CX078278

Overview
NameCX078278
Unique NameCX078278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_HALS3 (DNA ligase OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=lig PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.302e-16
Identity = 59/171 (34.50%), Postives = 83/171 (48.54%), Query Frame = -2
Query:  288 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 800
            A Y P  R  +WLK K D      ++LDLV   A  G G+R  V G FLL+  D+  + F++I K+ TG ++  L   S  L         P+ R  D  + D+  EP  V EV   ++  SP +           G +LRFPR + VREDKTP  A + E+V  +   Q+
Sbjct:  414 APYTPGDRGKDWLKRKPDV-----ETLDLVVTGAEWGEGRRASVLGTFLLSARDAAGDGFETIGKVATGLTDEELAALSDRL--------EPHVRSEDGQTVDI--EPAVVLEVGYEEIQASPTY---------SSGYALRFPRFVSVREDKTPTTADTIERVERLAAQQQ 560          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METMJ (DNA ligase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=lig PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-15
Identity = 53/172 (30.81%), Postives = 87/172 (50.58%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            D+ Y P  R   W+K+K        ++LDLV + A  G G+R G +G+FLLA  D        + K+ TG ++ +L E  +  + +VI +             +V  EP  V+EV  +++  SP +         + G +LRFPR +RVREDK+ ++  + + +AE Y  Q+
Sbjct:  397 DSPYTPGVRGRLWVKVKPGV-----ETLDLVVVGAEWGEGRRAGTFGSFLLAVQDQGR--LLPVGKVATGITDEVLAELYALFKDRVIARS----------GKEVTLEPEVVFEVGYSEIQTSPNY---------ESGYALRFPRFVRVREDKSVDETETLDSLAERYGRQR 542          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_ARCFU (DNA ligase OS=Archaeoglobus fulgidus GN=lig PE=1 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.103e-15
Identity = 54/168 (32.14%), Postives = 84/168 (50.00%), Query Frame = -2
Query:  291 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 794
            Y P KR  NWLK+K     +I ++LDLV +    G GKR+    +F LAC D    +   + ++ TGF+E  LEE +   R  ++ +              V F P  V+EV   ++  SP +         + G +LRFPR +R+R+DK  ++A + E+V  +Y  Q
Sbjct:  406 YIPGKRGKNWLKVK-----AIMETLDLVVVGGEWGEGKRSHWLSSFELACLDPVTGKLLKVGRVATGFTEEDLEELTEMFRPLIVSQQ----------GKKVEFIPKYVFEVAYQEIQKSPKY---------ESGYALRFPRFVRLRDDKDVDEADTIERVENLYKLQ 549          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_DICDI (DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.440e-15
Identity = 57/211 (27.01%), Postives = 103/211 (48.82%), Query Frame = -2
Query:  249 YEPSKRSLNWLKLKKDYIESIG---DSLDLVPIAAFHGRG--KRTGVYGAFLLAC---YDSNNEE------------FQSICKIGTGFSEAMLEERSSSL----RSKVIPKPRPYYRFADTIS--PDVWFEP---TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNEDD 794
            Y P++R   W+K+K +YI+ +G   D LDLV I  ++G G  +R G    F+L      DS + +            F S CK+G+G+++  L+     L     +    KP    + A+     PDVW +P   ++V ++KA+ + ++  ++          G +LRFPR++++R+DK  +   S E++ +++T    N    +D    D
Sbjct:  585 YVPAERKDKWVKIKPEYIDGMGNGADDLDLVIIGGYYGSGLNRRGGTISHFMLGVPFIADSTDTDIDDESTFDKNVIFYSFCKVGSGYTDIQLKSLQKDLDPHWNNFSTSKPPSIIQLAEPFKEKPDVWIDPRVYSKVLQIKASQIVVTDKYKC---------GYTLRFPRVLKIRDDKGWKDCCSHEEIIDLFTNYSTNLNFKRDHEYGD 786          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_METHJ (DNA ligase OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=lig PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.881e-15
Identity = 56/165 (33.94%), Postives = 85/165 (51.52%), Query Frame = -2
Query:  300 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMY 794
            Y P  R  +W+K+K +      D+LDLV   A  G GKR  V+G+FLL+  D  ++    I ++ TGFS+  L     +L+  +I K              V+FEP  V+E+  +++  SP +           G +LRFPR I VREDK  ++A+++E V E Y
Sbjct:  400 YTPGVRGKDWVKIKPE-----ADTLDLVVTGAEWGEGKRAHVFGSFLLSVRD--DDRLVPISRVATGFSDEQLIWLFDTLQDDIIRKDGKM----------VYFEPRLVFEIGYSEIQKSPNYEG---------GYALRFPRFIEVREDKDLKEANTAEDVEERY 538          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_CHICK (DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 1.881e-15
Identity = 51/162 (31.48%), Postives = 87/162 (53.70%), Query Frame = -2
Query:  345 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYD--SNNEE---FQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDK 800
            +TY+P KR   WLK+K +Y+  + D LDL+ +  + G+G R G+   FL A  +  + NE+   F SIC++G+G++   L +    L     P   K  P      T  P+++ EP  + + ++KAA++  S +++            +LRFPR+ ++REDK
Sbjct:  441 STYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGSRGGMMSHFLCAVAETPAPNEKPTVFHSICRVGSGYTMKELYDLGLKLAKHWKPYNRKDPPCNILCGTEKPEMYIEPCNSVIVQIKAAEIVNSDMYKT---------DCTLRFPRIEKIREDK 593          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_YARLI (DNA ligase 4 OS=Yarrowia lipolytica GN=LIG4 PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.456e-15
Identity = 56/197 (28.43%), Postives = 94/197 (47.72%), Query Frame = -2
Query:  252 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYR------------FADTISPDVWFEPTE--VWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNED 800
            + Y  + R  +WLK+K +Y+   G+ LD+V I  ++G GKR  +  ++L       +++F S  K+G G +    +    ++R+K   K + + +              D   PDVW EP++  V EVKAA +  S  ++          G+ LRFPR   +R DKT E   +  Q AE+    ++   N + + ED
Sbjct:  485 SVYRVNTRDDSWLKMKPEYMSEFGEKLDVVIIGGYYGSGKRGSILSSYLCGLRADGSDQFWSFFKVGGGLTAGDYQ----AIRTKTEGKWKRWDKNDKPKNVLLAGPNGDLERPDVWIEPSDSVVVEVKAASVVASDQYKV---------GLCLRFPRFRALRLDKTWEDGLTISQFAELRQTVEMEAENKELELED 668          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_NATPD (DNA ligase OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=lig PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 54/164 (32.93%), Postives = 82/164 (50.00%), Query Frame = -2
Query:  312 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQV 803
            D+TY P  R  NWLK K D      ++LDLV   A  G G+R  + G F+++     ++ ++ + K+ TG ++  LE     L+        P+ R  D    DV  EP  V+EV   ++  SP + +         G +LRFPR + VREDK+P  A S E++
Sbjct:  406 DSTYTPGSRGKNWLKRKPDV-----ETLDLVVTGAEWGEGRRANLLGTFVVSA--RADDGYEPVGKVATGITDEELERLHERLQ--------PHVRTED--GTDVDIEPAVVFEVGYEEIQQSPTYGS---------GYALRFPRFVGVREDKSPSDADSLERI 543          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_MOUSE (DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.632e-14
Identity = 46/160 (28.75%), Postives = 83/160 (51.88%), Query Frame = -2
Query:  345 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDS-----NNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDK 794
            Y+P KR   WLK+K +Y+  + D LD++ +  + G+G R G+   FL A  ++         F ++C++G+G++   L +    L     P   K  P      T  P+V+ EP  + + ++KAA++  S +++          G +LRFPR+ ++R+DK
Sbjct:  438 YKPDKRGEGWLKIKPEYVSGLMDELDVLIVGGYWGKGSRGGMMSHFLCAVAETPPPGDRPSVFHTLCRVGSGYTMKELYDLGLKLAKYWKPFHKKSPPSSILCGTEKPEVYIEPQNSVIVQIKAAEIVPSDMYKT---------GSTLRFPRIEKIRDDK 588          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_EMENI (DNA ligase 4 OS=Emericella nidulans GN=lig4 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14
Identity = 55/193 (28.50%), Postives = 95/193 (49.22%), Query Frame = -2
Query:  252 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLL--------ACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVI---PKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDK-GISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNHPNNQDDNED 794
            Y  ++R  +W+K+K +Y+   G+SLDLV I  ++G G R G   +FL         +   SN  +  S CK+G GF+ A           K +   PK +P   + +    D  +E  ++W +K  D  +  V  A++ V D  + G++LRFPR  R+R DK  + A S ++  ++ +  +  H   + + E+
Sbjct:  495 YRLNERHDDWMKVKPEYMTEFGESLDLVVIGGYYGSGHRGGKLSSFLCGLRVDEGQSSQGSNPTKCYSFCKVGGGFTAADYANIRHHTDGKWVEWNPK-KPPTTYIELAGGDSQYERPDMW-IKPEDSVVICVKAASVSVSDQFRIGLTLRFPRFKRLRMDKDWKSALSVQEFLDLKSHAEQEHREKEFNVEN 685          
The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DNLI_HALS31.302e-1634.50DNA ligase OS=Halobacterium salinarum (strain ATCC... [more]
DNLI_METMJ1.103e-1530.81DNA ligase OS=Methanoculleus marisnigri (strain AT... [more]
DNLI_ARCFU1.103e-1532.14DNA ligase OS=Archaeoglobus fulgidus GN=lig PE=1 S... [more]
DNLI4_DICDI1.440e-1527.01DNA ligase 4 OS=Dictyostelium discoideum GN=lig4 P... [more]
DNLI_METHJ1.881e-1533.94DNA ligase OS=Methanospirillum hungatei (strain JF... [more]
DNLI4_CHICK1.881e-1531.48DNA ligase 4 OS=Gallus gallus GN=LIG4 PE=2 SV=2[more]
DNLI4_YARLI2.456e-1528.43DNA ligase 4 OS=Yarrowia lipolytica GN=LIG4 PE=3 S... [more]
DNLI_NATPD1.592e-1432.93DNA ligase OS=Natronomonas pharaonis (strain DSM 2... [more]
DNLI4_MOUSE4.632e-1428.75DNA ligase 4 OS=Mus musculus GN=Lig4 PE=2 SV=1[more]
DNLI4_EMENI6.050e-1428.50DNA ligase 4 OS=Emericella nidulans GN=lig4 PE=3 S... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTTGAGATACTCAAAATCCAATTAGGATTAAATTTA
GAATGAAAATTATGACTCCTATACAGTATATCCAGGACCTTTCACGTCCA
GTTGACCACTAATGATGATAGGAATCATACATAAGATTTTTGGTTCTAAA
ACAGTTCTGATCAGATACATGGATTTGTGCAACAACCCAGCTGAATTTTA
CAAGAAAAGATCTTCAAAAATGAATGCAGCTTGAGATCCAGGCCTTCAAT
CATCTTCATTGTCATCTTGATTGTTTGGATGATTGAGTTTTTGAGCAGTA
TACATCTCTGCCACCTGCTCAGATGATGAAGCCTGCTCTGGGGTCTTGTC
TTCTCGAACACGAATTAGGCGAGGAAACCGGAGAGAAATGCCCTTATCAG
GATCCACAACACCAATGGCAGCACGATGAACAGGGCTAATAGTCAAGTCC
GCAGCTTTCACCTCCCAAACCTCTGTTGGCTCGAACCATACATCTGGACT
GATAGTATCAGCAAACCGGTAGTACGGCCTTGGTTTGGGTATAACTTTAG
AACGGAGACTGGAAGAACGTTCTTCAAGCATCGCTTCAGAAAATCCAGTG
CCTATTTTACATATGCTTTGAAATTCTTCATTATTGCTGTCATAACATGC
CAACAGAAAGGCACCATAAACACCTGTACGTTTCCCACGGCCATGAAATG
CAGCAATGGGTACTAAATCCAGCGAGTCTCCAATACTCTCAATGTAATCT
TTCTTTAATTTTAGCCAGTTAAGCGATCGCTTTGAAGGCTCATATGTAGC
ATCTCGA
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