CX078269

Overview
NameCX078269
Unique NameCX078269
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length818
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPX (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH8102) GN=ndhA PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.978e-53
Identity = 99/157 (63.06%), Postives = 129/157 (82.17%), Query Frame = -1
Query:  306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776
            +LW+  P+ + ++A  +GVLV VWLER+ISA +QQRIGPEYA  LG+LQ LADG KLL KE+++P+R +S LF++GP + VI +++S+ +IPF  NL+++++ +GIFLWIA SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   28 LLWLPLPMLLVLVAAVVGVLVSVWLERKISAAVQQRIGPEYAGALGVLQPLADGLKLLVKEDIIPARADSLLFTLGPVLVVIPVIISWLIIPFGQNLLISNVGVGIFLWIAFSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAI 184          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SYNS3 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain CC9311) GN=ndhA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.195e-53
Identity = 95/157 (60.51%), Postives = 129/157 (82.17%), Query Frame = -1
Query:  306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776
            +LW+  P+ + ++A  +GVLV VWLER+ISA +QQR+GPEYA  LG+LQ LADG KLL KE+++P R +S LF++GP + V+ ++LS+ ++PF  NL+++D+ +GIFLWI++SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++
Sbjct:   27 MLWLPFPMLLVLVAAVVGVLVTVWLERKISAAVQQRVGPEYAGALGVLQPLADGLKLLVKEDIIPDRADSILFTLGPVLVVVPVILSWLIVPFGQNLLISDVGVGIFLWISLSSVQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PROMT (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL2A) GN=ndhA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.195e-53
Identity = 99/161 (61.49%), Postives = 131/161 (81.37%), Query Frame = -1
Query:  306 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 788
            E+  +LW+  P+ + +++  IGVLV VWLER+ISA  QQRIGPEYA  LGILQ +ADG KLL KE+++P+R +S LF++GP + ++ ++LS+ ++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   23 ELAHLLWIPLPMLLVLVSAVIGVLVTVWLERKISAAAQQRIGPEYAGALGILQPMADGLKLLVKEDIIPARADSVLFTVGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYSSNNKYSLLGGLRAAAQSISYEIPLALAVLAI 183          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PROM1 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain NATL1A) GN=ndhA PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 5.195e-53
Identity = 99/161 (61.49%), Postives = 131/161 (81.37%), Query Frame = -1
Query:  306 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 788
            E+  +LW+  P+ + +++  IGVLV VWLER+ISA  QQRIGPEYA  LGILQ +ADG KLL KE+++P+R +S LF++GP + ++ ++LS+ ++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I
Sbjct:   23 ELAHLLWIPLPMLLVLVSAVIGVLVTVWLERKISAAAQQRIGPEYAGALGILQPMADGLKLLVKEDIIPARADSVLFTVGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYSSNNKYSLLGGLRAAAQSISYEIPLALAVLAI 183          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_TRIEI (NAD(P)H-quinone oxidoreductase subunit 1 OS=Trichodesmium erythraeum (strain IMS101) GN=ndhA PE=3 SV=1)

HSP 1 Score: 206.838 bits (525), Expect = 1.157e-52
Identity = 99/163 (60.74%), Postives = 126/163 (77.30%), Query Frame = -1
Query:  300 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 788
            E+   LW+  P+ + ++  T+GVLV VWLER+ISA  QQRIGPE+  PLG L  LADG KLLFKE+++P++ +  LF++GP I  + + LSY V+PF  NLV+ DL + IFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++++
Sbjct:   23 EIAKTLWLPFPMLLMIVVATVGVLVTVWLERKISAAAQQRIGPEFMGPLGTLAPLADGLKLLFKEDVVPAKADPLLFTLGPVIVAVPVFLSYLVVPFGQNLVITDLGVAIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAVAM 185          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_SYNPW (NAD(P)H-quinone oxidoreductase subunit 1 OS=Synechococcus sp. (strain WH7803) GN=ndhA PE=3 SV=2)

HSP 1 Score: 205.297 bits (521), Expect = 3.367e-52
Identity = 93/157 (59.24%), Postives = 129/157 (82.17%), Query Frame = -1
Query:  306 ILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 776
            ++W+  P+ + ++A  +GVLV VWLER+ISA +QQRIGPEYA  LG+LQ LADG KLL KE+++P+R +  LF++GP + V+ ++LS+ ++PF  NL+++++ +GIFLWI++SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++
Sbjct:   27 LIWLPLPMLLVLVAAVVGVLVTVWLERKISAAVQQRIGPEYAGALGVLQPLADGLKLLVKEDIIPARADGLLFTLGPVLVVVPVILSWLIVPFGQNLLISNVGVGIFLWISLSSVQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALAVLAV 183          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PROM5 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9515) GN=ndhA PE=3 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.367e-52
Identity = 97/163 (59.51%), Postives = 131/163 (80.37%), Query Frame = -1
Query:  300 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 788
            E+  I+W+  P+ I +++  +GVLV VWLER+ISA  QQRIGPEYA  LG+LQ +ADG KLL KE+++P++ +S LF+ GP + ++ ++LS+ ++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL++ L
Sbjct:   23 EIAHIIWLPLPMLIVLVSAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADSILFTTGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAVVL 185          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PLEBO (NAD(P)H-quinone oxidoreductase subunit 1 OS=Plectonema boryanum GN=ndhA PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.398e-52
Identity = 96/156 (61.54%), Postives = 125/156 (80.13%), Query Frame = -1
Query:  306 LWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSI 773
            LW+  P+ I +LA T+ VLV+VWLER+ISA  QQRIGPE+  PLG+L  LADG KL+ KE+++P++ +  LF++GP+I VI + LSY ++PF  NL + D+ +GIFLWIA+SS+ PIGLLMSGY SNNKYS LGGLRAAAQSISYE+PL L VL++
Sbjct:   28 LWMPLPMLIMLLAATVSVLVVVWLERKISAAAQQRIGPEFIGPLGVLAPLADGLKLVLKEDVVPAKADKLLFTLGPAIVVIPVFLSYLILPFGQNLQITDVGLGIFLWIALSSVVPIGLLMSGYASNNKYSLLGGLRAAAQSISYELPLALSVLAV 183          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PROMS (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain AS9601) GN=ndhA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.744e-52
Identity = 97/163 (59.51%), Postives = 130/163 (79.75%), Query Frame = -1
Query:  300 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 788
            E+  I+W+  P+ + ++A  +GVLV VWLER+ISA  QQRIGPEYA  LG+LQ +ADG KLL KE+++P++ +  LF+ GP + ++ ++LS+ ++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L
Sbjct:   23 EIAHIIWLPLPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185          
BLAST of CX078269 vs. ExPASy Swiss-Prot
Match: NU1C_PROM9 (NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochlorococcus marinus (strain MIT 9312) GN=ndhA PE=3 SV=1)

HSP 1 Score: 204.527 bits (519), Expect = 5.744e-52
Identity = 97/163 (59.51%), Postives = 130/163 (79.75%), Query Frame = -1
Query:  300 EVYGILWVLAPISIYVLAITIGVLVIVWLEREISAGIQQRIGPEYASPLGILQALADGTKLLFKENLLPSRGNSSLFSIGPSIAVIAILLSYSVIPFSYNLVLADLNIGIFLWIAISSIAPIGLLMSGYGSNNKYSFLGGLRAAAQSISYEIPLTLCVLSISL 788
            E+  I+W+  P+ + ++A  +GVLV VWLER+ISA  QQRIGPEYA  LG+LQ +ADG KLL KE+++P++ +  LF+ GP + ++ ++LS+ ++PF  NL+++++ IGIFLWIA+SSI PIGLLMSGY SNNKYS LGGLRAAAQSISYEIPL L VL+I L
Sbjct:   23 EIAHIIWLPIPMLLVLVAAVVGVLVTVWLERKISAAAQQRIGPEYAGALGVLQPIADGLKLLVKEDIIPAKADGILFTAGPILVLVPVILSWLIVPFGQNLLISNVGIGIFLWIALSSIQPIGLLMSGYASNNKYSLLGGLRAAAQSISYEIPLALSVLAIVL 185          
The following BLAST results are available for this feature:
BLAST of CX078269 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_SYNPX3.978e-5363.06NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_SYNS35.195e-5360.51NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_PROMT5.195e-5361.49NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PROM15.195e-5361.49NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_TRIEI1.157e-5260.74NAD(P)H-quinone oxidoreductase subunit 1 OS=Tricho... [more]
NU1C_SYNPW3.367e-5259.24NAD(P)H-quinone oxidoreductase subunit 1 OS=Synech... [more]
NU1C_PROM53.367e-5259.51NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PLEBO4.398e-5261.54NAD(P)H-quinone oxidoreductase subunit 1 OS=Plecto... [more]
NU1C_PROMS5.744e-5259.51NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]
NU1C_PROM95.744e-5259.51NAD(P)H-quinone oxidoreductase subunit 1 OS=Prochl... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078269 ID=CX078269; Name=CX078269; organism=Citrus sinensis; type=EST; length=818bp
AAATTCTATAGGGTTGGTCTTTTAAGCCCGCTTCAAGCTAGGATGATCAA
TCGACCTGTCTTGGGGTAAGGGCTTCCTCCACTTTTACTTTTGTTTACTT
ATCCTTAACGCTTGTACATAGGAAATGAGACTTAATCCACGTTTACTGCG
AATTTCGAAGGTGTTTTCTTTCACTCATATATAACTATCTAATTTCTTTT
ATTAACCTAAAGAGTCAATAAATGAATAAAAAAATGAGGATTTCTATTCA
AGTTCTTTTTTTTCTAGAACGAAAAGCTTAGGTTTTAGCGAATCACACGT
AGAGATATTGATAAAACACATAAAGTTAATGGTATTTCATAACTAATCGA
TTGAGCAGCAGCTCGCAGACCACCTAAAAAGGAATATTTATTATTTGATC
CATATCCTGACATAAGAAGTCCAATAGGGGCAATACTTGAAATGGCAATC
CATAAAAAAATACCGATATTGAGGTCAGCTAAAACAAGGTTATAACTAAA
AGGAATTACTGAATAACTTAGTAGAATTGCTATGACTGCTATAGATGGAC
CAATACTGAATAAACTACTATTTCCTCTAGATGGAAGAAGGTTTTCTTTG
AAAAGGAGTTTTGTCCCATCGGCTAAAGCTTGAAGAATTCCCAAAGGGCT
GGCGTATTCAGGCCCAATACGCTGTTGTATTCCTGCAGATATTTCTCTTT
CTAACCACACAATTACTAGGACACCGATTGTGATTGCCAATACATAAATC
GAAATAGGGGCAAGCACCCATAGGATCCCATAGACCTCTTGTAGGGATTC
AATCGGGAAAAGAATTGA
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