CX078277

Overview
NameCX078277
Unique NameCX078277
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length803
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA2_HUMAN (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.745e-21
Identity = 66/204 (32.35%), Postives = 94/204 (46.08%), Query Frame = 1
Query:  172 WE-PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKW 768
            W+ P    Y++ +S EE E +  +A P + ++TV D  TG    +  R S  ++L                  T L ++  E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDVE GG TVFP+                    G +I PK G A+ ++++      D  + H  CPV+ G KW S KW
Sbjct:  333 WDSPHIVRYYDVMSDEEIERIKEIAKPKLARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATFLNYMSDVEAGGATVFPDL-------------------GAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKW 517          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA3_RAT (Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.633e-19
Identity = 68/210 (32.38%), Postives = 95/210 (45.24%), Query Frame = 1
Query:  160 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLEN--GEGLQVLHYEAGQKYEPHFDYFMDEFNT---KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW-SMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            EVI   P   +YH+F+S EE + +  LA P +++S V   +  K      R S   +L               A  T L ++    E LQV++Y  G  YEPHFD+     +       G R AT+++YLS VE GG T F    GN S                   P + +A LFW ++      D  +LH GCPV+ G+KW + KWI
Sbjct:  340 EVIHLRPLVALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKDTVDPVLVTLDRRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYKMKSGNRAATLMIYLSSVEAGGATAF--IYGNFSV------------------PVVKNAALFWWNLHRSGEGDDDTLHAGCPVLVGDKWVANKWI 527          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA3_HUMAN (Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.133e-19
Identity = 66/209 (31.58%), Postives = 92/209 (44.02%), Query Frame = 1
Query:  160 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLEN--GEGLQVLHYEAGQKYEPHFDYFMDEFNT---KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            EVI  EP   +YH+F+S  E + +  LA P +++S V   +  K      R S   +L               A  T L +     E LQV++Y  G  YEPHFD+     +       G R+AT ++YLS VE GG T F  A                    LS+      AL +W++      D  +LH GCPV+ G+KW + KWI
Sbjct:  340 EVIHLEPYIALYHDFVSDSEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKDTVDPKLVTLNHRIAALTGLDVRPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSGNRVATFMIYLSSVEAGGATAFIYAN-------------------LSVPVVRNAALFWWNLHRSGEGDSDTLHAGCPVLVGDKWVANKWI 527          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA3_MOUSE (Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.638e-19
Identity = 67/210 (31.90%), Postives = 95/210 (45.24%), Query Frame = 1
Query:  160 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLEN--GEGLQVLHYEAGQKYEPHFDYFMDEFNT---KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW-SMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            EV+   P   +YH+F+S EE + +  LA P +++S V   +  K      R S   +L               A  T L ++    E LQV++Y  G  YEPHFD+     +       G R+AT ++YLS VE GG T F    GN S                   P + +A LFW ++      D  +LH GCPV+ G+KW + KWI
Sbjct:  338 EVVHLRPLIALYHDFVSDEEAQKIRELAEPWLQRSVVASGE--KQLQVEYRISKSAWLKDTVDPMLVTLDHRIAALTGLDIQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSGNRVATFMIYLSSVEAGGATAF--IYGNFSV------------------PVVKNAALFWWNLHRSGEGDGDTLHAGCPVLVGDKWVANKWI 525          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HA3_BOVIN (Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.638e-19
Identity = 68/210 (32.38%), Postives = 95/210 (45.24%), Query Frame = 1
Query:  160 EVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLEN--GEGLQVLHYEAGQKYEPHFDYFMDEFNT---KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW-SMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 771
            EVI  EP   +YH+F+S  E + +  LA P +++S V   +  K      R S   +L               A  T L ++    E LQV++Y  G  YEPHFD+     +     N G R+AT ++YLS VE GG T F    GN S                   P + +A LFW ++      D  +LH  CPV+ G+KW + KWI
Sbjct:  340 EVIHLEPYVVLYHDFVSDAEAQTIRGLAEPWLQRSVVASGE--KQLPVEYRISKSAWLKDTVDPVLVTLDHRIAALTGLDVQPPYAEYLQVVNYGIGGHYEPHFDHATSPSSPLYRMNSGNRVATFMIYLSSVEAGGATAF--IYGNFSV------------------PVVKNAALFWWNLHRSGEGDGDTLHAACPVLVGDKWVANKWI 527          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4H_MIMIV (Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L593 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.431e-15
Identity = 57/208 (27.40%), Postives = 86/208 (41.35%), Query Frame = 1
Query:  181 RAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXXADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-----KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDA-ALDPSSLHGGCPVIKGNKWSSTKWIRVNEY 786
            + FV +N ++  +C+ ++  A        + DS      D  +R S   +++                F  +P +N E LQV+ Y   Q Y  H D   D         + GGQR+ TVL+YL++    G T FPN                        KPK GDAL+F+ +  ++    P SLH G PV  G KW +  W R  ++
Sbjct:   59 KPFVLNNLINPTKCQEIMQFAN-----GKLFDSQVLSGTDKNIRNSQQMWISKNNPMVKPIFENICRQFN-VPFDNAEDLQVVRYLPNQYYNEHHDSCCDSSKQCSEFIERGGQRILTVLIYLNNEFSDGHTYFPN-------------------LNQKFKPKTGDALVFYPLANNSNKCHPYSLHAGMPVTSGEKWIANLWFRERKF 241          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HTM_MOUSE (Transmembrane prolyl 4-hydroxylase OS=Mus musculus GN=P4htm PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 51/159 (32.08%), Postives = 69/159 (43.40%), Query Frame = 1
Query:  400 LENGEGLQVLHYEAGQKYEPHFD--------------YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELS-------------ECGKTGLSIKPKMGDALLFWSMKPDAA-----LDPSSLHGGCPVIKGNKWSSTKWIRVN 780
            +E  E LQV+ Y  G  Y  H D                 +E        R  TVL YL++V  GGETVFP A         ++E+S              C K  L +KP+ G A+ +++  PD       +D  SLHGGC V +G KW +  WI V+
Sbjct:  309 VEFSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRT-----YDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGEVDDYSLHGGCLVTRGTKWIANNWINVD 462          
BLAST of CX078277 vs. ExPASy Swiss-Prot
Match: P4HTM_HUMAN (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.625e-12
Identity = 51/159 (32.08%), Postives = 69/159 (43.40%), Query Frame = 1
Query:  400 LENGEGLQVLHYEAGQKYEPHFD--------------YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELS-------------ECGKTGLSIKPKMGDALLFWSMKPDAA-----LDPSSLHGGCPVIKGNKWSSTKWIRVN 780
            +E  E LQV+ Y  G  Y  H D                 +E        R  TVL YL++V  GGETVFP A         ++E+S              C K  L +KP+ G A+ +++  PD       +D  SLHGGC V +G KW +  WI V+
Sbjct:  308 VELSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRT-----YDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGDVDDYSLHGGCLVTRGTKWIANNWINVD 461          
The following BLAST results are available for this feature:
BLAST of CX078277 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
P4HA2_HUMAN1.745e-2132.35Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie... [more]
P4HA3_RAT1.633e-1932.38Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus nor... [more]
P4HA3_HUMAN2.133e-1931.58Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapie... [more]
P4HA3_MOUSE3.638e-1931.90Prolyl 4-hydroxylase subunit alpha-3 OS=Mus muscul... [more]
P4HA3_BOVIN3.638e-1932.38Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus... [more]
P4H_MIMIV1.431e-1527.40Putative prolyl 4-hydroxylase OS=Acanthamoeba poly... [more]
P4HTM_MOUSE5.625e-1232.08Transmembrane prolyl 4-hydroxylase OS=Mus musculus... [more]
P4HTM_HUMAN5.625e-1232.08Transmembrane prolyl 4-hydroxylase OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B05-D10-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078277 ID=CX078277; Name=CX078277; organism=Citrus sinensis; type=EST; length=803bp
ATCATGTTCACGTTCGCGATTTTGATTCTTCTCGCGTTCGGGATCCTATC
CATGCCTAGCAGTTCCGGCGATTCGCGGAAAGCCAACGATCTCAGCTCCA
TTGTACGCAAGTCTATGGAGAGAAGTGAAGGAGATGAAGGGAGAGCAGAG
CAATGGGTTGAGGTGATCTCTTGGGAGCCTCGAGCTTTTGTTTATCATAA
TTTCTTGAGCAAGGAGGAGTGCGAGTACCTAATCAATCTTGCCACGCCTC
ATATGAGAAAGTCGACTGTTGTTGATAGTGATACTGGCAAGAGCAAAGAT
AGCAGGGTTCGGACAAGTTCTGGAACATTTCTTGCTAGAGGACGAGACAA
AATTATTAGAGATATTGAGAAAAGGATTGCAGATTTCACTTTCTTGCCTT
TAGAGAATGGAGAAGGACTTCAAGTTCTCCATTATGAAGCTGGACAAAAA
TATGAGCCTCACTTTGACTATTTCATGGATGAGTTCAACACCAAGAATGG
GGGGCAACGCATGGCTACGGTGCTAATGTACCTCTCAGACGTTGAAGAAG
GAGGTGAGACAGTCTTTCCTAATGCCCAAGGGAACATCAGTGCTGTGCCT
TGGTGGAATGAGTTATCTGAATGTGGAAAGACAGGACTTTCTATTAAACC
AAAAATGGGTGATGCATTGCTTTTCTGGAGCATGAAGCCCGATGCCGCTT
TAGATCCTTCTAGTTTGCATGGAGGTTGCCCTGTGATTAAAGGCAATAAG
TGGTCATCTACAAAATGGATACGTGTGAATGAGTATAAGGTTTGAACTAC
TGG
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