRKDGKM----------VYFEPRLVFEIGYSEIQKSPNYEG---------GYALRFPRFIEVREDKDLKEANTAEDVEERY 538
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_CHICK (DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2) HSP 1 Score: 83.1889 bits (204), Expect = 1.881e-15 Identity = 51/162 (31.48%), Postives = 87/162 (53.70%), Query Frame = -2 Query: 345 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYD--SNNEE---FQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDK 800 +TY+P KR WLK+K +Y+ + D LDL+ + + G+G R G+ FL A + + NE+ F SIC++G+G++ L + L P K P T P+++ EP + + ++KAA++ S +++ +LRFPR+ ++REDK Sbjct: 441 STYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSRGGMMSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPPCNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKT---------DCTLRFPRIEKIREDK 593
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_YARLI (DNA ligase 4 OS=Yarrowia lipolytica GN=LIG4 PE=3 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 2.456e-15 Identity = 56/197 (28.43%), Postives = 94/197 (47.72%), Query Frame = -2 Query: 252 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYR------------FADTISPDVWFEPTE--VWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNED 800 + Y + R +WLK+K +Y+ G+ LD+V I ++G GKR + ++L +++F S K+G G + + ++R+K K + + + D PDVW EP++ V EVKAA + S ++ G+ LRFPR +R DKT E + Q AE+ ++ N + + ED Sbjct: 485 SVYRVNTRDDSWLKMKPEYMSEFGEKLDVVIIGGYYGSGKRGSILSSYLCGLRADGSDQFWSFFKVGGGLTAGDYQ----AIRTKTEGKWKRWDKNDKPKNVLLAGPNGDLERPDVWIEPSDSVVVEVKAASVVASDQYKV---------GLCLRFPRFRALRLDKTWEDGLTISQFAELRQTVEMEAENKELELED 668
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_NATPD (DNA ligase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=lig PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14 Identity = 54/164 (32.93%), Postives = 82/164 (50.00%), Query Frame = -2 Query: 312 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQV 803 D+TY P R NWLK K D ++LDLV A G G+R + G F+++ ++ ++ + K+ TG ++ LE L+ P+ R D DV EP V+EV ++ SP + + G +LRFPR + VREDK+P A S E++ Sbjct: 406 DSTYTPGSRGKNWLKRKPDV-----ETLDLVVTGAEWGEGRRANLLGTFVVSA--RADDGYEPVGKVATGITDEELERLHERLQ--------PHVRTED--GTDVDIEPAVVFEVGYEEIQQSPTYGS---------GYALRFPRFVGVREDKSPSDADSLERI 543
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_MOUSE (DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14 Identity = 46/160 (28.75%), Postives = 83/160 (51.88%), Query Frame = -2 Query: 345 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS-----NNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDK 794 Y+P KR WLK+K +Y+ + D LD++ + + G+G R G+ FL A ++ F ++C++G+G++ L + L P K P T P+V+ EP + + ++KAA++ S +++ G +LRFPR+ ++R+DK Sbjct: 438 YKPDKRGEGWLKIKPEYVSGLMDELDVLIVGGYWGKGSRGGMMSHFLCAVAETPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFHKKSPPSSILCGTEKPEVYIEPQNSVIVQIKAAEIVPSDMYKT---------GSTLRFPRIEKIRDDK 588
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_EMENI (DNA ligase 4 OS=Emericella nidulans GN=lig4 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14 Identity = 55/193 (28.50%), Postives = 95/193 (49.22%), Query Frame = -2 Query: 252 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLL--------ACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVI---PKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDK-GISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNED 794 Y ++R +W+K+K +Y+ G+SLDLV I ++G G R G +FL + SN + S CK+G GF+ A K + PK +P + + D +E ++W +K D + V A++ V D + G++LRFPR R+R DK + A S ++ ++ + + H + + E+ Sbjct: 495 YRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYGSGHRGGKLSSFLCGLRVDEGQSSQGSNPTKCYSFCKVGGGFTAADYANIRHHTDGKWVEWNPK-KPPTTYIELAGGDSQYERPDMW-IKPEDSVVICVKAASVSVSDQFRIGLTLRFPRFKRLRMDKDWKSALSVQEFLDLKSHAEQEHREKEFNVEN 685 The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bpback to top |