CX078269

Overview
NameCX078269
Unique NameCX078269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_MAIZE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Zea mays GN=ndhA PE=2 SV=3)

HSP 1 Score: 256.144 bits (653), Expect = 1.663e-67
Identity = 130/168 (77.38%), Postives = 148/168 (88.10%), Query Frame = -1
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E  +E+YG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG+  LFSIGPSIAVI+ILLS+ VIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   17 LELFKEIYGLIWIL-PIFALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SORBI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor GN=ndhA PE=3 SV=1)

HSP 1 Score: 253.832 bits (647), Expect = 8.255e-67
Identity = 129/167 (77.25%), Postives = 146/167 (87.43%), Query Frame = -1
Query:  300 ESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 800
            E L+E+YG++W+L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG   LFSIGPSIAVI++LLS+ VIP  Y  VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSF GGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   18 ELLKEIYGLIWIL-PILALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGEIPLFSIGPSIAVISVLLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISL 183          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_AGRST (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 253.062 bits (645), Expect = 1.408e-66
Identity = 131/168 (77.98%), Postives = 149/168 (88.69%), Query Frame = -1
Query:  300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            +E L+EVYG++ +L PI   +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG+  LFSIGPSIAVI+ILLS+ VIP  Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL
Sbjct:   17 LELLKEVYGLISIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ANTFO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Anthoceros formosae GN=ndhA PE=2 SV=1)

HSP 1 Score: 250.751 bits (639), Expect = 6.989e-66
Identity = 121/164 (73.78%), Postives = 143/164 (87.20%), Query Frame = -1
Query:  300 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 791
            ++ +  LW+ A I I V  + IGVLVIVWLER+ISAGIQQRIGPEYA PLGI+QALADGTKLL KE+++PSRG++ LFSIGP+I VI +LLSY VIPF +N++LADLNIG+F WIA+SSIAP+GL M+GYGSNNKYSFLGGLRA AQ+ISYEIPL LCVLSISL
Sbjct:   22 KDFFSFLWITASILILVSGVVIGVLVIVWLERKISAGIQQRIGPEYAGPLGIIQALADGTKLLLKEDIIPSRGDALLFSIGPAIVVIPVLLSYLVIPFGHNIILADLNIGVFFWIAVSSIAPLGLFMAGYGSNNKYSFLGGLRAVAQAISYEIPLALCVLSISL 185          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Physcomitrella patens GN=ndhA PE=3 SV=1)

HSP 1 Score: 247.284 bits (630), Expect = 7.727e-65
Identity = 119/166 (71.69%), Postives = 145/166 (87.35%), Query Frame = -1
Query:  294 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 791
            ++ +  +W+   I I +L ITIGVLV+VWLER+ISAGIQQRIGPEYA PLGI+QALADG KLL KE+++PS+G++ LF+IGP+I VI + LSY VIPF +N++LADLNIG+F WIAISSI P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL++
Sbjct:   22 KDFFNFIWIAFSILILLLTITIGVLVLVWLERKISAGIQQRIGPEYAGPLGIIQALADGFKLLLKEDIIPSKGDNWLFNIGPAIVVIPVFLSYLVIPFGHNIILADLNIGVFFWIAISSIVPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLQL 187          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_CYCTA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cycas taitungensis GN=ndhA PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 7.232e-63
Identity = 121/173 (69.94%), Postives = 147/173 (84.97%), Query Frame = -1
Query:  300 SILFPIESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 818
            ++ F +  ++E++G++W+   I I +L + IG+LVIVWLER+ISAGIQQRIGPEYA PLGILQALADG KLL KE+++PSRG+  LFSIGP+I VI IL SY VIPF  ++VLADL+IG+F  IA+SSIAP+GLLM+GYGSNNKYSF GGLRAAAQSISYEIPL LCVLSISL
Sbjct:   14 NLSFVLGFIKEIFGLIWIRIYILIPILGVLIGLLVIVWLERKISAGIQQRIGPEYAGPLGILQALADGIKLLLKEDIIPSRGDLWLFSIGPAIVVIPILSSYLVIPFGRHIVLADLSIGVFFRIAVSSIAPLGLLMAGYGSNNKYSFSGGLRAAAQSISYEIPLALCVLSISL 186          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ANGEV (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Angiopteris evecta GN=ndhA PE=3 SV=1)

HSP 1 Score: 239.58 bits (610), Expect = 1.611e-62
Identity = 118/173 (68.21%), Postives = 145/173 (83.82%), Query Frame = -1
Query:  300 ILFPIESL-QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 815
            ILF    L +E   ++W++  I   ++ +T+GVLVIVWLER+ISAGIQQRIGPEYA PLGI+QALADG KLL KE+++P+RG+  LF++GP+I VI + LSY VIPF  +++LADL IG+F WIA+SSIAP+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:   14 ILFSESELSKEFLELIWIIVSILTTIVGVTLGVLVIVWLERKISAGIQQRIGPEYAGPLGIIQALADGIKLLLKEDVIPARGDIWLFNVGPAIVVIPVFLSYLVIPFGKHIILADLGIGVFFWIAVSSIAPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Huperzia lucidula GN=ndhA PE=3 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 7.996e-62
Identity = 108/163 (66.26%), Postives = 140/163 (85.89%), Query Frame = -1
Query:  303 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSIS 791
            ++++G +W++ PI  Y L +TIG+ VIVWLER+ISAG+QQRIGPE+A PLGI+QALADG KLL KE+++PSRG+S LF++GP + V+ + LSY VIP  + ++LADL+IG+F WIA+SS+AP+GLL +GYGSNNKYS LGGLRAAAQSISYEIPL LCVLS+S
Sbjct:   22 KDLFGFIWIITPILTYTLGVTIGISVIVWLERKISAGVQQRIGPEHAGPLGIIQALADGAKLLSKEDIIPSRGDSFLFNVGPVMVVVPVFLSYLVIPLGHGIILADLDIGVFFWIAVSSVAPLGLLTAGYGSNNKYSSLGGLRAAAQSISYEIPLALCVLSVS 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_CHLAT (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chlorokybus atmophyticus GN=ndhA PE=3 SV=2)

HSP 1 Score: 233.032 bits (593), Expect = 1.508e-60
Identity = 108/164 (65.85%), Postives = 142/164 (86.59%), Query Frame = -1
Query:  300 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 791
            +++   LW+  PI + ++  TIGVLVIVWLER+ISAG+QQRIGPE+A PLG+LQ LADG KL+FKE+++PS+ +  LF++GP++ VI + L+Y V+PF ++LV+AD+++G+F WIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQ+ISYEIPL+LCVL+I L
Sbjct:   22 KDISAALWIPLPILVVIVGATIGVLVIVWLERKISAGVQQRIGPEFAGPLGVLQPLADGLKLVFKEDIIPSKADIWLFTLGPALVVIPVFLAYLVVPFGHDLVVADISLGVFFWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQAISYEIPLSLCVLAICL 185          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PSINU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Psilotum nudum GN=ndhA PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.359e-60
Identity = 110/164 (67.07%), Postives = 138/164 (84.15%), Query Frame = -1
Query:  300 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 791
            ++++ ILW +  I   +L +T+GVLVIVWLER+ISAG+QQR+GPEY  PLGILQ L DG KLL KE+++P++GN+ LF++GP+I VI + LSY VIPF   ++L+DL IG+F WIA+SSI P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:   23 KDLFFILWTVLSILTLLLGVTMGVLVIVWLERKISAGMQQRMGPEYTGPLGILQTLMDGIKLLLKEDIVPAKGNTWLFNLGPAIVVIPVFLSYLVIPFGQKMILSDLGIGVFFWIAVSSIVPLGLLMTGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186          
The following BLAST results are available for this feature:
BLAST of CX078269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_MAIZE1.663e-6777.38NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SORBI8.255e-6777.25NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AGRST1.408e-6677.98NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ANTFO6.989e-6673.78NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PHYPA7.727e-6571.69NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CYCTA7.232e-6369.94NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ANGEV1.611e-6268.21NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_HUPLU7.996e-6266.26NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CHLAT1.508e-6065.85NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PSINU3.359e-6067.07NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078269 ID=CX078269; Name=CX078269; organism=Citrus sinensis; type=EST; length=818bp
AAATTCTATAGGGTTGGTCTTTTAAGCCCGCTTCAAGCTAGGATGATCAA
TCGACCTGTCTTGGGGTAAGGGCTTCCTCCACTTTTACTTTTGTTTACTT
ATCCTTAACGCTTGTACATAGGAAATGAGACTTAATCCACGTTTACTGCG
AATTTCGAAGGTGTTTTCTTTCACTCATATATAACTATCTAATTTCTTTT
ATTAACCTAAAGAGTCAATAAATGAATAAAAAAATGAGGATTTCTATTCA
AGTTCTTTTTTTTCTAGAACGAAAAGCTTAGGTTTTAGCGAATCACACGT
AGAGATATTGATAAAACACATAAAGTTAATGGTATTTCATAACTAATCGA
TTGAGCAGCAGCTCGCAGACCACCTAAAAAGGAATATTTATTATTTGATC
CATATCCTGACATAAGAAGTCCAATAGGGGCAATACTTGAAATGGCAATC
CATAAAAAAATACCGATATTGAGGTCAGCTAAAACAAGGTTATAACTAAA
AGGAATTACTGAATAACTTAGTAGAATTGCTATGACTGCTATAGATGGAC
CAATACTGAATAAACTACTATTTCCTCTAGATGGAAGAAGGTTTTCTTTG
AAAAGGAGTTTTGTCCCATCGGCTAAAGCTTGAAGAATTCCCAAAGGGCT
GGCGTATTCAGGCCCAATACGCTGTTGTATTCCTGCAGATATTTCTCTTT
CTAACCACACAATTACTAGGACACCGATTGTGATTGCCAATACATAAATC
GAAATAGGGGCAAGCACCCATAGGATCCCATAGACCTCTTGTAGGGATTC
AATCGGGAAAAGAATTGA
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