CX078268

Overview
NameCX078268
Unique NameCX078268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CUCSA (30S ribosomal protein S15, chloroplastic OS=Cucumis sativus GN=rps15 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.133e-31
Identity = 68/90 (75.56%), Postives = 80/90 (88.89%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKN+F SV  QE+K++N GSVEFQV  FTN IRRLTSHLELH+KDY SQRGLRKIL KRQRLL+YLSKKN++RYKELI++L+IRESK +
Sbjct:    1 MVKNSFSSVISQEEKKENGGSVEFQVVSFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLSYLSKKNKMRYKELINQLDIRESKTQ 90          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_ARATH (30S ribosomal protein S15, chloroplastic OS=Arabidopsis thaliana GN=rps15 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 6.133e-31
Identity = 71/90 (78.89%), Postives = 78/90 (86.67%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            M+KN  IS   +E+KE++ GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI++LNIRE K R
Sbjct:    1 MIKNIVISF--EEQKEESRGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELINQLNIRELKTR 88          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_PIPCE (30S ribosomal protein S15, chloroplastic OS=Piper cenocladum GN=rps15 PE=3 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 8.009e-31
Identity = 68/90 (75.56%), Postives = 74/90 (82.22%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKN+FIS   QE+KEKN GS EFQ+  FT  IRRLTSHLELH+KDY SQRGLRKIL KRQRLL YLS KNRVRYKELI +L+IRE K R
Sbjct:    1 MVKNSFISAISQEEKEKNKGSTEFQILNFTKRIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLTYLSNKNRVRYKELIGQLDIREPKTR 90          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_SOYBN (30S ribosomal protein S15, chloroplastic OS=Glycine max GN=rps15 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.046e-30
Identity = 67/90 (74.44%), Postives = 79/90 (87.78%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKN+ I V  QEKKEKN GSVEFQ+F+FT+ IRRLTSH ELHRKDY SQRGLRKIL KRQRLL+YLSKK+R+RYK+LI++ +IRES+ R
Sbjct:    1 MVKNSIIPVISQEKKEKNPGSVEFQIFKFTDRIRRLTSHFELHRKDYLSQRGLRKILGKRQRLLSYLSKKDRIRYKKLINQFDIRESQIR 90          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_IPOPU (30S ribosomal protein S15, chloroplastic OS=Ipomoea purpurea GN=rps15-A PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.046e-30
Identity = 67/88 (76.14%), Postives = 78/88 (88.64%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781
            MVKN FISV  QE+ ++N GSVEFQ+F FTN I+RLTSHL+LH+KDY SQ+GLRKIL KRQRLLAYLSKKN+VRYKELI KL+IRE+K
Sbjct:    1 MVKNLFISVISQEETKENRGSVEFQIFNFTNKIQRLTSHLKLHKKDYLSQKGLRKILGKRQRLLAYLSKKNKVRYKELIEKLDIRETK 88          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_HELAN (30S ribosomal protein S15, chloroplastic OS=Helianthus annuus GN=rps15 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 1.046e-30
Identity = 70/92 (76.09%), Postives = 79/92 (85.87%), Query Frame = 2
Query:  518 MVKNAFISV--RVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKN+FIS+  + QE+ ++N GSVEFQV  FTN IRRLTSHLELH+KDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI +L+IRE K R
Sbjct:    1 MVKNSFISIILKEQEENKENRGSVEFQVVSFTNKIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELIGQLDIRERKTR 92          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_LEMMI (30S ribosomal protein S15, chloroplastic OS=Lemna minor GN=rps15-A PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.366e-30
Identity = 70/92 (76.09%), Postives = 80/92 (86.96%), Query Frame = 2
Query:  518 MVKNAFISV--RVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKN+FIS+  + QE+KE+N GSVEFQVF FTN IRRLTSHL LH+KD+SSQRGLR IL KRQRLLAYLSKKNRVRYK+LI +L+IRE K R
Sbjct:    1 MVKNSFISIISQEQEEKEENKGSVEFQVFSFTNKIRRLTSHLGLHKKDFSSQRGLRIILGKRQRLLAYLSKKNRVRYKKLIGQLDIREPKTR 92          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_LACSA (30S ribosomal protein S15, chloroplastic OS=Lactuca sativa GN=rps15 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.366e-30
Identity = 70/92 (76.09%), Postives = 78/92 (84.78%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKE--KNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKN+FIS+  QE++E  +N GSVEFQV  FTN IR+LTSHLELH+KDY SQRGLRKIL KRQRLLAYLSKKNR RYKELI +LNIRE K R
Sbjct:    1 MVKNSFISIIFQEQEENKENRGSVEFQVVSFTNKIRKLTSHLELHKKDYLSQRGLRKILGKRQRLLAYLSKKNRARYKELIGQLNIRERKTR 92          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_VITVI (30S ribosomal protein S15, chloroplastic OS=Vitis vinifera GN=rps15 PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 2.330e-30
Identity = 72/90 (80.00%), Postives = 76/90 (84.44%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKN FISV  Q  KE N GSVEFQVF FTN IRRLTSHLELHRKDY SQRGLRKIL KRQRLL+YL+KKNRVRYKELI +L IRE+K R
Sbjct:    1 MVKNLFISVISQ--KEANRGSVEFQVFSFTNKIRRLTSHLELHRKDYLSQRGLRKILGKRQRLLSYLAKKNRVRYKELIGQLGIRETKIR 88          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_TOBAC (30S ribosomal protein S15, chloroplastic OS=Nicotiana tabacum GN=rps15 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 5.191e-30
Identity = 70/90 (77.78%), Postives = 78/90 (86.67%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKN+ ISV  QE+K    GSVEFQVF FTN IRRLTSHLELH+KDY SQRGL+KIL KRQRLLAYLSKKNRVRYKELI++L+IRE+K R
Sbjct:    1 MVKNSVISVISQEEKR---GSVEFQVFNFTNKIRRLTSHLELHKKDYLSQRGLKKILGKRQRLLAYLSKKNRVRYKELINQLDIRETKTR 87          
The following BLAST results are available for this feature:
BLAST of CX078268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
RR15_CUCSA6.133e-3175.5630S ribosomal protein S15, chloroplastic OS=Cucumi... [more]
RR15_ARATH6.133e-3178.8930S ribosomal protein S15, chloroplastic OS=Arabid... [more]
RR15_PIPCE8.009e-3175.5630S ribosomal protein S15, chloroplastic OS=Piper ... [more]
RR15_SOYBN1.046e-3074.4430S ribosomal protein S15, chloroplastic OS=Glycin... [more]
RR15_IPOPU1.046e-3076.1430S ribosomal protein S15, chloroplastic OS=Ipomoe... [more]
RR15_HELAN1.046e-3076.0930S ribosomal protein S15, chloroplastic OS=Helian... [more]
RR15_LEMMI1.366e-3076.0930S ribosomal protein S15, chloroplastic OS=Lemna ... [more]
RR15_LACSA1.366e-3076.0930S ribosomal protein S15, chloroplastic OS=Lactuc... [more]
RR15_VITVI2.330e-3080.0030S ribosomal protein S15, chloroplastic OS=Vitis ... [more]
RR15_TOBAC5.191e-3077.7830S ribosomal protein S15, chloroplastic OS=Nicoti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078268 ID=CX078268; Name=CX078268; organism=Citrus sinensis; type=EST; length=868bp
AGAAAAATCAACTAATTCAATTAAAGTTCTTTATTTGGGCCAATTCTCGA
TTAGAAGATTTAATTTGTATGAATCGGTATTGGTTTAATACCAATAATGG
GAGTCGTTTCAGTATGGTAAGGGTCCATATGTATCCACGATTGAAAATTC
GTTAATAGTGTGCTTTTCCTATCTATCATGTCCCATTTTGGGATATGAAA
ACAAAGAAATGTATACATGTCTTGTCTTCCATTCCAGTCTGATACAAGAT
ACCAAATTAATGGCGAACATTTTAATTAGATCCATAAATGAATCAAGAAA
CTCTTTTTTTTAGGTCCAAATTTTTCTCTTTTGCCGAAATATCCATCCTT
TTAGATGCCTAATCAAATTGAAAATTGGATTGATTATTGATATTGATTTT
CTAGCAAGTTCATAACGAACTTAAGATTATTGTGTATATCAAATTGAAGT
AACTAGTATTATTATTACTGATCAGTAAAATTCATCTTAAAAAAGGAAGG
GGGAGGGGTTTCGTTTTATGGTAAAAAATGCATTCATCTCAGTTAGGGTT
CAAGAAAAAAAAGAAAAAAACAGCGGATCGGTTGAATTTCAAGTATTTCG
TTTCACCAACACGATCCGGAGACTTACTTCACATTTAGAATTGCACAGAA
AAGACTATTCATCTCAAAGGGGTCTACGTAAAATTTTGGAAAAACGCCAA
CGTCTACTAGCTTATTTGTCAAAGAAAAATAGAGTACGTTATAAAGAATT
AATTAGTAAGTTGAATATCCGGGAGTCAAAAAATCGTTAATTTGAAATTT
GAAAAACAATTTCGAATTATTTGATTTTGACTGTTGATGAACTTCTTGTT
GTTTTCAACAATTCATGT
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