CX078269
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPX (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH8102) GN=ndhA PE=3 SV=1) HSP 1 Score: 208.379 bits (529), Expect = 3.978e-53 Identity = 99/157 (63.06%), Postives = 129/157 (82.17%), Query Frame = -1 Query: 306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776 +LW+ P+ + ++A +GVLV VWLER+ISA +QQRIGPEYA LG+LQ LADG KLL KE+++P+R +S LF++GP + VI +++S+ +IPF NL+++++ +GIFLWIA SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 28 LLWLPLPMLLVLVAAVVGVLVSVWLERKISAAVQQRIGPEYAGALGVLQPLADGLKLLVKEDIIPARADSLLFTLGPVLVVIPVIISWLIIPFGQNLLISNVGVGIFLWIAFSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAI 184
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SYNS3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9311) GN=ndhA PE=3 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 5.195e-53 Identity = 95/157 (60.51%), Postives = 129/157 (82.17%), Query Frame = -1 Query: 306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776 +LW+ P+ + ++A +GVLV VWLER+ISA +QQR+GPEYA LG+LQ LADG KLL KE+++P R +S LF++GP + V+ ++LS+ ++PF NL+++D+ +GIFLWI++SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ Sbjct: 27 MLWLPFPMLLVLVAAVVGVLVTVWLERKISAAVQQRVGPEYAGALGVLQPLADGLKLLVKEDIIPDRADSILFTLGPVLVVVPVILSWLIVPFGQNLLISDVGVGIFLWISLSSVQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PROMT (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=ndhA PE=3 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 5.195e-53 Identity = 99/161 (61.49%), Postives = 131/161 (81.37%), Query Frame = -1 Query: 306 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 788 E+ +LW+ P+ + +++ IGVLV VWLER+ISA QQRIGPEYA LGILQ +ADG KLL KE+++P+R +S LF++GP + ++ ++LS+ ++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 23 ELAHLLWIPLPMLLVLVSAVIGVLVTVWLERKISAAAQQRIGPEYAGALGILQPMADGLKLLVKEDIIPARADSVLFTVGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYSSNNKYSLLGGLRAAAQSISYEIPLALAVLAI 183
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PROM1 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL1A) GN=ndhA PE=3 SV=1) HSP 1 Score: 207.994 bits (528), Expect = 5.195e-53 Identity = 99/161 (61.49%), Postives = 131/161 (81.37%), Query Frame = -1 Query: 306 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 788 E+ +LW+ P+ + +++ IGVLV VWLER+ISA QQRIGPEYA LGILQ +ADG KLL KE+++P+R +S LF++GP + ++ ++LS+ ++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I Sbjct: 23 ELAHLLWIPLPMLLVLVSAVIGVLVTVWLERKISAAAQQRIGPEYAGALGILQPMADGLKLLVKEDIIPARADSVLFTVGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYSSNNKYSLLGGLRAAAQSISYEIPLALAVLAI 183
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_TRIEI (NAD(P)H-quinone oxidoreductase subunit 1 OS=Trichodesmium erythraeum (strain IMS101) GN=ndhA PE=3 SV=1) HSP 1 Score: 206.838 bits (525), Expect = 1.157e-52 Identity = 99/163 (60.74%), Postives = 126/163 (77.30%), Query Frame = -1 Query: 300 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 788 E+ LW+ P+ + ++ T+GVLV VWLER+ISA QQRIGPE+ PLG L LADG KLLFKE+++P++ + LF++GP I + + LSY V+PF NLV+ DL + IFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++++ Sbjct: 23 EIAKTLWLPFPMLLMIVVATVGVLVTVWLERKISAAAQQRIGPEFMGPLGTLAPLADGLKLLFKEDVVPAKADPLLFTLGPVIVAVPVFLSYLVVPFGQNLVITDLGVAIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAVAM 185
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPW (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH7803) GN=ndhA PE=3 SV=2) HSP 1 Score: 205.297 bits (521), Expect = 3.367e-52 Identity = 93/157 (59.24%), Postives = 129/157 (82.17%), Query Frame = -1 Query: 306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776 ++W+ P+ + ++A +GVLV VWLER+ISA +QQRIGPEYA LG+LQ LADG KLL KE+++P+R + LF++GP + V+ ++LS+ ++PF NL+++++ +GIFLWI++SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ Sbjct: 27 LIWLPLPMLLVLVAAVVGVLVTVWLERKISAAVQQRIGPEYAGALGVLQPLADGLKLLVKEDIIPARADGLLFTLGPVLVVVPVILSWLIVPFGQNLLISNVGVGIFLWISLSSVQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PROM5 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9515) GN=ndhA PE=3 SV=1) HSP 1 Score: 205.297 bits (521), Expect = 3.367e-52 Identity = 97/163 (59.51%), Postives = 131/163 (80.37%), Query Frame = -1 Query: 300 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 788 E+ I+W+ P+ I +++ +GVLV VWLER+ISA QQRIGPEYA LG+LQ +ADG KLL KE+++P++ +S LF+ GP + ++ ++LS+ ++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ L Sbjct: 23 EIAHIIWLPLPMLIVLVSAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADSILFTTGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAVVL 185
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PLEBO (NAD(P)H-quinone oxidoreductase subunit 1 OS=Plectonema boryanum GN=ndhA PE=3 SV=1) HSP 1 Score: 204.912 bits (520), Expect = 4.398e-52 Identity = 96/156 (61.54%), Postives = 125/156 (80.13%), Query Frame = -1 Query: 306 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 773 LW+ P+ I +LA T+ VLV+VWLER+ISA QQRIGPE+ PLG+L LADG KL+ KE+++P++ + LF++GP+I VI + LSY ++PF NL + D+ +GIFLWIA+SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYE+PL L VL++ Sbjct: 28 LWMPLPMLIMLLAATVSVLVVVWLERKISAAAQQRIGPEFIGPLGVLAPLADGLKLVLKEDVVPAKADKLLFTLGPAIVVIPVFLSYLILPFGQNLQITDVGLGIFLWIALSSVVPIGLLMSGYASNNKYSLLGGLRAAAQSISYELPLALSVLAV 183
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PROMS (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain AS9601) GN=ndhA PE=3 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 5.744e-52 Identity = 97/163 (59.51%), Postives = 130/163 (79.75%), Query Frame = -1 Query: 300 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 788 E+ I+W+ P+ + ++A +GVLV VWLER+ISA QQRIGPEYA LG+LQ +ADG KLL KE+++P++ + LF+ GP + ++ ++LS+ ++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L Sbjct: 23 EIAHIIWLPLPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PROM9 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhA PE=3 SV=1) HSP 1 Score: 204.527 bits (519), Expect = 5.744e-52 Identity = 97/163 (59.51%), Postives = 130/163 (79.75%), Query Frame = -1 Query: 300 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 788 E+ I+W+ P+ + ++A +GVLV VWLER+ISA QQRIGPEYA LG+LQ +ADG KLL KE+++P++ + LF+ GP + ++ ++LS+ ++PF NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L Sbjct: 23 EIAHIIWLPIPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185 The following BLAST results are available for this feature:
BLAST of CX078269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX078269 ID=CX078269; Name=CX078269; organism=Citrus sinensis; type=EST; length=818bpback to top |