CX078269

Overview
NameCX078269
Unique NameCX078269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NUOH_HELPH (NADH-quinone oxidoreductase subunit H OS=Helicobacter pylori (strain HPAG1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 57/169 (33.73%), Postives = 96/169 (56.80%), Query Frame = -1
Query:  309 ISIYVLAITIGVLVIV-----------WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVL---------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 755
            +S Y++   I +L++V           ++ER++ A  Q+R+GP Y  P G+LQ  ADG KL  KE+++P   N  +F++ P IA+++  +S + IPF  N  L         +D+NIG   ++A+ +      +++G  SNNKYS +G  RA  Q +S+E+  TL +L+
Sbjct:    1 MSAYIIETLIKILILVAVFSALGGFATYIERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGANKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGAAGIYAPILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILA 169          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NUOH_HELPG (NADH-quinone oxidoreductase subunit H OS=Helicobacter pylori (strain G27) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 57/169 (33.73%), Postives = 96/169 (56.80%), Query Frame = -1
Query:  309 ISIYVLAITIGVLVIV-----------WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVL---------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 755
            +S Y++   I +L++V           ++ER++ A  Q+R+GP Y  P G+LQ  ADG KL  KE+++P   N  +F++ P IA+++  +S + IPF  N  L         +D+NIG   ++A+ +      +++G  SNNKYS +G  RA  Q +S+E+  TL +L+
Sbjct:    1 MSAYIIETLIKILILVAVFSALGGFATYIERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGANKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGAAGIYAPILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILA 169          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NUOH_HELP2 (NADH-quinone oxidoreductase subunit H OS=Helicobacter pylori (strain P12) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 57/169 (33.73%), Postives = 96/169 (56.80%), Query Frame = -1
Query:  309 ISIYVLAITIGVLVIV-----------WLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVL---------ADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLS 755
            +S Y++   I +L++V           ++ER++ A  Q+R+GP Y  P G+LQ  ADG KL  KE+++P   N  +F++ P IA+++  +S + IPF  N  L         +D+NIG   ++A+ +      +++G  SNNKYS +G  RA  Q +S+E+  TL +L+
Sbjct:    1 MSAYIIETLIKILILVAVFSALGGFATYIERKVLAYFQRRLGPCYVGPFGLLQVAADGIKLFTKEDIIPQGANKFIFTLAPIIAMVSAFVSMAPIPFFPNFTLFGYEIKPLISDINIGFLFFLAVGAAGIYAPILAGLASNNKYSLIGSARATIQLLSFEVVSTLTILA 169          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NUOH_FRAAA (NADH-quinone oxidoreductase subunit H OS=Frankia alni (strain ACN14a) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 58/165 (35.15%), Postives = 100/165 (60.61%), Query Frame = -1
Query:  306 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFS---------YNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 773
            L +L  ++++   + + +  IV+ ER++ A +QQR+GP    P G LQ+LADG KL+ KE+L+P+  +  +F + P ++ +   L+++VIPF            L LADL + +   +A +S+   GL++SG+ S + Y  LG LR+AAQ ISYE+ + L  +++
Sbjct:   28 LILLKGVAVFAFLLLMTLFSIVF-ERKVVAKMQQRVGPNRHGPKGWLQSLADGAKLMLKEDLIPALADKPIFILAPILSAVPAFLAFAVIPFGPEVSIFGERTTLQLADLPVSVLYMLAAASLGVYGLILSGWSSGSTYPLLGSLRSAAQIISYEVAMGLSFVAV 191          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NUOH_AZOVD (NADH-quinone oxidoreductase subunit H OS=Azotobacter vinelandii (strain DJ / ATCC BAA-1303) GN=nuoH PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 55/157 (35.03%), Postives = 98/157 (62.42%), Query Frame = -1
Query:  306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776
            ++ +L  I I ++ +  G L + ++ER +    Q R GP    P G+ Q  AD  K+ FKE+  P   +  +F++ P +A+ A+L++++V+P +    +ADLNIG+  + A++ +A   +L +G+ SNNK++ LG LRA+AQ+ISYE+ + L ++ I
Sbjct:   12 VVAILKAIVILLVVVVCGAL-LSFIERRLLGLWQDRYGPNRVGPFGMFQLGADMLKMFFKEDWTPPFADRLIFTLAPIVAMSALLMAFAVVPVTPTWGVADLNIGLLFFFAMAGLAVYAVLFAGWSSNNKFALLGSLRASAQTISYEVFMALALMGI 167          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1M_VARJO (NADH-ubiquinone oxidoreductase chain 1 OS=Varanus jobiensis GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 61/157 (38.85%), Postives = 96/157 (61.15%), Query Frame = -1
Query:  306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776
            ++ ++ P++ Y++ I I V  +   ER+I   +Q R GP    P G+LQ +ADG KL  KE + P   +  L  + P +A+   +L ++ IP  Y L  A+LN+G    +AISS+A   +L +G+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI
Sbjct:    3 LITIINPLT-YIVPILIAVAFLTLTERKILGYMQLRKGPNITGPYGLLQPIADGLKLFIKEPVRPLNTSPILLILSPVLALTMAMLIWTPIPMPYTL--ANLNLGFLSILAISSMAVNSILWAGWASNSKYALIGSLRAVAQTISYEVTLGIILLSI 156          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1M_SQUAC (NADH-ubiquinone oxidoreductase chain 1 OS=Squalus acanthias GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 58/157 (36.94%), Postives = 98/157 (62.42%), Query Frame = -1
Query:  306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776
            +L+++ P++ Y++ I +    +  +ER+I   +Q R GP    P G+LQ +ADG KL  KE + PS  +  LF   P++A+   LL +  +P  + ++  +LN+G+   +A+SS+    +L SG+ SN+KY+ +G LRA AQ+ISYE+ L L +LS+
Sbjct:    6 LLYLINPLA-YIVPILLATAFLTLVERKILGYMQFRKGPNIVGPYGLLQPIADGVKLFIKEPVRPSTSSPFLFLATPTLALTLALLMWMPLPLPHAII--NLNLGLLFILAVSSLTVYTILGSGWASNSKYALMGALRAVAQTISYEVSLGLILLSM 159          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1M_SHEEP (NADH-ubiquinone oxidoreductase chain 1 OS=Ovis aries GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 55/148 (37.16%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  300 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 743
            ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P+  + S+F + P +A+   L  +  +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 IIPILLAVAFLTLVERKVLGYMQFRKGPNVVGPYGLLQPIADAIKLFIKEPLRPATSSISMFILAPILALTLALTMWIPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1M_PIG (NADH-ubiquinone oxidoreductase chain 1 OS=Sus scrofa GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 56/148 (37.84%), Postives = 91/148 (61.49%), Query Frame = -1
Query:  300 VLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 743
            ++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P+  + S+F I P +A+   L  +  +P  Y L+  ++N+G+   +A+SS+A   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LS+ L
Sbjct:   10 IIPILLAVAFLTLVERKVLGYMQLRKGPNVVGPYGLLQPIADALKLFTKEPLRPATSSISMFIIAPILALSLALTMWVPLPMPYPLI--NMNLGVLFMLAMSSLAVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSVLL 155          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1M_MACRO (NADH-ubiquinone oxidoreductase chain 1 OS=Macropus robustus GN=MT-ND1 PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.474e-23
Identity = 56/150 (37.33%), Postives = 92/150 (61.33%), Query Frame = -1
Query:  300 IYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 749
            +Y++ I + V  +  +ER++   +Q R GP    P G+LQ +AD  KL  KE L P   + S+F I P +A+   L  ++ +P  + L+  DLN+G+   +++S ++   +L SG+ SN+KY+ +G LRA AQ+ISYE+ L + +LSI L
Sbjct:    8 LYIVPILLAVAFLTLVERKVLGYMQFRKGPNIVGPYGLLQPIADAVKLFTKEPLRPLTSSVSMFIIAPILALTLALTIWTPLPMPHALI--DLNLGLLFILSLSGLSVYSILWSGWASNSKYALIGALRAVAQTISYEVTLAIILLSIML 155          
The following BLAST results are available for this feature:
BLAST of CX078269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_HELPH1.474e-2333.73NADH-quinone oxidoreductase subunit H OS=Helicobac... [more]
NUOH_HELPG1.474e-2333.73NADH-quinone oxidoreductase subunit H OS=Helicobac... [more]
NUOH_HELP21.474e-2333.73NADH-quinone oxidoreductase subunit H OS=Helicobac... [more]
NUOH_FRAAA1.474e-2335.15NADH-quinone oxidoreductase subunit H OS=Frankia a... [more]
NUOH_AZOVD1.474e-2335.03NADH-quinone oxidoreductase subunit H OS=Azotobact... [more]
NU1M_VARJO1.474e-2338.85NADH-ubiquinone oxidoreductase chain 1 OS=Varanus ... [more]
NU1M_SQUAC1.474e-2336.94NADH-ubiquinone oxidoreductase chain 1 OS=Squalus ... [more]
NU1M_SHEEP1.474e-2337.16NADH-ubiquinone oxidoreductase chain 1 OS=Ovis ari... [more]
NU1M_PIG1.474e-2337.84NADH-ubiquinone oxidoreductase chain 1 OS=Sus scro... [more]
NU1M_MACRO1.474e-2337.33NADH-ubiquinone oxidoreductase chain 1 OS=Macropus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078269 ID=CX078269; Name=CX078269; organism=Citrus sinensis; type=EST; length=818bp
AAATTCTATAGGGTTGGTCTTTTAAGCCCGCTTCAAGCTAGGATGATCAA
TCGACCTGTCTTGGGGTAAGGGCTTCCTCCACTTTTACTTTTGTTTACTT
ATCCTTAACGCTTGTACATAGGAAATGAGACTTAATCCACGTTTACTGCG
AATTTCGAAGGTGTTTTCTTTCACTCATATATAACTATCTAATTTCTTTT
ATTAACCTAAAGAGTCAATAAATGAATAAAAAAATGAGGATTTCTATTCA
AGTTCTTTTTTTTCTAGAACGAAAAGCTTAGGTTTTAGCGAATCACACGT
AGAGATATTGATAAAACACATAAAGTTAATGGTATTTCATAACTAATCGA
TTGAGCAGCAGCTCGCAGACCACCTAAAAAGGAATATTTATTATTTGATC
CATATCCTGACATAAGAAGTCCAATAGGGGCAATACTTGAAATGGCAATC
CATAAAAAAATACCGATATTGAGGTCAGCTAAAACAAGGTTATAACTAAA
AGGAATTACTGAATAACTTAGTAGAATTGCTATGACTGCTATAGATGGAC
CAATACTGAATAAACTACTATTTCCTCTAGATGGAAGAAGGTTTTCTTTG
AAAAGGAGTTTTGTCCCATCGGCTAAAGCTTGAAGAATTCCCAAAGGGCT
GGCGTATTCAGGCCCAATACGCTGTTGTATTCCTGCAGATATTTCTCTTT
CTAACCACACAATTACTAGGACACCGATTGTGATTGCCAATACATAAATC
GAAATAGGGGCAAGCACCCATAGGATCCCATAGACCTCTTGTAGGGATTC
AATCGGGAAAAGAATTGA
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