CX078278
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI_HALMA (DNA ligase OS=Haloarcula marismortui GN=lig PE=3 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 9.659e-12 Identity = 51/170 (30.00%), Postives = 80/170 (47.06%), Query Frame = -2 Query: 291 ATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 800 A Y P KR +W K K D ++LD V A G G+R V G+F L+ ++ + ++ + TG ++ L++ + PY R D DV +P V+EV ++ S + + G +LRFPR + VREDKTP+ A S +V + +Q Sbjct: 411 AAYSPGKRGKHWRKRKPDV-----ETLDCVVTGAEWGEGRRANVLGSFELSV--RTDDGYATVGNVATGITDEELDDLTERFE--------PYIRSED--GRDVVLDPAVVFEVGYEEIQASQSYAS---------GYALRFPRFLSVREDKTPDSADSLARVERLAESQ 554
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI1_KORCO (DNA ligase 1 OS=Korarchaeum cryptofilum (strain OPF8) GN=lig1 PE=3 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 1.261e-11 Identity = 53/171 (30.99%), Postives = 80/171 (46.78%), Query Frame = -2 Query: 291 DATYEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACYDSNNEEFQSICKIGTGFSEAMLEERSSSLRSKVIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEMYTAQ 803 ++ Y P R WLK+K+ +SLDLV +AA G G+R Y + LA D + EF + K G ++ E + L I K R P V EV ++ SP +++ G +LRF R+ R+R+DK+PE+A + E+V E+Y Q Sbjct: 390 NSPYIPGVRGRYWLKVKET------NSLDLVIVAAERGYGRRHRWYSDYYLAARDPESGEFLIVGKTFKGLTDEEFEWITQKLEELSIGKEGKLIRV----------RPRIVVEVSFNEIQRSPKYKS---------GFALRFARITRIRDDKSPEEADTIERVREIYEKQ 535
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_ASPOR (DNA ligase 4 OS=Aspergillus oryzae GN=lig4 PE=3 SV=1) HSP 1 Score: 69.707 bits (169), Expect = 2.152e-11 Identity = 49/175 (28.00%), Postives = 87/175 (49.71%), Query Frame = -2 Query: 303 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFL--LACYDSNNEE------FQSICKIGTGFSEAMLEERSSSLRSK--VIPKPRPYYRFADTISPDVWFEPTEVWEVKAADLTISPVHRAAIGVVDPDK-GISLRFPRLIRVREDKTPEQASSSEQVAEM 794 Y ++R +W+K+K +Y+ G+SLD+V I ++G G R G +FL L D+++ + S CK+G GF+ A K +P + + D +E ++W +K D + V A++ V D + G++LRFPR ++R DK + A S ++ ++ Sbjct: 498 YRLNERHDDWMKVKPEYMTEFGESLDVVVIGGYYGSGHRGGGLSSFLCGLRVDDAHSSQGMVASKCYSFCKVGGGFTAADYANIRHHTDGKWHEWKSRKPPTTYIELAGGDAQYERPDMW-IKPEDSVVLCVKAASVAVSDQFRIGLTLRFPRFKKLRMDKDWKSALSVQEFLDL 671
BLAST of CX078278 vs. ExPASy Swiss-Prot
Match: DNLI4_PHANO (DNA ligase 4 OS=Phaeosphaeria nodorum GN=LIG4 PE=3 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 4.794e-11 Identity = 53/184 (28.80%), Postives = 84/184 (45.65%), Query Frame = -2 Query: 303 YEPSKRSLNWLKLKKDYIESIGDSLDLVPIAAFHGRGKRTGVYGAFLLACY--------DSNNEEFQSICKIGTGFSE---AMLEERSSSLRSKVIPKPRP-------YYRFADTISPDVWFEPTE--VWEVKAADLTISPVHRAAIGVVDPDKGISLRFPRLIRVREDKTPEQASSSEQVAEM 794 Y + R+ +W+K+K +Y+ G+SLD + + + G G R G + +FL A D++ E+ S K+G GFS A + R+ P+ P + + PD W P++ V E KAA + S R ++LRFPR +R DK +QA S E+ E+ Sbjct: 507 YRLNDRNADWMKVKPEYMSEFGESLDCIVVGGYFGSGHRGGAHSSFLCALLLNKDAKPGDADYEKCWSFFKVGGGFSREDYAAIRGRTEGKWKDWDPRRPPPIIELGGHEQNRQHERPDQWIHPSDSVVLECKAASVEGSDKFRF---------NLTLRFPRFRMLRTDKRWDQALSREEFYEI 681 The following BLAST results are available for this feature:
BLAST of CX078278 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 94
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078278 ID=CX078278; Name=CX078278; organism=Citrus sinensis; type=EST; length=807bpback to top |