CX078269

Overview
NameCX078269
Unique NameCX078269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_LEPVR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Lepidium virginicum GN=ndhA PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 6.738e-77
Identity = 148/168 (88.10%), Postives = 156/168 (92.86%), Query Frame = -1
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +ESL+EVYG++W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN+ LFSIGPSIAVI+ILLSYSVIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   17 LESLKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_CRUWA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Crucihimalaya wallichii GN=ndhA PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 6.738e-77
Identity = 148/168 (88.10%), Postives = 156/168 (92.86%), Query Frame = -1
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +ESL+EVYG++W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN+ LFSIGPSIAVI+ILLSYSVIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   17 LESLKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ARATH (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Arabidopsis thaliana GN=ndhA PE=3 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 6.738e-77
Identity = 148/168 (88.10%), Postives = 156/168 (92.86%), Query Frame = -1
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +ESL+EVYG++W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN+ LFSIGPSIAVI+ILLSYSVIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   17 LESLKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNTPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_NASOF (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nasturtium officinale GN=ndhA PE=3 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.149e-76
Identity = 148/168 (88.10%), Postives = 155/168 (92.26%), Query Frame = -1
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +ESL+EVYG++W+  PI   VL I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN  LFSIGPSIAVI+ILLSYSVIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   17 LESLKEVYGLIWIFVPIFSLVLGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNPPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_POPTR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus trichocarpa GN=ndhA PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.501e-76
Identity = 144/168 (85.71%), Postives = 155/168 (92.26%), Query Frame = -1
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            ++SL EVYGI+W+L PI   VL ITIG+LVIVWLEREISAGIQQRIGPEYA P G+LQALADGTKLLFKENL PSRG++ LFSIGPSIAVI+ LLSYSVIPF Y+ VLADLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   17 LKSLNEVYGIIWMLVPILTLVLGITIGILVIVWLEREISAGIQQRIGPEYAGPFGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISTLLSYSVIPFGYHFVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_POPAL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus alba GN=ndhA PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.501e-76
Identity = 144/168 (85.71%), Postives = 155/168 (92.26%), Query Frame = -1
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            ++SL EVYGI+W+L PI   VL ITIG+LVIVWLEREISAGIQQRIGPEYA P G+LQALADGTKLLFKENL PSRG++ LFSIGPSIAVI+ LLSYSVIPF Y+ VLADLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   17 LKSLNEVYGIIWMLVPILTLVLGITIGILVIVWLEREISAGIQQRIGPEYAGPFGVLQALADGTKLLFKENLFPSRGDTRLFSIGPSIAVISTLLSYSVIPFGYHFVLADLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_DAUCA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Daucus carota GN=ndhA PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.501e-76
Identity = 146/170 (85.88%), Postives = 157/170 (92.35%), Query Frame = -1
Query:  300 FPIESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 809
            F +ESL+EVY I+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAV +ILLSY VIPF Y LVLAD++IG+FLWIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   15 FRLESLKEVYDIIWMLVPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVTSILLSYLVIPFGYRLVLADVSIGVFLWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_BARVE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Barbarea verna GN=ndhA PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.501e-76
Identity = 147/168 (87.50%), Postives = 155/168 (92.26%), Query Frame = -1
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +ESL+EVYG++W+  PI   +L I  GVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENL PSRGN  LFSIGPSIAVI+ILLSYSVIPFS +LVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   17 LESLKEVYGLIWIFVPIFSLILGIITGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLRPSRGNPPLFSIGPSIAVISILLSYSVIPFSNHLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_TOBAC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nicotiana tabacum GN=ndhA PE=3 SV=3)

HSP 1 Score: 285.804 bits (730), Expect = 1.960e-76
Identity = 148/178 (83.15%), Postives = 161/178 (90.45%), Query Frame = -1
Query:  270 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRVIR*NLSFS 803
            +ESL+EVYGI+W+L PI   VL ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQALADGTKLL KENL+PS G++ LFSIGPSIAVI+I LSYSVIPF  +LVLADL+IG+F WIAISSIAP+GLLMSGYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISLRVIR + S S
Sbjct:   17 LESLKEVYGIIWMLFPILTLVLGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLLKENLIPSTGDTRLFSIGPSIAVISIFLSYSVIPFGDHLVLADLSIGVFFWIAISSIAPVGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLRVIRLSNSLS 194          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_VITVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Vitis vinifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 285.419 bits (729), Expect = 2.560e-76
Identity = 146/168 (86.90%), Postives = 156/168 (92.86%), Query Frame = -1
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E L+EVYGI+W+L PI   VL ITIGVL IVWLEREISAGIQQRIGPEYA PLGILQALADGTKLLFKENLLPSRG++ LFSIGPSIAVI+ILLSY +IPF  NLVL+DLNIG+FLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   17 LEYLKEVYGIIWMLVPIFTPVLGITIGVLAIVWLEREISAGIQQRIGPEYAGPLGILQALADGTKLLFKENLLPSRGDTRLFSIGPSIAVISILLSYLIIPFGSNLVLSDLNIGVFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 184          
The following BLAST results are available for this feature:
BLAST of CX078269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_LEPVR6.738e-7788.10NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CRUWA6.738e-7788.10NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ARATH6.738e-7788.10NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NASOF1.149e-7688.10NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_POPTR1.501e-7685.71NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_POPAL1.501e-7685.71NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_DAUCA1.501e-7685.88NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_BARVE1.501e-7687.50NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_TOBAC1.960e-7683.15NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_VITVI2.560e-7686.90NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078269 ID=CX078269; Name=CX078269; organism=Citrus sinensis; type=EST; length=818bp
AAATTCTATAGGGTTGGTCTTTTAAGCCCGCTTCAAGCTAGGATGATCAA
TCGACCTGTCTTGGGGTAAGGGCTTCCTCCACTTTTACTTTTGTTTACTT
ATCCTTAACGCTTGTACATAGGAAATGAGACTTAATCCACGTTTACTGCG
AATTTCGAAGGTGTTTTCTTTCACTCATATATAACTATCTAATTTCTTTT
ATTAACCTAAAGAGTCAATAAATGAATAAAAAAATGAGGATTTCTATTCA
AGTTCTTTTTTTTCTAGAACGAAAAGCTTAGGTTTTAGCGAATCACACGT
AGAGATATTGATAAAACACATAAAGTTAATGGTATTTCATAACTAATCGA
TTGAGCAGCAGCTCGCAGACCACCTAAAAAGGAATATTTATTATTTGATC
CATATCCTGACATAAGAAGTCCAATAGGGGCAATACTTGAAATGGCAATC
CATAAAAAAATACCGATATTGAGGTCAGCTAAAACAAGGTTATAACTAAA
AGGAATTACTGAATAACTTAGTAGAATTGCTATGACTGCTATAGATGGAC
CAATACTGAATAAACTACTATTTCCTCTAGATGGAAGAAGGTTTTCTTTG
AAAAGGAGTTTTGTCCCATCGGCTAAAGCTTGAAGAATTCCCAAAGGGCT
GGCGTATTCAGGCCCAATACGCTGTTGTATTCCTGCAGATATTTCTCTTT
CTAACCACACAATTACTAGGACACCGATTGTGATTGCCAATACATAAATC
GAAATAGGGGCAAGCACCCATAGGATCCCATAGACCTCTTGTAGGGATTC
AATCGGGAAAAGAATTGA
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