CX078278
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI2_HALWD (DNA ligase 2 OS=Haloquadratum walsbyi (strain DSM 16790) GN=lig2 PE=3 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 6.050e-14 Identity = 53/172 (30.81%), Postives = 82/172 (47.67%), Query Frame = -2 Query: 291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEE-FQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803 D+TY P R +WLK K D ++LDLV A G G+R V+G F+++ + +E+ F S+ K+ TG ++ L + LR P+ R D V EP V EV ++ SP + D G +LRFPR++ +R DK S ++ + T + Sbjct: 468 DSTYNPGSRGQHWLKHKPDV-----ETLDLVVTGAEWGEGRRANVFGTFVVSARTTADEQQFNSLGKVATGLTDDQLTTLTEQLR--------PHVRSED--GQTVMIEPAIVVEVGYEEIQRSPTY---------DSGFALRFPRVVGIRHDKAISDVDSLSRIKHLTTGE 615
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_UNCMA (DNA ligase OS=Uncultured methanogenic archaeon RC-I GN=lig PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 1.348e-13 Identity = 50/172 (29.07%), Postives = 88/172 (51.16%), Query Frame = -2 Query: 288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803 +ATY P R +K+K S+ D+LDL ++A G G++ G +F +A D ++ + ++ +GFS+ L E + L+ + + + R D P + EVK ++ SP++ + G +LRFPRL+RVR+D +PE+ +S +V +Y Q+ Sbjct: 410 NATYTPGVRGKKMVKIK-----SVLDTLDLAIVSAEWGHGRKAGWLTSFEVAALDEETGDYVILGRVASGFSDEQLIEMTEKLKPLITGE---HGRIVDV-------RPEIIVEVKFEEIQKSPIYSS---------GYALRFPRLVRVRDDLSPEEVNSFTRVMNIYNVQQ 557
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_ORYSJ (Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2) HSP 1 Score: 76.2554 bits (186), Expect = 2.299e-13 Identity = 61/210 (29.05%), Postives = 96/210 (45.71%), Query Frame = -2 Query: 255 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFL--LACYDSNN---EEFQSICKIGTGFS----EAMLEERSSSLRSKVIPKPRPYYRFADTIS-----PDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGI------------SLRFPRLIRVREDKTPEQASSSEQVAE-MYTAQKLNHPNNQDDNE 803 ++ +EP RS WLKLK DYI + G LD++ I ++G G+R G FL LA +N + F S C++GTG S +A++ + R PK P RF + + PDVW E + V+ I + + ++ I SLRFPR+ R+R DK + + + ++++ H DDN+ Sbjct: 505 ESKWEPGDRSGKWLKLKPDYIHA-GADLDVIIIGGYYGSGRRGGEVAQFLVGLAVPSDDNSYPKRFLSFCRVGTGLSDEELDALVTKLKPHFRKNEYPKKPP--RFYEVTNHSKERPDVWIESPDKQSVRFRKHLIYCITKCRSVIISITSDIRTIKSEVFAAPYSLRFPRIQRLRYDKPWHECLDVQAFVDIVHSSNGTTHRAADDDND 711
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_ASPFU (DNA ligase 4 OS=Aspergillus fumigatus GN=lig4 PE=3 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13 Identity = 50/184 (27.17%), Postives = 92/184 (50.00%), Query Frame = -2 Query: 279 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLL--------ACYDSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDK-GISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQKLNH 794 Y ++R +W+K+K +Y+ G+SLDL+ I ++G G+R G +FL A ++ + S CK+G GF+ A + + + PK +P + + D +E ++W +K D + V A++ D + G++LRFPR R+R DK + A S ++ ++ + + H Sbjct: 501 YRLNERHDDWMKVKPEYMTEFGESLDLIVIGGYYGSGRRGGNLSSFLCGLRVDDGHASQGASASKCYSFCKVGGGFNAADYANIRHHTDGKWMEWNPK-KPPTAYIELAGRDAQYERPDMW-IKPEDSVVICVKAASVSASDQFRLGLTLRFPRFKRLRMDKDWKSALSVQEFLDLKSNVEQEH 682
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_ARATH (DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1) HSP 1 Score: 75.0998 bits (183), Expect = 5.122e-13 Identity = 61/200 (30.50%), Postives = 91/200 (45.50%), Query Frame = -2 Query: 258 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNN-----EEFQSICKIGTGFSEAMLEERSSSL----RSKVIPKPRP--YYRFADTIS--PDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMY-----TAQKLNHPNNQDDN 803 ++ +EP RS W+KLK +YI + G LD++ I ++G G+R G FL+A D F S C++GTG S+ L S L R PK P +Y+ + PDVW + E + + I + R+ + V SLRFPR+ +VR DK + + E+ T QK + DN Sbjct: 426 ESKWEPGDRSGKWMKLKPEYIRA-GADLDVLIIGGYYGSGRRGGEVAQFLVALADRAEANVYPRRFMSFCRVGTGLSDDELNTVVSKLKPYFRKNEHPKKAPPSFYQVTNHSKERPDVWIDSPEKSIILSITSDIRTI-RSEVFVAP----YSLRFPRIDKVRYDKPWHECLDVQAFVELVNSSNGTTQKQKESESTQDN 619
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_PONAB (DNA ligase 4 OS=Pongo abelii GN=DNL4 PE=2 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12 Identity = 45/174 (25.86%), Postives = 86/174 (49.43%), Query Frame = -2 Query: 303 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYD-----SNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 794 Y+P KR WLK+K +Y+ + D LD++ + + G+G R G+ FL A + F ++ ++G+G + L + L P K P T P+V+ EP + + ++KAA++ S +++ G +LRFPR+ ++R+DK + + + + ++ Sbjct: 438 YKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFHKKAPPSSILCGTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKT---------GCTLRFPRIEKIRDDKEWHECMTLDDLEQL 602
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_HUMAN (DNA ligase 4 OS=Homo sapiens GN=LIG4 PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.490e-12 Identity = 45/174 (25.86%), Postives = 86/174 (49.43%), Query Frame = -2 Query: 303 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYD-----SNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIP---KPRPYYRFADTISPDVWFEP--TEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 794 Y+P KR WLK+K +Y+ + D LD++ + + G+G R G+ FL A + F ++ ++G+G + L + L P K P T P+V+ EP + + ++KAA++ S +++ G +LRFPR+ ++R+DK + + + + ++ Sbjct: 438 YKPDKRGEGWLKIKPEYVSGLMDELDILIVGGYWGKGSRGGMMSHFLCAVAEKPPPGEKPSVFHTLSRVGSGCTMKELYDLGLKLAKYWKPFHRKAPPSSILCGTEKPEVYIEPCNSVIVQIKAAEIVPSDMYKT---------GCTLRFPRIEKIRDDKEWHECMTLDDLEQL 602
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_NANEQ (DNA ligase OS=Nanoarchaeum equitans GN=lig PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12 Identity = 47/172 (27.33%), Postives = 91/172 (52.91%), Query Frame = -2 Query: 288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803 +A Y+P +R +KLK ++LDLV +AA G GKR+G +F +A D + + + ++GTG E +ER+ + + + + Y + V+ +P V EV ++ SP +++ G +LRFPR++R+R D++P++ + +++ ++Y Q+ Sbjct: 407 NAPYQPGRRVGYMVKLKPTL-----ETLDLVIVAAEWGEGKRSGWLTSFTVAALDKDTGNYLEVGEVGTGIKEK--KERAEDITFEELTELLKPYIYKQE-GKKVYVKPKIVVEVAYEEIQESPRYKS---------GFALRFPRIVRIRFDRSPKEIDTIDRIKQIYEMQR 561
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_HALLT (DNA ligase OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=lig PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.542e-12 Identity = 49/172 (28.49%), Postives = 82/172 (47.67%), Query Frame = -2 Query: 288 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQK 803 +A Y P R +WLK K D ++LD V + A G G+R ++G FLL + ++E +I K+ TG ++ L + + L V+ + ++ P V EV ++ SP + + G +LRFPR + VR+DK+ + A S E+V + +K Sbjct: 448 EAAYTPGNRGRDWLKRKPDV-----ETLDAVVVGAEWGEGRRAELFGTFLLGVR-AGDDELATIGKVATGLTDEELADLTERLEPHVVSED----------GTEIEIRPEVVLEVGYEEIQTSPTYSS---------GYALRFPRFVGVRDDKSVDDADSLERVVRLAGDEK 594
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_NPVLD (DNA ligase OS=Lymantria dispar multicapsid nuclear polyhedrosis virus GN=LIG PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12 Identity = 48/177 (27.12%), Postives = 94/177 (53.11%), Query Frame = -2 Query: 303 RDATYEPSKRSLNWLKLKKDYI--ESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPR----PYYRFADTISPDVWF---EPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 806 R ++Y P+KR +W K+KK+++ ++ D+LDLV + A++G G+ FL+ C D + + ++ K+ +G ++A L S LR ++ PR ++ +++ P + E VWE+ +++ +A IG G+++RFPR+ R R DK A+ ++ ++ Sbjct: 352 RLSSYAPNKR--DWFKMKKEHLCDGALVDTLDLVVLGAYYGTGRNCRKMSVFLMGCLDRESNVWTTVTKVHSGLADAALTALSKELR-PLMAAPRDDLPEWFDCNESMVPHLLAADPEKMPVWEIACSEM------KANIGA--HTAGVTMRFPRVKRFRPDKDWSTATDLQEAEQL 517 The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bpback to top |