CX078278

Overview
NameCX078278
Unique NameCX078278
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_HALMA (DNA ligase OS=Haloarcula marismortui GN=lig PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12
Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = -2
Query:  291 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 800
            A Y P KR  +W K K D      ++LD V   A  G G+R  V G+F L+     ++ + ++  + TG ++  L++ +            PY R  D    DV  +P  V+EV   ++  S  + +         G +LRFPR + VREDKTP+ A S  +V  +  +Q
Sbjct:  411 AAYSPGKRGKHWRKRKPDV-----ETLDCVVTGAEWGEGRRANVLGSFELSV--RTDDGYATVGNVATGITDEELDDLTERFE--------PYIRSED--GRDVVLDPAVVFEVGYEEIQASQSYAS---------GYALRFPRFLSVREDKTPDSADSLARVERLAESQ 554          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_KORCO (DNA ligase 1 OS=Korarchaeum cryptofilum (strain OPF8) GN=lig1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11
Identity = 53/171 (30.99%), Postives = 80/171 (46.78%), Query Frame = -2
Query:  291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803
            ++ Y P  R   WLK+K+       +SLDLV +AA  G G+R   Y  + LA  D  + EF  + K   G ++   E  +  L    I K     R            P  V EV   ++  SP +++         G +LRF R+ R+R+DK+PE+A + E+V E+Y  Q
Sbjct:  390 NSPYIPGVRGRYWLKVKET------NSLDLVIVAAERGYGRRHRWYSDYYLAARDPESGEFLIVGKTFKGLTDEEFEWITQKLEELSIGKEGKLIRV----------RPRIVVEVSFNEIQRSPKYKS---------GFALRFARITRIRDDKSPEEADTIERVREIYEKQ 535          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_ASPOR (DNA ligase 4 OS=Aspergillus oryzae GN=lig4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11
Identity = 49/175 (28.00%), Postives = 87/175 (49.71%), Query Frame = -2
Query:  303 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFL--LACYDSNNEE------FQSICKIGTGFSEAMLEERSSSLRSK--VIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDK-GISLRFPRLIRVREDKTPEQASSSEQVAEM 794
            Y  ++R  +W+K+K +Y+   G+SLD+V I  ++G G R G   +FL  L   D+++ +        S CK+G GF+ A           K       +P   + +    D  +E  ++W +K  D  +  V  A++ V D  + G++LRFPR  ++R DK  + A S ++  ++
Sbjct:  498 YRLNERHDDWMKVKPEYMTEFGESLDVVVIGGYYGSGHRGGGLSSFLCGLRVDDAHSSQGMVASKCYSFCKVGGGFTAADYANIRHHTDGKWHEWKSRKPPTTYIELAGGDAQYERPDMW-IKPEDSVVLCVKAASVAVSDQFRIGLTLRFPRFKKLRMDKDWKSALSVQEFLDL 671          
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_PHANO (DNA ligase 4 OS=Phaeosphaeria nodorum GN=LIG4 PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11
Identity = 53/184 (28.80%), Postives = 84/184 (45.65%), Query Frame = -2
Query:  303 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACY--------DSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPRP-------YYRFADTISPDVWFEPTE--VWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 794
            Y  + R+ +W+K+K +Y+   G+SLD + +  + G G R G + +FL A          D++ E+  S  K+G GFS    A +  R+        P+  P       + +      PD W  P++  V E KAA +  S   R           ++LRFPR   +R DK  +QA S E+  E+
Sbjct:  507 YRLNDRNADWMKVKPEYMSEFGESLDCIVVGGYFGSGHRGGAHSSFLCALLLNKDAKPGDADYEKCWSFFKVGGGFSREDYAAIRGRTEGKWKDWDPRRPPPIIELGGHEQNRQHERPDQWIHPSDSVVLECKAASVEGSDKFRF---------NLTLRFPRFRMLRTDKRWDQALSREEFYEI 681          
The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94
Match NameE-valueIdentityDescription
DNLI_HALMA9.659e-1230.00DNA ligase OS=Haloarcula marismortui GN=lig PE=3 S... [more]
DNLI1_KORCO1.261e-1130.99DNA ligase 1 OS=Korarchaeum cryptofilum (strain OP... [more]
DNLI4_ASPOR2.152e-1128.00DNA ligase 4 OS=Aspergillus oryzae GN=lig4 PE=3 SV... [more]
DNLI4_PHANO4.794e-1128.80DNA ligase 4 OS=Phaeosphaeria nodorum GN=LIG4 PE=3... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B06_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B06-D12-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bp
TTTTTTTTTTTTTTTTTGAGATACTCAAAATCCAATTAGGATTAAATTTA
GAATGAAAATTATGACTCCTATACAGTATATCCAGGACCTTTCACGTCCA
GTTGACCACTAATGATGATAGGAATCATACATAAGATTTTTGGTTCTAAA
ACAGTTCTGATCAGATACATGGATTTGTGCAACAACCCAGCTGAATTTTA
CAAGAAAAGATCTTCAAAAATGAATGCAGCTTGAGATCCAGGCCTTCAAT
CATCTTCATTGTCATCTTGATTGTTTGGATGATTGAGTTTTTGAGCAGTA
TACATCTCTGCCACCTGCTCAGATGATGAAGCCTGCTCTGGGGTCTTGTC
TTCTCGAACACGAATTAGGCGAGGAAACCGGAGAGAAATGCCCTTATCAG
GATCCACAACACCAATGGCAGCACGATGAACAGGGCTAATAGTCAAGTCC
GCAGCTTTCACCTCCCAAACCTCTGTTGGCTCGAACCATACATCTGGACT
GATAGTATCAGCAAACCGGTAGTACGGCCTTGGTTTGGGTATAACTTTAG
AACGGAGACTGGAAGAACGTTCTTCAAGCATCGCTTCAGAAAATCCAGTG
CCTATTTTACATATGCTTTGAAATTCTTCATTATTGCTGTCATAACATGC
CAACAGAAAGGCACCATAAACACCTGTACGTTTCCCACGGCCATGAAATG
CAGCAATGGGTACTAAATCCAGCGAGTCTCCAATACTCTCAATGTAATCT
TTCTTTAATTTTAGCCAGTTAAGCGATCGCTTTGAAGGCTCATATGTAGC
ATCTCGA
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