CX078276

Overview
NameCX078276
Unique NameCX078276
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA2_HUMAN (Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapiens GN=P4HA2 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.697e-17
Identity = 57/176 (32.39%), Postives = 80/176 (45.45%), Query Frame = -2
Query:  360 MRKSTVVDSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFM----DEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKW 875
            + ++TV D  TG    +  R S  ++L              +   T L ++  E LQV +Y  G +YEPHFD+      D F     G R+AT L Y+SDVE GG TVFP+                    G +I PK G A+ ++++      D  + H  CPV+ G KW S KW
Sbjct:  361 LARATVRDPKTGVLTVASYRVSKSSWLEEDDDPVVARVNRRMQHITGLTVKTAELLQVANYGVGGQYEPHFDFSRNDERDTFKHLGTGNRVATFLNYMSDVEAGGATVFPDL-------------------GAAIWPKKGTAVFWYNLLRSGEGDYRTRHAACPVLVGCKWVSNKW 517          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4H_MIMIV (Putative prolyl 4-hydroxylase OS=Acanthamoeba polyphaga mimivirus GN=MIMI_L593 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.016e-13
Identity = 52/177 (29.38%), Postives = 72/177 (40.68%), Query Frame = -2
Query:  342 DSDTGKSKDSRVRTSSGTFLAXXXXXXXXXXXXXIADFTFLPLENGEGLQVLHYEAGQKYEPHFDYFMDEFNT-----KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDA-ALDPSSLHGGCPVIKGNKWSSTKWIRVNEY 854
            DS      D  +R S   +++                F  +P +N E LQV+ Y   Q Y  H D   D         + GGQR+ TVL+YL++    G T FPN                        KPK GDAL+F+ +  ++    P SLH G PV  G KW +  W R  ++
Sbjct:   85 DSQVLSGTDKNIRNSQQMWISKNNPMVKPIFENICRQFN-VPFDNAEDLQVVRYLPNQYYNEHHDSCCDSSKQCSEFIERGGQRILTVLIYLNNEFSDGHTYFPN-------------------LNQKFKPKTGDALVFYPLANNSNKCHPYSLHAGMPVTSGEKWIANLWFRERKF 241          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA3_HUMAN (Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapiens GN=P4HA3 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.439e-13
Identity = 44/123 (35.77%), Postives = 59/123 (47.97%), Query Frame = -2
Query:  357 EGLQVLHYEAGQKYEPHFDYFMDEFNT---KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFWSMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 716
            E LQV++Y  G  YEPHFD+     +       G R+AT ++YLS VE GG T F  A                    LS+      AL +W++      D  +LH GCPV+ G+KW + KWI
Sbjct:  424 EYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSGNRVATFMIYLSSVEAGGATAFIYAN-------------------LSVPVVRNAALFWWNLHRSGEGDSDTLHAGCPVLVGDKWVANKWI 527          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA3_RAT (Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus norvegicus GN=P4ha3 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.662e-13
Identity = 46/124 (37.10%), Postives = 61/124 (49.19%), Query Frame = -2
Query:  357 EGLQVLHYEAGQKYEPHFDYFMDEFNT---KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW-SMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 716
            E LQV++Y  G  YEPHFD+     +       G R AT+++YLS VE GG T F    GN S                   P + +A LFW ++      D  +LH GCPV+ G+KW + KWI
Sbjct:  424 EYLQVVNYGIGGHYEPHFDHATSPSSPLYKMKSGNRAATLMIYLSSVEAGGATAF--IYGNFSV------------------PVVKNAALFWWNLHRSGEGDDDTLHAGCPVLVGDKWVANKWI 527          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA3_MOUSE (Prolyl 4-hydroxylase subunit alpha-3 OS=Mus musculus GN=P4ha3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.001e-12
Identity = 46/124 (37.10%), Postives = 61/124 (49.19%), Query Frame = -2
Query:  357 EGLQVLHYEAGQKYEPHFDYFMDEFNT---KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW-SMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 716
            E LQV++Y  G  YEPHFD+     +       G R+AT ++YLS VE GG T F    GN S                   P + +A LFW ++      D  +LH GCPV+ G+KW + KWI
Sbjct:  422 EYLQVVNYGIGGHYEPHFDHATSPSSPLYRMKSGNRVATFMIYLSSVEAGGATAF--IYGNFSV------------------PVVKNAALFWWNLHRSGEGDGDTLHAGCPVLVGDKWVANKWI 525          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HA3_BOVIN (Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus GN=P4HA3 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.001e-12
Identity = 46/124 (37.10%), Postives = 61/124 (49.19%), Query Frame = -2
Query:  357 EGLQVLHYEAGQKYEPHFDYFMDEFNT---KNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELSECGKTGLSIKPKMGDALLFW-SMKPDAALDPSSLHGGCPVIKGNKWSSTKWI 716
            E LQV++Y  G  YEPHFD+     +     N G R+AT ++YLS VE GG T F    GN S                   P + +A LFW ++      D  +LH  CPV+ G+KW + KWI
Sbjct:  424 EYLQVVNYGIGGHYEPHFDHATSPSSPLYRMNSGNRVATFMIYLSSVEAGGATAF--IYGNFSV------------------PVVKNAALFWWNLHRSGEGDGDTLHAACPVLVGDKWVANKWI 527          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HTM_MOUSE (Transmembrane prolyl 4-hydroxylase OS=Mus musculus GN=P4htm PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 51/159 (32.08%), Postives = 69/159 (43.40%), Query Frame = -2
Query:  348 LENGEGLQVLHYEAGQKYEPHFD--------------YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELS-------------ECGKTGLSIKPKMGDALLFWSMKPDAA-----LDPSSLHGGCPVIKGNKWSSTKWIRVN 728
            +E  E LQV+ Y  G  Y  H D                 +E        R  TVL YL++V  GGETVFP A         ++E+S              C K  L +KP+ G A+ +++  PD       +D  SLHGGC V +G KW +  WI V+
Sbjct:  309 VEFSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRT-----YDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGEVDDYSLHGGCLVTRGTKWIANNWINVD 462          
BLAST of CX078276 vs. ExPASy Swiss-Prot
Match: P4HTM_HUMAN (Transmembrane prolyl 4-hydroxylase OS=Homo sapiens GN=P4HTM PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 6.486e-12
Identity = 51/159 (32.08%), Postives = 69/159 (43.40%), Query Frame = -2
Query:  348 LENGEGLQVLHYEAGQKYEPHFD--------------YFMDEFNTKNGGQRMATVLMYLSDVEEGGETVFPNAQGNISAVPWWNELS-------------ECGKTGLSIKPKMGDALLFWSMKPDAA-----LDPSSLHGGCPVIKGNKWSSTKWIRVN 728
            +E  E LQV+ Y  G  Y  H D                 +E        R  TVL YL++V  GGETVFP A         ++E+S              C K  L +KP+ G A+ +++  PD       +D  SLHGGC V +G KW +  WI V+
Sbjct:  308 VELSEPLQVVRYGEGGHYHAHVDSGPVYPETICSHTKLVANESVPFETSCRYMTVLFYLNNVTGGGETVFPVADNRT-----YDEMSLIQDDVDLRDTRRHCDKGNLRVKPQQGTAVFWYNYLPDGQGWVGDVDDYSLHGGCLVTRGTKWIANNWINVD 461          
The following BLAST results are available for this feature:
BLAST of CX078276 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
P4HA2_HUMAN6.697e-1732.39Prolyl 4-hydroxylase subunit alpha-2 OS=Homo sapie... [more]
P4H_MIMIV2.016e-1329.38Putative prolyl 4-hydroxylase OS=Acanthamoeba poly... [more]
P4HA3_HUMAN3.439e-1335.77Prolyl 4-hydroxylase subunit alpha-3 OS=Homo sapie... [more]
P4HA3_RAT7.662e-1337.10Prolyl 4-hydroxylase subunit alpha-3 OS=Rattus nor... [more]
P4HA3_MOUSE1.001e-1237.10Prolyl 4-hydroxylase subunit alpha-3 OS=Mus muscul... [more]
P4HA3_BOVIN1.001e-1237.10Prolyl 4-hydroxylase subunit alpha-3 OS=Bos taurus... [more]
P4HTM_MOUSE6.486e-1232.08Transmembrane prolyl 4-hydroxylase OS=Mus musculus... [more]
P4HTM_HUMAN6.486e-1232.08Transmembrane prolyl 4-hydroxylase OS=Homo sapiens... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B05-D10-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078276 ID=CX078276; Name=CX078276; organism=Citrus sinensis; type=EST; length=879bp
TTTTTTTTTAAATAATAAAAGAACCATATGCCATATTAAACAAACACAAA
ATGTCGATTTTACATCAAAGCACACATTTAGCTCAACAGCAACTAAAATG
TCCTAAATCTTTTGACACCTGGAATACTTGTAAATTTCCAAAGTTTTATT
CTATGTGGGCGGCAATACGTGAGGGCTCTCAACTTAATAAAACAAAAATA
AGTTAGCAGGGGCAGAAGGACGTCATCTTTTTAATAATTGAAGCCCAATT
CTCGTTGGAACTTTTGCTGAGACTTTACAAATTTGCTTCAATGATGTGAG
AACTCAGAAACTAAAAGCTTTAAGCCAGTAGTTCAAACCTTATACTCATT
CACACGTATCCATTTTGTAGATGACCACTTATTGCCTTTAATCACAGGGC
AACCTCCATGCAAACTAGAAGGATCTAAAGCGGCATCGGGCTTCATGCTC
CAGAAAAGCAATGCATCACCCATTTTTGGTTTAATAGAAAGTCCTGTCTT
TCCACATTCAGATAACTCATTCCACCAAGGCACAGCACTGATGTTCCCTT
GGGCATTAGGAAAGACTGTCTCACCTCCTTCTTCAACGTCTGAGAGGTAC
ATTAGCACCGTAGCCATGCGTTGCCCCCCATTCTTGGTGTTGAACTCATC
CATGAAATAGTCAAAGTGAGGCTCATATTTTTGTCCAGCTTCATAATGGA
GAACTTGAAGTCCTTCTCCATTCTCTAAAGGCAAGAAAGTGAAATCTGCA
ATCCTTTTCTCAATATCTCTAATAATTTTGTCTCGTCCTCTAGCAAGAAA
TGTTCCAGAACTTGTCCGAACCCTGCTATCTTTGCTCTTGCCAGTATCAC
TATCAACAACAGTCGACTTTCTCATATGA
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