CX078273

Overview
NameCX078273
Unique NameCX078273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length811
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH064_ARATH (Transcription factor bHLH64 OS=Arabidopsis thaliana GN=BHLH64 PE=2 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.078e-18
Identity = 44/61 (72.13%), Postives = 52/61 (85.25%), Query Frame = -3
Query:  405 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNL 587
            +ARREKIS++MK LQD+VPGCNKV GKA +LDEIINY+Q LQRQVEFLSMKL  +N  + L
Sbjct:  201 RARREKISKKMKYLQDIVPGCNKVTGKAGMLDEIINYVQCLQRQVEFLSMKLAVLNPELEL 261          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH048_ARATH (Transcription factor bHLH48 OS=Arabidopsis thaliana GN=BHLH48 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.685e-17
Identity = 42/60 (70.00%), Postives = 54/60 (90.00%), Query Frame = -3
Query:  408 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMN 587
            +ARREKI+ RMK+LQ+LVPGC+K+ G ALVLDEIIN++Q+LQRQVE LSM+L AVN R++
Sbjct:  201 RARREKINARMKLLQELVPGCDKIQGTALVLDEIINHVQTLQRQVEMLSMRLAAVNPRID 260          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH137_ARATH (Transcription factor bHLH137 OS=Arabidopsis thaliana GN=BHLH137 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.712e-16
Identity = 41/56 (73.21%), Postives = 51/56 (91.07%), Query Frame = -3
Query:  420 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVN 587
            + RREKISERM+ LQ+LVPGC+KV GKAL+LDEIINY+Q+LQ QVEFLSMKL +++
Sbjct:  152 RVRREKISERMRTLQNLVPGCDKVTGKALMLDEIINYVQTLQTQVEFLSMKLTSIS 207          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BEE3_ARATH (Transcription factor BEE 3 OS=Arabidopsis thaliana GN=BEE3 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.395e-15
Identity = 39/57 (68.42%), Postives = 47/57 (82.46%), Query Frame = -3
Query:  417 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 587
            + RR KI+ER+K LQD+VPGC K +G A +LDEIINY+QSLQ QVEFLSMKL A +S
Sbjct:  163 RVRRGKINERLKCLQDIVPGCYKTMGMATMLDEIINYVQSLQNQVEFLSMKLTAASS 219          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BEE1_ARATH (Transcription factor BEE 1 OS=Arabidopsis thaliana GN=BEE1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.093e-14
Identity = 38/57 (66.67%), Postives = 47/57 (82.46%), Query Frame = -3
Query:  417 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNS 587
            + RR KI+ER++ LQD+VPGC K +G A +LDEIINY+QSLQ QVEFLSMKL A +S
Sbjct:  161 RVRRGKINERLRCLQDMVPGCYKAMGMATMLDEIINYVQSLQNQVEFLSMKLTAASS 217          
BLAST of CX078273 vs. ExPASy Swiss-Prot
Match: BH075_ARATH (Transcription factor bHLH75 OS=Arabidopsis thaliana GN=BHLH75 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 6.089e-14
Identity = 37/61 (60.66%), Postives = 50/61 (81.97%), Query Frame = -3
Query:  405 QARREKISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQRQVEFLSMKLEAVNSRMNL 587
            + RREKI+ER+K LQDLVPGC K +G A++LD II+Y++SLQ Q+EFLSMKL A ++  +L
Sbjct:  120 RVRREKINERLKCLQDLVPGCYKAMGMAVMLDVIIDYVRSLQNQIEFLSMKLSAASACYDL 180          
The following BLAST results are available for this feature:
BLAST of CX078273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 16
Match NameE-valueIdentityDescription
BH064_ARATH9.078e-1872.13Transcription factor bHLH64 OS=Arabidopsis thalian... [more]
BH048_ARATH7.685e-1770.00Transcription factor bHLH48 OS=Arabidopsis thalian... [more]
BH137_ARATH1.712e-1673.21Transcription factor bHLH137 OS=Arabidopsis thalia... [more]
BEE3_ARATH9.395e-1568.42Transcription factor BEE 3 OS=Arabidopsis thaliana... [more]
BEE1_ARATH2.093e-1466.67Transcription factor BEE 1 OS=Arabidopsis thaliana... [more]
BH075_ARATH6.089e-1460.66Transcription factor bHLH75 OS=Arabidopsis thalian... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B03-D6-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078273 ID=CX078273; Name=CX078273; organism=Citrus sinensis; type=EST; length=811bp
TTTTTTTTTTTTTTCACTAGACAAATTTGTTTAAAAACTTAGAAATAGAG
CACAGAGTATCCAGTCAAATAATACACATGAAGATGAGATGTATTTTCTA
CAAATGATATAATAATACAAACTTAAGAAGGGCCTTGCTTGTAGGAAGAA
ACCAACAGCACCTTTCCCCAATGAGTAAGGATAACAAACAGAACTAAACT
TGCTGCTTAATCCACCGATTATGCAATGAGGTTCATTTAAAGCTACGTAG
CCCTTTCAAAACTTCCACCAACCTGCATATGCAGCCAATCCTGTTGCGAT
CCTTGAGCATATTCTCTTGCTGTTTGTGACCCGAATATCATTCCCGTGGC
ATCAAATGCCTGTTCACCAAGATCTTTTGGATGAAACCCTTCAATGGTAG
GAGTCAAGTTCATCCTTGAATTAACAGCTTCTAACTTCATTGACAGGAAC
TCAACCTGCCGTTGTAGTGACTGAATGTAATTAATTATTTCATCGAGAAC
AAGAGCTTTTCCAATAACCTTATTGCATCCAGGGACCAGATCCTGCAGAA
TCTTCATCCTCTCGCTAATTTTTTCTCGTCTAGCCTGCCAAAACGATTAC
GCATATGTTATGCAGTATGTTTCATAATTGAATAAACTATGTAGCTGTAC
CATCTGTGTTTCAAAATAGAATAGCTGAAAAAAGAAAAGTAGTGTTCAAA
AAAATAAAATAAACAAAGAAGAGAACATTCAACAATGACGACATTTCATA
GGCCATAGCTGTCTATTAAAACTGTTTATTAACCACATGAAGCCTCATCT
TTTGTAATTGA
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