CX078269
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_MAIZE (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Zea mays GN=ndhA PE=2 SV=3) HSP 1 Score: 256.144 bits (653), Expect = 1.663e-67 Identity = 130/168 (77.38%), Postives = 148/168 (88.10%), Query Frame = -1 Query: 300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803 +E +E+YG++W+L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG+ LFSIGPSIAVI+ILLS+ VIP Y VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 17 LELFKEIYGLIWIL-PIFALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SORBI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Sorghum bicolor GN=ndhA PE=3 SV=1) HSP 1 Score: 253.832 bits (647), Expect = 8.255e-67 Identity = 129/167 (77.25%), Postives = 146/167 (87.43%), Query Frame = -1 Query: 300 ESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 800 E L+E+YG++W+L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG LFSIGPSIAVI++LLS+ VIP Y VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSF GGLRAAAQSISYEIPLT CVL+ISL Sbjct: 18 ELLKEIYGLIWIL-PILALLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGEIPLFSIGPSIAVISVLLSFLVIPLGYRFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFSGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_AGRST (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera GN=ndhA PE=3 SV=1) HSP 1 Score: 253.062 bits (645), Expect = 1.408e-66 Identity = 131/168 (77.98%), Postives = 149/168 (88.69%), Query Frame = -1 Query: 300 IESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803 +E L+EVYG++ +L PI +L ITI VLVIVWLEREISA IQQRIGPEYA PLG+LQA+ADGTKLL KE++LPSRG+ LFSIGPSIAVI+ILLS+ VIP Y+ VLADL+IG+FLWIAISSIAPIGLLM+GY SNNKYSFLGGLRAAAQSISYEIPLT CVL+ISL Sbjct: 17 LELLKEVYGLISIL-PILTLLLGITIEVLVIVWLEREISASIQQRIGPEYAGPLGLLQAIADGTKLLLKEDILPSRGDIPLFSIGPSIAVISILLSFLVIPLGYHFVLADLSIGVFLWIAISSIAPIGLLMAGYSSNNKYSFLGGLRAAAQSISYEIPLTFCVLAISL 183
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ANTFO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Anthoceros formosae GN=ndhA PE=2 SV=1) HSP 1 Score: 250.751 bits (639), Expect = 6.989e-66 Identity = 121/164 (73.78%), Postives = 143/164 (87.20%), Query Frame = -1 Query: 300 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 791 ++ + LW+ A I I V + IGVLVIVWLER+ISAGIQQRIGPEYA PLGI+QALADGTKLL KE+++PSRG++ LFSIGP+I VI +LLSY VIPF +N++LADLNIG+F WIA+SSIAP+GL M+GYGSNNKYSFLGGLRA AQ+ISYEIPL LCVLSISL Sbjct: 22 KDFFSFLWITASILILVSGVVIGVLVIVWLERKISAGIQQRIGPEYAGPLGIIQALADGTKLLLKEDIIPSRGDALLFSIGPAIVVIPVLLSYLVIPFGHNIILADLNIGVFFWIAVSSIAPLGLFMAGYGSNNKYSFLGGLRAVAQAISYEIPLALCVLSISL 185
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Physcomitrella patens GN=ndhA PE=3 SV=1) HSP 1 Score: 247.284 bits (630), Expect = 7.727e-65 Identity = 119/166 (71.69%), Postives = 145/166 (87.35%), Query Frame = -1 Query: 294 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISLRV 791 ++ + +W+ I I +L ITIGVLV+VWLER+ISAGIQQRIGPEYA PLGI+QALADG KLL KE+++PS+G++ LF+IGP+I VI + LSY VIPF +N++LADLNIG+F WIAISSI P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL++ Sbjct: 22 KDFFNFIWIAFSILILLLTITIGVLVLVWLERKISAGIQQRIGPEYAGPLGIIQALADGFKLLLKEDIIPSKGDNWLFNIGPAIVVIPVFLSYLVIPFGHNIILADLNIGVFFWIAISSIVPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISLQL 187
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_CYCTA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Cycas taitungensis GN=ndhA PE=3 SV=1) HSP 1 Score: 240.736 bits (613), Expect = 7.232e-63 Identity = 121/173 (69.94%), Postives = 147/173 (84.97%), Query Frame = -1 Query: 300 SILFPIESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 818 ++ F + ++E++G++W+ I I +L + IG+LVIVWLER+ISAGIQQRIGPEYA PLGILQALADG KLL KE+++PSRG+ LFSIGP+I VI IL SY VIPF ++VLADL+IG+F IA+SSIAP+GLLM+GYGSNNKYSF GGLRAAAQSISYEIPL LCVLSISL Sbjct: 14 NLSFVLGFIKEIFGLIWIRIYILIPILGVLIGLLVIVWLERKISAGIQQRIGPEYAGPLGILQALADGIKLLLKEDIIPSRGDLWLFSIGPAIVVIPILSSYLVIPFGRHIVLADLSIGVFFRIAVSSIAPLGLLMAGYGSNNKYSFSGGLRAAAQSISYEIPLALCVLSISL 186
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ANGEV (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Angiopteris evecta GN=ndhA PE=3 SV=1) HSP 1 Score: 239.58 bits (610), Expect = 1.611e-62 Identity = 118/173 (68.21%), Postives = 145/173 (83.82%), Query Frame = -1 Query: 300 ILFPIESL-QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 815 ILF L +E ++W++ I ++ +T+GVLVIVWLER+ISAGIQQRIGPEYA PLGI+QALADG KLL KE+++P+RG+ LF++GP+I VI + LSY VIPF +++LADL IG+F WIA+SSIAP+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL Sbjct: 14 ILFSESELSKEFLELIWIIVSILTTIVGVTLGVLVIVWLERKISAGIQQRIGPEYAGPLGIIQALADGIKLLLKEDVIPARGDIWLFNVGPAIVVIPVFLSYLVIPFGKHIILADLGIGVFFWIAVSSIAPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Huperzia lucidula GN=ndhA PE=3 SV=1) HSP 1 Score: 237.269 bits (604), Expect = 7.996e-62 Identity = 108/163 (66.26%), Postives = 140/163 (85.89%), Query Frame = -1 Query: 303 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSIS 791 ++++G +W++ PI Y L +TIG+ VIVWLER+ISAG+QQRIGPE+A PLGI+QALADG KLL KE+++PSRG+S LF++GP + V+ + LSY VIP + ++LADL+IG+F WIA+SS+AP+GLL +GYGSNNKYS LGGLRAAAQSISYEIPL LCVLS+S Sbjct: 22 KDLFGFIWIITPILTYTLGVTIGISVIVWLERKISAGVQQRIGPEHAGPLGIIQALADGAKLLSKEDIIPSRGDSFLFNVGPVMVVVPVFLSYLVIPLGHGIILADLDIGVFFWIAVSSVAPLGLLTAGYGSNNKYSSLGGLRAAAQSISYEIPLALCVLSVS 184
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_CHLAT (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chlorokybus atmophyticus GN=ndhA PE=3 SV=2) HSP 1 Score: 233.032 bits (593), Expect = 1.508e-60 Identity = 108/164 (65.85%), Postives = 142/164 (86.59%), Query Frame = -1 Query: 300 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 791 +++ LW+ PI + ++ TIGVLVIVWLER+ISAG+QQRIGPE+A PLG+LQ LADG KL+FKE+++PS+ + LF++GP++ VI + L+Y V+PF ++LV+AD+++G+F WIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQ+ISYEIPL+LCVL+I L Sbjct: 22 KDISAALWIPLPILVVIVGATIGVLVIVWLERKISAGVQQRIGPEFAGPLGVLQPLADGLKLVFKEDIIPSKADIWLFTLGPALVVIPVFLAYLVVPFGHDLVVADISLGVFFWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQAISYEIPLSLCVLAICL 185
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PSINU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Psilotum nudum GN=ndhA PE=3 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 3.359e-60 Identity = 110/164 (67.07%), Postives = 138/164 (84.15%), Query Frame = -1 Query: 300 QEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 791 ++++ ILW + I +L +T+GVLVIVWLER+ISAG+QQR+GPEY PLGILQ L DG KLL KE+++P++GN+ LF++GP+I VI + LSY VIPF ++L+DL IG+F WIA+SSI P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL Sbjct: 23 KDLFFILWTVLSILTLLLGVTMGVLVIVWLERKISAGMQQRMGPEYTGPLGILQTLMDGIKLLLKEDIVPAKGNTWLFNLGPAIVVIPVFLSYLVIPFGQKMILSDLGIGVFFWIAVSSIVPLGLLMTGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186 The following BLAST results are available for this feature:
BLAST of CX078269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX078269 ID=CX078269; Name=CX078269; organism=Citrus sinensis; type=EST; length=818bpback to top |