CX078269
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_MARPO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Marchantia polymorpha GN=ndhA PE=3 SV=1) HSP 1 Score: 231.876 bits (590), Expect = 3.359e-60 Identity = 111/173 (64.16%), Postives = 141/173 (81.50%), Query Frame = -1 Query: 300 SILFPIESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 818 S F + +E + LW++ I I +L +TIGVLV+VWLER+ISA IQQRIGPEYA PLGI+QALADG KL KE+++P++G+ LF+IGP + +I + LSY VIPF YN++LA+ +IG+F WIA+SS+ P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL L VLSI+L Sbjct: 13 SFFFTLGFSKEFFNFLWIIFSILILMLGVTIGVLVLVWLERKISAAIQQRIGPEYAGPLGIIQALADGIKLFLKEDIVPAQGDVWLFNIGPILVLIPVFLSYLVIPFEYNVILANFSIGVFFWIAVSSVVPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALSVLSIAL 185
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ZYGCR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Zygnema circumcarinatum GN=ndhA PE=3 SV=1) HSP 1 Score: 230.72 bits (587), Expect = 7.484e-60 Identity = 105/163 (64.42%), Postives = 140/163 (85.89%), Query Frame = -1 Query: 300 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 788 ++ +W+ PI + +L IT+GVLV+VWLER+ISA +QQRIGPEYA PLG +QALADG KL+ KE+++PSR + LF++GP+I VI +LLS+ VIPF++ L++AD++IG+F WIA+SS+AP+GLL++GYGSNNKY+FLGGLRAAAQSISYEIPL LCVLS+ L Sbjct: 22 QIATFVWICVPIVVLILGITLGVLVLVWLERKISAAVQQRIGPEYAGPLGTIQALADGLKLILKEDIIPSRADKWLFALGPAIVVIPVLLSFLVIPFNHQLIVADISIGMFFWIAVSSVAPVGLLVAGYGSNNKYAFLGGLRAAAQSISYEIPLALCVLSVVL 184
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ADICA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Adiantum capillus-veneris GN=ndhA PE=2 SV=2) HSP 1 Score: 229.95 bits (585), Expect = 1.277e-59 Identity = 106/158 (67.09%), Postives = 136/158 (86.08%), Query Frame = -1 Query: 300 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 773 +W+ A + VL +T+GVLVIVWLER++SAG+QQRIGPEYA PLGI+Q+LADG KLL KE+++P++GN+ LF+ GP++ V + ++Y VIPF +++L+DL IG+F WIAISSI P+GLL++GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL Sbjct: 29 IWIFASTLLLVLGVTMGVLVIVWLERKVSAGVQQRIGPEYAGPLGIIQSLADGIKLLLKEDIIPAKGNAWLFAAGPAVVVTPVFITYLVIPFGQHIILSDLGIGVFFWIAISSIVPLGLLVAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_NEPOL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nephroselmis olivacea GN=ndhA PE=3 SV=1) HSP 1 Score: 229.18 bits (583), Expect = 2.177e-59 Identity = 108/167 (64.67%), Postives = 139/167 (83.23%), Query Frame = -1 Query: 300 ESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 800 ++ +++ +LWV PI V+ T+GVLVIVWLER+ISAG+QQR+GPEY LG+LQ LADG KL+FKE+++P++ ++ LF++GP++ VI I L+Y V+PF L++ADL IGIF WIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYE+PL +CVLS+ L Sbjct: 21 DNFRDLGSVLWVPLPILSLVIVATLGVLVIVWLERKISAGVQQRVGPEYGGALGLLQPLADGLKLVFKEDVVPAKSDTWLFTLGPAVVVIPIFLAYLVVPFGQQLIIADLRIGIFFWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYELPLAICVLSVCL 187
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_STAPU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Staurastrum punctulatum GN=ndhA PE=3 SV=1) HSP 1 Score: 228.409 bits (581), Expect = 3.714e-59 Identity = 108/158 (68.35%), Postives = 136/158 (86.08%), Query Frame = -1 Query: 300 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 773 +W+ PI + VL T+GVLVIVWLER+ISA +QQRIGPEYA PLGI+QAL DG KL+ KE+++PS+G++ LF++GP+I VI I+LSY V+PF NL++AD+ IGIF WIAISS+AP+GLL++GYGSNNKYS LGGLRAAAQ+ISYEIPL LCVL+I L Sbjct: 28 IWICIPILVVVLGSTLGVLVIVWLERKISAAVQQRIGPEYAGPLGIIQALIDGLKLILKEDIIPSKGDNWLFTLGPAIVVIPIVLSYLVVPFGPNLIVADIGIGIFFWIAISSVAPMGLLIAGYGSNNKYSLLGGLRAAAQAISYEIPLALCVLAIIL 185
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_MESVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Mesostigma viride GN=ndhA PE=3 SV=1) HSP 1 Score: 227.639 bits (579), Expect = 6.336e-59 Identity = 104/158 (65.82%), Postives = 133/158 (84.18%), Query Frame = -1 Query: 300 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 773 LW+ PI + ++ +GVLV+VWLER+ISA +QQRIGPEYA PLG+LQ LADG KL FKE+++PS+G+ LF++GP+I VI I LSY ++PF NL+++++N+GIF WI +SS+AP+GLLMSGYGSNNKYSFLGGLRA AQS+SYEIPL LCVLSI L Sbjct: 28 LWIPLPILLLIILAVVGVLVVVWLERKISAAVQQRIGPEYAGPLGVLQPLADGLKLAFKEDIIPSKGDVLLFTLGPAIVVIPIFLSYLIVPFGENLIVSNINLGIFFWITVSSVAPLGLLMSGYGSNNKYSFLGGLRATAQSLSYEIPLALCVLSICL 185
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_CHAGL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chaetosphaeridium globosum GN=ndhA PE=3 SV=1) HSP 1 Score: 224.557 bits (571), Expect = 5.363e-58 Identity = 105/155 (67.74%), Postives = 134/155 (86.45%), Query Frame = -1 Query: 300 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 764 L PI I +L T+GVLVIVWLER+ISA +QQRIGPEYA PLG++QALADG KL+ KE+++P++G+ LFS+GP++ V+ + LSY V+PF + L+LA+L +GI WIA+SSIAP+GLLM+GYGSNNKYSFLGGLRAAAQ+ISYEIPL LCVLS++L Sbjct: 27 LIPILIILLGATLGVLVIVWLERKISAAVQQRIGPEYAGPLGMIQALADGLKLVLKEDIIPAKGDPWLFSVGPALVVVPVFLSYLVVPFGHELILANLGVGILFWIALSSIAPLGLLMAGYGSNNKYSFLGGLRAAAQAISYEIPLALCVLSVAL 181
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SYNP2 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhA PE=3 SV=1) HSP 1 Score: 219.55 bits (558), Expect = 1.725e-56 Identity = 104/174 (59.77%), Postives = 140/174 (80.46%), Query Frame = -1 Query: 300 IESLQ------EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803 IE+LQ E+ +W+ P+ + ++ T+GVLV+VWLER+ISA QQR+GPEYA PLG+LQ +ADG KL+FKE+++P++ + LF++GP++ VI + LSY ++PF NLV+ DLN+GIFLWI++SSIAPIGLLMSGY SNNKY+ LGGLRAAAQSISYEIPL L VL+I++ Sbjct: 12 IETLQSFGLSHEIAKTIWLPLPLLLMIIGATVGVLVVVWLERKISAAAQQRVGPEYAGPLGVLQPVADGLKLVFKEDVVPAKTDPWLFTLGPALVVIPVFLSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYSSNNKYALLGGLRAAAQSISYEIPLALAVLAIAM 185
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 7424) GN=ndhA PE=3 SV=1) HSP 1 Score: 217.238 bits (552), Expect = 8.563e-56 Identity = 99/159 (62.26%), Postives = 133/159 (83.65%), Query Frame = -1 Query: 300 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 776 ++W+ P+ + ++ T+GVLV+VWLER+ISA QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ + LF++GP + V+ + +SY ++PF NLV+ DLN+GIFLWI++SSIAPIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I++ Sbjct: 27 VIWMPLPMILMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGLKLVFKEDVVPAKADPWLFTLGPVLVVLPVFVSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIAM 185
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SYNY3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=ndhA PE=3 SV=2) HSP 1 Score: 216.853 bits (551), Expect = 1.118e-55 Identity = 100/157 (63.69%), Postives = 130/157 (82.80%), Query Frame = -1 Query: 306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776 + W+ P + ++ T+GVLV+VWLER+ISA QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ + LF++GP + V+ + LSY ++PF NLV+ D+N+GIFLWIA+SSIAPIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL+L VL+I Sbjct: 27 LFWIPLPSILMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDVVPAKADPWLFTLGPVLVVLPVFLSYLIVPFGQNLVITDINVGIFLWIALSSIAPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLSLAVLAI 183 The following BLAST results are available for this feature:
BLAST of CX078269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078269 ID=CX078269; Name=CX078269; organism=Citrus sinensis; type=EST; length=818bpback to top |