CX078269

Overview
NameCX078269
Unique NameCX078269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_AETGR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Aethionema grandiflora GN=ndhA PE=3 SV=1)

HSP 1 Score: 269.24 bits (687), Expect = 1.899e-71
Identity = 140/168 (83.33%), Postives = 150/168 (89.29%), Query Frame = -1 
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +ES +EVYG++W   PI   VL I  GVLV+VWLEREISA IQQRIGPEYA  LGILQALADG KLLFKENL PS GN++LFSIGPSIAVI+ILLSYSVIPFS +LVLAD NIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLC+LSISL
Sbjct:   17 LESFKEVYGLIWEFLPIFSLVLGILTGVLVLVWLEREISARIQQRIGPEYAGALGILQALADGIKLLFKENLRPSIGNTTLFSIGPSIAVISILLSYSVIPFSNHLVLADFNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCLLSISL 184
[Close]
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_AMBTC (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Amborella trichopoda GN=ndhA PE=3 SV=1)

HSP 1 Score: 267.314 bits (682), Expect = 7.215e-71
Identity = 137/168 (81.55%), Postives = 150/168 (89.29%), Query Frame = -1 
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +ES +EVYG++W+  PI   V  ITIGVLVIVWLEREISAGIQQRIGPEYA PLGILQA+ADGTKLLFKE+LLPSRG+  LFSIGPS+ VI+ILLS+ VIPF Y LVLADL+IG+ LWIAISSIAPIGLLMSGY SNNKYSF GGLRAAAQSISYEIPLTLCVLSISL
Sbjct:   17 LESSKEVYGLIWLFIPIFTPVSGITIGVLVIVWLEREISAGIQQRIGPEYAGPLGILQAIADGTKLLFKEDLLPSRGDIRLFSIGPSVVVISILLSHLVIPFGYRLVLADLSIGVSLWIAISSIAPIGLLMSGYASNNKYSFSGGLRAAAQSISYEIPLTLCVLSISL 184
[Close]
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSJ (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa subsp. japonica GN=ndhA PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 8.820e-69
Identity = 133/168 (79.17%), Postives = 150/168 (89.29%), Query Frame = -1 
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E L+EVYG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+  LFSIGPSIAVI+ILLS+ VIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   17 LELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa subsp. indica GN=ndhA PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 8.820e-69
Identity = 133/168 (79.17%), Postives = 150/168 (89.29%), Query Frame = -1 
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E L+EVYG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+  LFSIGPSIAVI+ILLS+ VIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   17 LELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ORYSA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza sativa GN=ndhA PE=2 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 8.820e-69
Identity = 133/168 (79.17%), Postives = 150/168 (89.29%), Query Frame = -1 
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E L+EVYG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+  LFSIGPSIAVI+ILLS+ VIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   17 LELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ORYNI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Oryza nivara GN=ndhA PE=2 SV=2)

HSP 1 Score: 260.381 bits (664), Expect = 8.820e-69
Identity = 133/168 (79.17%), Postives = 150/168 (89.29%), Query Frame = -1 
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E L+EVYG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+  LFSIGPSIAVI+ILLS+ VIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   17 LELLKEVYGLIWIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SACOF (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Saccharum officinarum GN=ndhA PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 5.717e-68
Identity = 131/168 (77.98%), Postives = 149/168 (88.69%), Query Frame = -1 
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E L+E+YG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG   LFSIGPSIAVI+ILLS+ VIP  Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   17 LELLKEIYGLIWIL-PILALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGEIPLFSIGPSIAVISILLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SACHY (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Saccharum hybrid GN=ndhA PE=2 SV=2)

HSP 1 Score: 257.684 bits (657), Expect = 5.717e-68
Identity = 131/168 (77.98%), Postives = 149/168 (88.69%), Query Frame = -1 
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E L+E+YG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG   LFSIGPSIAVI+ILLS+ VIP  Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   17 LELLKEIYGLIWIL-PILALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGEIPLFSIGPSIAVISILLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_WHEAT (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Triticum aestivum GN=ndhA PE=2 SV=2)

HSP 1 Score: 256.914 bits (655), Expect = 9.752e-68
Identity = 132/168 (78.57%), Postives = 151/168 (89.88%), Query Frame = -1 
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E L+EVYG++ +L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+ SLFSIGPSIAVI++LLS+ VIP  Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   17 LELLKEVYGLISIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDISLFSIGPSIAVISVLLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
[Close]
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_HORVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Hordeum vulgare GN=ndhA PE=2 SV=4)

HSP 1 Score: 256.914 bits (655), Expect = 9.752e-68
Identity = 132/168 (78.57%), Postives = 151/168 (89.88%), Query Frame = -1 
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E L+EVYG++ +L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLLFKE++LPSRG+ SLFSIGPSIAVI++LLS+ VIP  Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   17 LELLKEVYGLISIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLFKEDILPSRGDISLFSIGPSIAVISVLLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
The following BLAST results are available for this feature:
BLAST of CX078269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_AETGR1.899e-7183.33NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AMBTC7.215e-7181.55NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYSJ8.820e-6979.17NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYSI8.820e-6979.17NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYSA8.820e-6979.17NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ORYNI8.820e-6979.17NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SACOF5.717e-6877.98NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SACHY5.717e-6877.98NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_WHEAT9.752e-6878.57NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_HORVU9.752e-6878.57NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078269 ID=CX078269; Name=CX078269; organism=Citrus sinensis; type=EST; length=818bp
AAATTCTATAGGGTTGGTCTTTTAAGCCCGCTTCAAGCTAGGATGATCAA
TCGACCTGTCTTGGGGTAAGGGCTTCCTCCACTTTTACTTTTGTTTACTT
ATCCTTAACGCTTGTACATAGGAAATGAGACTTAATCCACGTTTACTGCG
AATTTCGAAGGTGTTTTCTTTCACTCATATATAACTATCTAATTTCTTTT
ATTAACCTAAAGAGTCAATAAATGAATAAAAAAATGAGGATTTCTATTCA
AGTTCTTTTTTTTCTAGAACGAAAAGCTTAGGTTTTAGCGAATCACACGT
AGAGATATTGATAAAACACATAAAGTTAATGGTATTTCATAACTAATCGA
TTGAGCAGCAGCTCGCAGACCACCTAAAAAGGAATATTTATTATTTGATC
CATATCCTGACATAAGAAGTCCAATAGGGGCAATACTTGAAATGGCAATC
CATAAAAAAATACCGATATTGAGGTCAGCTAAAACAAGGTTATAACTAAA
AGGAATTACTGAATAACTTAGTAGAATTGCTATGACTGCTATAGATGGAC
CAATACTGAATAAACTACTATTTCCTCTAGATGGAAGAAGGTTTTCTTTG
AAAAGGAGTTTTGTCCCATCGGCTAAAGCTTGAAGAATTCCCAAAGGGCT
GGCGTATTCAGGCCCAATACGCTGTTGTATTCCTGCAGATATTTCTCTTT
CTAACCACACAATTACTAGGACACCGATTGTGATTGCCAATACATAAATC
GAAATAGGGGCAAGCACCCATAGGATCCCATAGACCTCTTGTAGGGATTC
AATCGGGAAAAGAATTGA
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