CX078278

Overview
NameCX078278
Unique NameCX078278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI2_HALWD (DNA ligase 2 OS=Haloquadratum walsbyi (strain DSM 16790) GN=lig2 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14
Identity = 53/172 (30.81%), Postives = 82/172 (47.67%), Query Frame = -2
Query:  291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEE-FQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803
            D+TY P  R  +WLK K D      ++LDLV   A  G G+R  V+G F+++   + +E+ F S+ K+ TG ++  L   +  LR        P+ R  D     V  EP  V EV   ++  SP +         D G +LRFPR++ +R DK      S  ++  + T +
Sbjct:  468 DSTYNPGSRGQHWLKHKPDV-----ETLDLVVTGAEWGEGRRANVFGTFVVSARTTADEQQFNSLGKVATGLTDDQLTTLTEQLR--------PHVRSED--GQTVMIEPAIVVEVGYEEIQRSPTY---------DSGFALRFPRVVGIRHDKAISDVDSLSRIKHLTTGE 615          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_UNCMA (DNA ligase OS=Uncultured methanogenic archaeon RC-I GN=lig PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13
Identity = 50/172 (29.07%), Postives = 88/172 (51.16%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            +ATY P  R    +K+K     S+ D+LDL  ++A  G G++ G   +F +A  D    ++  + ++ +GFS+  L E +  L+  +  +   + R  D         P  + EVK  ++  SP++ +         G +LRFPRL+RVR+D +PE+ +S  +V  +Y  Q+
Sbjct:  410 NATYTPGVRGKKMVKIK-----SVLDTLDLAIVSAEWGHGRKAGWLTSFEVAALDEETGDYVILGRVASGFSDEQLIEMTEKLKPLITGE---HGRIVDV-------RPEIIVEVKFEEIQKSPIYSS---------GYALRFPRLVRVRDDLSPEEVNSFTRVMNIYNVQQ 557          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_ORYSJ (Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 2.299e-13
Identity = 61/210 (29.05%), Postives = 96/210 (45.71%), Query Frame = -2
Query:  255 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFL--LACYDSNN---EEFQSICKIGTGFS----EAMLEERSSSLRSKVIPKPRPYYRFADTIS-----PDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGI------------SLRFPRLIRVREDKTPEQASSSEQVAE-MYTAQKLNHPNNQDDNE 803
            ++ +EP  RS  WLKLK DYI + G  LD++ I  ++G G+R G    FL  LA    +N   + F S C++GTG S    +A++ +     R    PK  P  RF +  +     PDVW E  +   V+     I  + +    ++     I            SLRFPR+ R+R DK   +    +   + ++++    H    DDN+
Sbjct:  505 ESKWEPGDRSGKWLKLKPDYIHA-GADLDVIIIGGYYGSGRRGGEVAQFLVGLAVPSDDNSYPKRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKKPP--RFYEVTNHSKERPDVWIESPDKQSVRFRKHLIYCITKCRSVIISITSDIRTIKSEVFAAPYSLRFPRIQRLRYDKPWHECLDVQAFVDIVHSSNGTTHRAADDDND 711          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_ASPFU (DNA ligase 4 OS=Aspergillus fumigatus GN=lig4 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13
Identity = 50/184 (27.17%), Postives = 92/184 (50.00%), Query Frame = -2
Query:  279 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLL--------ACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDK-GISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNH 794
            Y  ++R  +W+K+K +Y+   G+SLDL+ I  ++G G+R G   +FL         A   ++  +  S CK+G GF+    A +   +     +  PK +P   + +    D  +E  ++W +K  D  +  V  A++   D  + G++LRFPR  R+R DK  + A S ++  ++ +  +  H
Sbjct:  501 YRLNERHDDWMKVKPEYMTEFGESLDLIVIGGYYGSGRRGGNLSSFLCGLRVDDGHASQGASASKCYSFCKVGGGFNAADYANIRHHTDGKWMEWNPK-KPPTAYIELAGRDAQYERPDMW-IKPEDSVVICVKAASVSASDQFRLGLTLRFPRFKRLRMDKDWKSALSVQEFLDLKSNVEQEH 682          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_ARATH (DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13
Identity = 61/200 (30.50%), Postives = 91/200 (45.50%), Query Frame = -2
Query:  258 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN-----EEFQSICKIGTGFSEAMLEERSSSL----RSKVIPKPRP--YYRFADTIS--PDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMY-----TAQKLNHPNNQDDN 803
            ++ +EP  RS  W+KLK +YI + G  LD++ I  ++G G+R G    FL+A  D          F S C++GTG S+  L    S L    R    PK  P  +Y+  +     PDVW +  E   + +    I  + R+ + V       SLRFPR+ +VR DK   +    +   E+      T QK     +  DN
Sbjct:  426 ESKWEPGDRSGKWMKLKPEYIRA-GADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTI-RSEVFVAP----YSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDN 619          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_PONAB (DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12
Identity = 45/174 (25.86%), Postives = 86/174 (49.43%), Query Frame = -2
Query:  303 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYD-----SNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 794
            Y+P KR   WLK+K +Y+  + D LD++ +  + G+G R G+   FL A  +          F ++ ++G+G +   L +    L     P   K  P      T  P+V+ EP  + + ++KAA++  S +++          G +LRFPR+ ++R+DK   +  + + + ++
Sbjct:  438 YKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFHKKAPPSSILCGTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKT---------GCTLRFPRIEKIRDDKEWHECMTLDDLEQL 602          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_HUMAN (DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12
Identity = 45/174 (25.86%), Postives = 86/174 (49.43%), Query Frame = -2
Query:  303 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYD-----SNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 794
            Y+P KR   WLK+K +Y+  + D LD++ +  + G+G R G+   FL A  +          F ++ ++G+G +   L +    L     P   K  P      T  P+V+ EP  + + ++KAA++  S +++          G +LRFPR+ ++R+DK   +  + + + ++
Sbjct:  438 YKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFHRKAPPSSILCGTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKT---------GCTLRFPRIEKIRDDKEWHECMTLDDLEQL 602          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_NANEQ (DNA ligase OS=Nanoarchaeum equitans GN=lig PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 47/172 (27.33%), Postives = 91/172 (52.91%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            +A Y+P +R    +KLK        ++LDLV +AA  G GKR+G   +F +A  D +   +  + ++GTG  E   +ER+  +  + + +    Y +       V+ +P  V EV   ++  SP +++         G +LRFPR++R+R D++P++  + +++ ++Y  Q+
Sbjct:  407 NAPYQPGRRVGYMVKLKPTL-----ETLDLVIVAAEWGEGKRSGWLTSFTVAALDKDTGNYLEVGEVGTGIKEK--KERAEDITFEELTELLKPYIYKQE-GKKVYVKPKIVVEVAYEEIQESPRYKS---------GFALRFPRIVRIRFDRSPKEIDTIDRIKQIYEMQR 561          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_HALLT (DNA ligase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=lig PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12
Identity = 49/172 (28.49%), Postives = 82/172 (47.67%), Query Frame = -2
Query:  288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803
            +A Y P  R  +WLK K D      ++LD V + A  G G+R  ++G FLL    + ++E  +I K+ TG ++  L + +  L   V+ +             ++   P  V EV   ++  SP + +         G +LRFPR + VR+DK+ + A S E+V  +   +K
Sbjct:  448 EAAYTPGNRGRDWLKRKPDV-----ETLDAVVVGAEWGEGRRAELFGTFLLGVR-AGDDELATIGKVATGLTDEELADLTERLEPHVVSED----------GTEIEIRPEVVLEVGYEEIQTSPTYSS---------GYALRFPRFVGVRDDKSVDDADSLERVVRLAGDEK 594          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_NPVLD (DNA ligase OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=LIG PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 48/177 (27.12%), Postives = 94/177 (53.11%), Query Frame = -2
Query:  303 RDATYEPSKRSLNWLKLKKDYI--ESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPR----PYYRFADTISPDVWF---EPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 806
            R ++Y P+KR  +W K+KK+++   ++ D+LDLV + A++G G+       FL+ C D  +  + ++ K+ +G ++A L   S  LR  ++  PR     ++   +++ P +     E   VWE+  +++      +A IG      G+++RFPR+ R R DK    A+  ++  ++
Sbjct:  352 RLSSYAPNKR--DWFKMKKEHLCDGALVDTLDLVVLGAYYGTGRNCRKMSVFLMGCLDRESNVWTTVTKVHSGLADAALTALSKELR-PLMAAPRDDLPEWFDCNESMVPHLLAADPEKMPVWEIACSEM------KANIGA--HTAGVTMRFPRVKRFRPDKDWSTATDLQEAEQL 517          
The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DNLI2_HALWD6.050e-1430.81DNA ligase 2 OS=Haloquadratum walsbyi (strain DSM ... [more]
DNLI_UNCMA1.348e-1329.07DNA ligase OS=Uncultured methanogenic archaeon RC-... [more]
DNLI4_ORYSJ2.299e-1329.05Putative DNA ligase 4 OS=Oryza sativa subsp. japon... [more]
DNLI4_ASPFU5.122e-1327.17DNA ligase 4 OS=Aspergillus fumigatus GN=lig4 PE=3... [more]
DNLI4_ARATH5.122e-1330.50DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 ... [more]
DNLI4_PONAB1.490e-1225.86DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1[more]
DNLI4_HUMAN1.490e-1225.86DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2[more]
DNLI_NANEQ2.542e-1227.33DNA ligase OS=Nanoarchaeum equitans GN=lig PE=3 SV... [more]
DNLI_HALLT2.542e-1228.49DNA ligase OS=Halorubrum lacusprofundi (strain ATC... [more]
DNLI_NPVLD9.659e-1227.12DNA ligase OS=Lymantria dispar multicapsid nuclear... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTTGAGATACTCAAAATCCAATTAGGATTAAATTTA
GAATGAAAATTATGACTCCTATACAGTATATCCAGGACCTTTCACGTCCA
GTTGACCACTAATGATGATAGGAATCATACATAAGATTTTTGGTTCTAAA
ACAGTTCTGATCAGATACATGGATTTGTGCAACAACCCAGCTGAATTTTA
CAAGAAAAGATCTTCAAAAATGAATGCAGCTTGAGATCCAGGCCTTCAAT
CATCTTCATTGTCATCTTGATTGTTTGGATGATTGAGTTTTTGAGCAGTA
TACATCTCTGCCACCTGCTCAGATGATGAAGCCTGCTCTGGGGTCTTGTC
TTCTCGAACACGAATTAGGCGAGGAAACCGGAGAGAAATGCCCTTATCAG
GATCCACAACACCAATGGCAGCACGATGAACAGGGCTAATAGTCAAGTCC
GCAGCTTTCACCTCCCAAACCTCTGTTGGCTCGAACCATACATCTGGACT
GATAGTATCAGCAAACCGGTAGTACGGCCTTGGTTTGGGTATAACTTTAG
AACGGAGACTGGAAGAACGTTCTTCAAGCATCGCTTCAGAAAATCCAGTG
CCTATTTTACATATGCTTTGAAATTCTTCATTATTGCTGTCATAACATGC
CAACAGAAAGGCACCATAAACACCTGTACGTTTCCCACGGCCATGAAATG
CAGCAATGGGTACTAAATCCAGCGAGTCTCCAATACTCTCAATGTAATCT
TTCTTTAATTTTAGCCAGTTAAGCGATCGCTTTGAAGGCTCATATGTAGC
ATCTCGA
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