CX078269

Overview
NameCX078269
Unique NameCX078269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_MARPO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Marchantia polymorpha GN=ndhA PE=3 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 3.359e-60
Identity = 111/173 (64.16%), Postives = 141/173 (81.50%), Query Frame = -1
Query:  300 SILFPIESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 818
            S  F +   +E +  LW++  I I +L +TIGVLV+VWLER+ISA IQQRIGPEYA PLGI+QALADG KL  KE+++P++G+  LF+IGP + +I + LSY VIPF YN++LA+ +IG+F WIA+SS+ P+GLLM+GYGSNNKYSFLGGLRAAAQSISYEIPL L VLSI+L
Sbjct:   13 SFFFTLGFSKEFFNFLWIIFSILILMLGVTIGVLVLVWLERKISAAIQQRIGPEYAGPLGIIQALADGIKLFLKEDIVPAQGDVWLFNIGPILVLIPVFLSYLVIPFEYNVILANFSIGVFFWIAVSSVVPLGLLMAGYGSNNKYSFLGGLRAAAQSISYEIPLALSVLSIAL 185          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ZYGCR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Zygnema circumcarinatum GN=ndhA PE=3 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 7.484e-60
Identity = 105/163 (64.42%), Postives = 140/163 (85.89%), Query Frame = -1
Query:  300 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 788
            ++   +W+  PI + +L IT+GVLV+VWLER+ISA +QQRIGPEYA PLG +QALADG KL+ KE+++PSR +  LF++GP+I VI +LLS+ VIPF++ L++AD++IG+F WIA+SS+AP+GLL++GYGSNNKY+FLGGLRAAAQSISYEIPL LCVLS+ L
Sbjct:   22 QIATFVWICVPIVVLILGITLGVLVLVWLERKISAAVQQRIGPEYAGPLGTIQALADGLKLILKEDIIPSRADKWLFALGPAIVVIPVLLSFLVIPFNHQLIVADISIGMFFWIAVSSVAPVGLLVAGYGSNNKYAFLGGLRAAAQSISYEIPLALCVLSVVL 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_ADICA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Adiantum capillus-veneris GN=ndhA PE=2 SV=2)

HSP 1 Score: 229.95 bits (585), Expect = 1.277e-59
Identity = 106/158 (67.09%), Postives = 136/158 (86.08%), Query Frame = -1
Query:  300 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 773
            +W+ A   + VL +T+GVLVIVWLER++SAG+QQRIGPEYA PLGI+Q+LADG KLL KE+++P++GN+ LF+ GP++ V  + ++Y VIPF  +++L+DL IG+F WIAISSI P+GLL++GYGSNNKYSFLGGLRAAAQSISYEIPL LCVLSISL
Sbjct:   29 IWIFASTLLLVLGVTMGVLVIVWLERKVSAGVQQRIGPEYAGPLGIIQSLADGIKLLLKEDIIPAKGNAWLFAAGPAVVVTPVFITYLVIPFGQHIILSDLGIGVFFWIAISSIVPLGLLVAGYGSNNKYSFLGGLRAAAQSISYEIPLALCVLSISL 186          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_NEPOL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Nephroselmis olivacea GN=ndhA PE=3 SV=1)

HSP 1 Score: 229.18 bits (583), Expect = 2.177e-59
Identity = 108/167 (64.67%), Postives = 139/167 (83.23%), Query Frame = -1
Query:  300 ESLQEVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 800
            ++ +++  +LWV  PI   V+  T+GVLVIVWLER+ISAG+QQR+GPEY   LG+LQ LADG KL+FKE+++P++ ++ LF++GP++ VI I L+Y V+PF   L++ADL IGIF WIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYE+PL +CVLS+ L
Sbjct:   21 DNFRDLGSVLWVPLPILSLVIVATLGVLVIVWLERKISAGVQQRVGPEYGGALGLLQPLADGLKLVFKEDVVPAKSDTWLFTLGPAVVVIPIFLAYLVVPFGQQLIIADLRIGIFFWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYELPLAICVLSVCL 187          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_STAPU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Staurastrum punctulatum GN=ndhA PE=3 SV=1)

HSP 1 Score: 228.409 bits (581), Expect = 3.714e-59
Identity = 108/158 (68.35%), Postives = 136/158 (86.08%), Query Frame = -1
Query:  300 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 773
            +W+  PI + VL  T+GVLVIVWLER+ISA +QQRIGPEYA PLGI+QAL DG KL+ KE+++PS+G++ LF++GP+I VI I+LSY V+PF  NL++AD+ IGIF WIAISS+AP+GLL++GYGSNNKYS LGGLRAAAQ+ISYEIPL LCVL+I L
Sbjct:   28 IWICIPILVVVLGSTLGVLVIVWLERKISAAVQQRIGPEYAGPLGIIQALIDGLKLILKEDIIPSKGDNWLFTLGPAIVVIPIVLSYLVVPFGPNLIVADIGIGIFFWIAISSVAPMGLLIAGYGSNNKYSLLGGLRAAAQAISYEIPLALCVLAIIL 185          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_MESVI (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Mesostigma viride GN=ndhA PE=3 SV=1)

HSP 1 Score: 227.639 bits (579), Expect = 6.336e-59
Identity = 104/158 (65.82%), Postives = 133/158 (84.18%), Query Frame = -1
Query:  300 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 773
            LW+  PI + ++   +GVLV+VWLER+ISA +QQRIGPEYA PLG+LQ LADG KL FKE+++PS+G+  LF++GP+I VI I LSY ++PF  NL+++++N+GIF WI +SS+AP+GLLMSGYGSNNKYSFLGGLRA AQS+SYEIPL LCVLSI L
Sbjct:   28 LWIPLPILLLIILAVVGVLVVVWLERKISAAVQQRIGPEYAGPLGVLQPLADGLKLAFKEDIIPSKGDVLLFTLGPAIVVIPIFLSYLIVPFGENLIVSNINLGIFFWITVSSVAPLGLLMSGYGSNNKYSFLGGLRATAQSLSYEIPLALCVLSICL 185          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_CHAGL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Chaetosphaeridium globosum GN=ndhA PE=3 SV=1)

HSP 1 Score: 224.557 bits (571), Expect = 5.363e-58
Identity = 105/155 (67.74%), Postives = 134/155 (86.45%), Query Frame = -1
Query:  300 LAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 764
            L PI I +L  T+GVLVIVWLER+ISA +QQRIGPEYA PLG++QALADG KL+ KE+++P++G+  LFS+GP++ V+ + LSY V+PF + L+LA+L +GI  WIA+SSIAP+GLLM+GYGSNNKYSFLGGLRAAAQ+ISYEIPL LCVLS++L
Sbjct:   27 LIPILIILLGATLGVLVIVWLERKISAAVQQRIGPEYAGPLGMIQALADGLKLVLKEDIIPAKGDPWLFSVGPALVVVPVFLSYLVVPFGHELILANLGVGILFWIALSSIAPLGLLMAGYGSNNKYSFLGGLRAAAQAISYEIPLALCVLSVAL 181          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SYNP2 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndhA PE=3 SV=1)

HSP 1 Score: 219.55 bits (558), Expect = 1.725e-56
Identity = 104/174 (59.77%), Postives = 140/174 (80.46%), Query Frame = -1
Query:  300 IESLQ------EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 803
            IE+LQ      E+   +W+  P+ + ++  T+GVLV+VWLER+ISA  QQR+GPEYA PLG+LQ +ADG KL+FKE+++P++ +  LF++GP++ VI + LSY ++PF  NLV+ DLN+GIFLWI++SSIAPIGLLMSGY SNNKY+ LGGLRAAAQSISYEIPL L VL+I++
Sbjct:   12 IETLQSFGLSHEIAKTIWLPLPLLLMIIGATVGVLVVVWLERKISAAAQQRVGPEYAGPLGVLQPVADGLKLVFKEDVVPAKTDPWLFTLGPALVVIPVFLSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYSSNNKYALLGGLRAAAQSISYEIPLALAVLAIAM 185          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_CYAP7 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanothece sp. (strain PCC 7424) GN=ndhA PE=3 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 8.563e-56
Identity = 99/159 (62.26%), Postives = 133/159 (83.65%), Query Frame = -1
Query:  300 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 776
            ++W+  P+ + ++  T+GVLV+VWLER+ISA  QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ +  LF++GP + V+ + +SY ++PF  NLV+ DLN+GIFLWI++SSIAPIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I++
Sbjct:   27 VIWMPLPMILMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGLKLVFKEDVVPAKADPWLFTLGPVLVVLPVFVSYLIVPFGQNLVITDLNVGIFLWISLSSIAPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIAM 185          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SYNY3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechocystis sp. (strain PCC 6803) GN=ndhA PE=3 SV=2)

HSP 1 Score: 216.853 bits (551), Expect = 1.118e-55
Identity = 100/157 (63.69%), Postives = 130/157 (82.80%), Query Frame = -1
Query:  306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776
            + W+  P  + ++  T+GVLV+VWLER+ISA  QQRIGPEYA PLG+LQ +ADG KL+FKE+++P++ +  LF++GP + V+ + LSY ++PF  NLV+ D+N+GIFLWIA+SSIAPIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL+L VL+I
Sbjct:   27 LFWIPLPSILMIIGATVGVLVVVWLERKISAAAQQRIGPEYAGPLGVLQPVADGIKLVFKEDVVPAKADPWLFTLGPVLVVLPVFLSYLIVPFGQNLVITDINVGIFLWIALSSIAPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLSLAVLAI 183          
The following BLAST results are available for this feature:
BLAST of CX078269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_MARPO3.359e-6064.16NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ZYGCR7.484e-6064.42NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ADICA1.277e-5967.09NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_NEPOL2.177e-5964.67NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_STAPU3.714e-5968.35NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_MESVI6.336e-5965.82NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_CHAGL5.363e-5867.74NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_SYNP21.725e-5659.77NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_CYAP78.563e-5662.26NAD(P)H-quinone oxidoreductase subunit 1 OS=Cyanot... [more]
NU1C_SYNY31.118e-5563.69NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078269 ID=CX078269; Name=CX078269; organism=Citrus sinensis; type=EST; length=818bp
AAATTCTATAGGGTTGGTCTTTTAAGCCCGCTTCAAGCTAGGATGATCAA
TCGACCTGTCTTGGGGTAAGGGCTTCCTCCACTTTTACTTTTGTTTACTT
ATCCTTAACGCTTGTACATAGGAAATGAGACTTAATCCACGTTTACTGCG
AATTTCGAAGGTGTTTTCTTTCACTCATATATAACTATCTAATTTCTTTT
ATTAACCTAAAGAGTCAATAAATGAATAAAAAAATGAGGATTTCTATTCA
AGTTCTTTTTTTTCTAGAACGAAAAGCTTAGGTTTTAGCGAATCACACGT
AGAGATATTGATAAAACACATAAAGTTAATGGTATTTCATAACTAATCGA
TTGAGCAGCAGCTCGCAGACCACCTAAAAAGGAATATTTATTATTTGATC
CATATCCTGACATAAGAAGTCCAATAGGGGCAATACTTGAAATGGCAATC
CATAAAAAAATACCGATATTGAGGTCAGCTAAAACAAGGTTATAACTAAA
AGGAATTACTGAATAACTTAGTAGAATTGCTATGACTGCTATAGATGGAC
CAATACTGAATAAACTACTATTTCCTCTAGATGGAAGAAGGTTTTCTTTG
AAAAGGAGTTTTGTCCCATCGGCTAAAGCTTGAAGAATTCCCAAAGGGCT
GGCGTATTCAGGCCCAATACGCTGTTGTATTCCTGCAGATATTTCTCTTT
CTAACCACACAATTACTAGGACACCGATTGTGATTGCCAATACATAAATC
GAAATAGGGGCAAGCACCCATAGGATCCCATAGACCTCTTGTAGGGATTC
AATCGGGAAAAGAATTGA
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