CX078268

Overview
NameCX078268
Unique NameCX078268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CYCTA (30S ribosomal protein S15, chloroplastic OS=Cycas taitungensis GN=rps15 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.955e-17
Identity = 50/90 (55.56%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            M KN+ I   +  K+ + S  VE Q++  T+ I RLT HLELHR+DYSSQRGL +IL KR+RLL YLSK+NR RY++LI +L+IR  K R
Sbjct:    1 MPKNSPIRSSLILKERRRS--VESQIYHLTDRILRLTHHLELHRRDYSSQRGLWQILGKRKRLLVYLSKRNRPRYEDLIGQLSIRGLKIR 88          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_SOLTU (Putative membrane protein ycf1 OS=Solanum tuberosum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.011e-17
Identity = 37/49 (75.51%), Postives = 44/49 (89.80%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 149
            K +LI+ KFF+W N RLEDL CMNRYWF+TNNGSRFS++R+HMYPRLKI
Sbjct: 1838 KKKLIKFKFFLWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1886          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_IPOPU (Putative membrane protein ycf1 OS=Ipomoea purpurea GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.544e-17
Identity = 38/50 (76.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152
            KN+LIQ KFF+W N RLEDL CMNRYWF+TNNGSRFS++R+HMY  LKIR
Sbjct: 2008 KNELIQFKFFLWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYLPLKIR 2057          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_COFAR (Putative membrane protein ycf1 OS=Coffea arabica GN=ycf1 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 6.544e-17
Identity = 37/48 (77.08%), Postives = 44/48 (91.67%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLK 146
            K +LI+LKFF+W N RLEDL CMNRYWF+TNNGSRFSM+R++MYPRLK
Sbjct: 1825 KKELIKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIYMYPRLK 1872          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_EUCGG (Putative membrane protein ycf1 OS=Eucalyptus globulus subsp. globulus GN=ycf1 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.547e-17
Identity = 36/49 (73.47%), Postives = 44/49 (89.80%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 149
            K +LI+LKFF+W N RLEDL CMNRYWF+TNNG RF+M+R+HMYPRL+I
Sbjct: 1828 KKKLIKLKFFLWPNYRLEDLSCMNRYWFDTNNGGRFTMIRIHMYPRLQI 1876          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CRYJA (30S ribosomal protein S15, chloroplastic OS=Cryptomeria japonica GN=rps15 PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 8.597e-17
Identity = 48/85 (56.47%), Postives = 61/85 (71.76%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIR 772
            M+KN  +SVR      +  GSVE QV   T  I+RLT HL+LH +DYSSQRGL KI+ KR+RLL YL KK+R+RYK LI +L++R
Sbjct:    1 MIKN--LSVRPSLIPREQRGSVESQVCYLTGRIKRLTEHLDLHGRDYSSQRGLWKIVGKRKRLLIYLFKKDRLRYKSLIGQLDMR 83          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_VITVI (Putative membrane protein ycf1 OS=Vitis vinifera GN=ycf1 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.116e-16
Identity = 40/53 (75.47%), Postives = 45/53 (84.91%), Query Frame = 3
Query:    3 KNQLIQLK---FFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152
            KNQLI+LK    F+W N RLEDL CMNRYWF+TNNGS FSM+R+HMYPRLKIR
Sbjct: 1841 KNQLIKLKKLKLFLWPNYRLEDLACMNRYWFDTNNGSCFSMIRIHMYPRLKIR 1893          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_AETCO (Putative membrane protein ycf1 OS=Aethionema cordifolium GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.116e-16
Identity = 37/49 (75.51%), Postives = 41/49 (83.67%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 149
            K  LI LKFF+W N RLEDL CMNRYWFNTNNG+ FSM+R+HMY RLKI
Sbjct: 1724 KTNLINLKFFLWPNFRLEDLACMNRYWFNTNNGNHFSMIRIHMYTRLKI 1772          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_ANGEV (30S ribosomal protein S15, chloroplastic OS=Angiopteris evecta GN=rps15 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.466e-16
Identity = 47/87 (54.02%), Postives = 59/87 (67.82%), Query Frame = 2
Query:  527 NAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            N  IS+       K +GSVEFQ++  TN + +LTSHL+ H KDYSSQRGL K+L KR+RLL YLSK +   Y+ LI+KL IR  K R
Sbjct:    2 NKKISLHSSSGPVKKTGSVEFQIYHLTNQVIKLTSHLKQHSKDYSSQRGLWKMLGKRKRLLVYLSKNDINCYENLINKLGIRGLKIR 88          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_CUCSA (Putative membrane protein ycf1 OS=Cucumis sativus GN=ycf1-A PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.904e-16
Identity = 37/50 (74.00%), Postives = 43/50 (86.00%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152
            +NQL  LK F+W N RLEDL CMNRYWF+TNN SRFSM+R+HMYP+LKIR
Sbjct: 1830 QNQLKNLKLFLWPNYRLEDLACMNRYWFDTNNSSRFSMLRIHMYPQLKIR 1879          
The following BLAST results are available for this feature:
BLAST of CX078268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
RR15_CYCTA2.955e-1755.5630S ribosomal protein S15, chloroplastic OS=Cycas ... [more]
YCF1_SOLTU5.011e-1775.51Putative membrane protein ycf1 OS=Solanum tuberosu... [more]
YCF1_IPOPU6.544e-1776.00Putative membrane protein ycf1 OS=Ipomoea purpurea... [more]
YCF1_COFAR6.544e-1777.08Putative membrane protein ycf1 OS=Coffea arabica G... [more]
YCF1_EUCGG8.547e-1773.47Putative membrane protein ycf1 OS=Eucalyptus globu... [more]
RR15_CRYJA8.597e-1756.4730S ribosomal protein S15, chloroplastic OS=Crypto... [more]
YCF1_VITVI1.116e-1675.47Putative membrane protein ycf1 OS=Vitis vinifera G... [more]
YCF1_AETCO1.116e-1675.51Putative membrane protein ycf1 OS=Aethionema cordi... [more]
RR15_ANGEV1.466e-1654.0230S ribosomal protein S15, chloroplastic OS=Angiop... [more]
YCF1_CUCSA1.904e-1674.00Putative membrane protein ycf1 OS=Cucumis sativus ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078268 ID=CX078268; Name=CX078268; organism=Citrus sinensis; type=EST; length=868bp
AGAAAAATCAACTAATTCAATTAAAGTTCTTTATTTGGGCCAATTCTCGA
TTAGAAGATTTAATTTGTATGAATCGGTATTGGTTTAATACCAATAATGG
GAGTCGTTTCAGTATGGTAAGGGTCCATATGTATCCACGATTGAAAATTC
GTTAATAGTGTGCTTTTCCTATCTATCATGTCCCATTTTGGGATATGAAA
ACAAAGAAATGTATACATGTCTTGTCTTCCATTCCAGTCTGATACAAGAT
ACCAAATTAATGGCGAACATTTTAATTAGATCCATAAATGAATCAAGAAA
CTCTTTTTTTTAGGTCCAAATTTTTCTCTTTTGCCGAAATATCCATCCTT
TTAGATGCCTAATCAAATTGAAAATTGGATTGATTATTGATATTGATTTT
CTAGCAAGTTCATAACGAACTTAAGATTATTGTGTATATCAAATTGAAGT
AACTAGTATTATTATTACTGATCAGTAAAATTCATCTTAAAAAAGGAAGG
GGGAGGGGTTTCGTTTTATGGTAAAAAATGCATTCATCTCAGTTAGGGTT
CAAGAAAAAAAAGAAAAAAACAGCGGATCGGTTGAATTTCAAGTATTTCG
TTTCACCAACACGATCCGGAGACTTACTTCACATTTAGAATTGCACAGAA
AAGACTATTCATCTCAAAGGGGTCTACGTAAAATTTTGGAAAAACGCCAA
CGTCTACTAGCTTATTTGTCAAAGAAAAATAGAGTACGTTATAAAGAATT
AATTAGTAAGTTGAATATCCGGGAGTCAAAAAATCGTTAATTTGAAATTT
GAAAAACAATTTCGAATTATTTGATTTTGACTGTTGATGAACTTCTTGTT
GTTTTCAACAATTCATGT
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