CX078268

Overview
NameCX078268
Unique NameCX078268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_PANGI (30S ribosomal protein S15, chloroplastic OS=Panax ginseng GN=rps15 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 2.577e-29
Identity = 65/90 (72.22%), Postives = 75/90 (83.33%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            M+KN F  + ++E+ + N GS EFQV  FTN IRRLTSHLELH+KDY SQRGLRKIL KRQRLLAYLSKKNRVRYKELI +L+IRE+K R
Sbjct:    1 MIKNPFSGIILKEENKDNRGSAEFQVVSFTNRIRRLTSHLELHKKDYLSQRGLRKILGKRQRLLAYLSKKNRVRYKELIGRLDIRETKIR 90          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_PELHO (30S ribosomal protein S15, chloroplastic OS=Pelargonium hortorum GN=rps15-A PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 3.365e-29
Identity = 67/90 (74.44%), Postives = 75/90 (83.33%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVK   ISV  QE+KEKN GSVEFQV  FT  I +++SHL+LHRKDY SQRGL KIL KRQRLL+YLSKKNRVRYKELI++LNIRESK R
Sbjct:    1 MVKTPLISVISQEEKEKNRGSVEFQVLCFTKKIDQISSHLKLHRKDYLSQRGLHKILGKRQRLLSYLSKKNRVRYKELINRLNIRESKTR 90          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_GUIAB (30S ribosomal protein S15, chloroplastic OS=Guizotia abyssinica GN=rps15 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 4.395e-29
Identity = 66/92 (71.74%), Postives = 77/92 (83.70%), Query Frame = 2
Query:  518 MVKNAFISV--RVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            M+KN+F S+  + QE+ ++N GSVEFQV  FTN IR+LTSHLELH+KDY SQRGLRKIL KRQRLLAYLSKKNR RYKELI +L+IRE K R
Sbjct:    1 MLKNSFFSIILKEQEENKENRGSVEFQVVSFTNKIRKLTSHLELHKKDYLSQRGLRKILGKRQRLLAYLSKKNRARYKELIGQLDIRERKTR 92          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_PHAAO (30S ribosomal protein S15, chloroplastic OS=Phalaenopsis aphrodite subsp. formosana GN=rps15 PE=3 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 5.740e-29
Identity = 64/86 (74.42%), Postives = 75/86 (87.21%), Query Frame = 2
Query:  524 KNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781
            KN+FISV  QE+KE+NSGSVEFQVF FT+ IRRLTSHLELH++D+ SQ+GLR IL KRQRLL YLSKKN+VRYK+L  +LNIRE K
Sbjct:    4 KNSFISVITQEEKEENSGSVEFQVFHFTSKIRRLTSHLELHKRDFLSQKGLRIILGKRQRLLTYLSKKNKVRYKKLTDQLNIREPK 89          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_ILLOL (30S ribosomal protein S15, chloroplastic OS=Illicium oligandrum GN=rps15 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 2.181e-28
Identity = 69/88 (78.41%), Postives = 75/88 (85.23%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781
            MVK +FI V  QE+K+   GSVEFQV  FTN IRRLTSHLELHRKDY SQRGLR+IL KRQRLLAYLSKKNRVRYKELIS+L+IRE K
Sbjct:    1 MVKKSFILVIPQEEKK---GSVEFQVSSFTNKIRRLTSHLELHRKDYLSQRGLRRILGKRQRLLAYLSKKNRVRYKELISQLDIREPK 85          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_JASNU (30S ribosomal protein S15, chloroplastic OS=Jasminum nudiflorum GN=rps15 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.849e-28
Identity = 65/93 (69.89%), Postives = 79/93 (84.95%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKE---LISKLNIRESKNR 787
            MV+N+FIS+  Q++ ++N GSVEFQV  FT  IRRLTSHL+LH+ DYSS+RGLRKIL KRQR+LAYLSKKNRVRY+E   LIS+LNIRE+K R
Sbjct:    1 MVRNSFISIISQKENKENRGSVEFQVLSFTTKIRRLTSHLKLHKTDYSSERGLRKILGKRQRVLAYLSKKNRVRYQELQDLISQLNIRETKTR 93          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_PHAVU (30S ribosomal protein S15, chloroplastic OS=Phaseolus vulgaris GN=rps15 PE=3 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 4.859e-28
Identity = 63/90 (70.00%), Postives = 76/90 (84.44%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKN+FI V  QEKK KN G VEFQ+F+FTN IRRLTSH ELH KDYSSQ GLRKIL KRQRLL+YLSKK+ ++YK+LI++ +IR+S+ R
Sbjct:    1 MVKNSFIPVLSQEKKGKNPGLVEFQIFQFTNRIRRLTSHFELHPKDYSSQTGLRKILGKRQRLLSYLSKKDGIQYKKLINQFDIRQSQIR 90          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_NYMAL (30S ribosomal protein S15, chloroplastic OS=Nymphaea alba GN=rps15 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.414e-27
Identity = 67/88 (76.14%), Postives = 72/88 (81.82%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781
            MVKN+ ISV  QE+K    GSVEFQVF FTN I RLTSHLELHR+DY SQRGLRKIL KRQRLL YLSKKNRVRY+ELI +L IRE K
Sbjct:    1 MVKNSPISVIPQEEKR---GSVEFQVFNFTNKIERLTSHLELHRRDYLSQRGLRKILGKRQRLLVYLSKKNRVRYRELIGQLGIREPK 85          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_OENPA (30S ribosomal protein S15, chloroplastic OS=Oenothera parviflora GN=rps15 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.412e-27
Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKNAFISV  QE+   N GSVEFQV  FTN IRRLTSHLE HRKD+ SQRGLRKIL KRQRLL+YLSKK++VRY ELIS+L+IRE   R
Sbjct:    1 MVKNAFISVISQEE---NRGSVEFQVVSFTNKIRRLTSHLEFHRKDFLSQRGLRKILGKRQRLLSYLSKKDKVRYTELISQLDIRELTTR 87          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_OENGL (30S ribosomal protein S15, chloroplastic OS=Oenothera glazioviana GN=rps15 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 2.412e-27
Identity = 67/90 (74.44%), Postives = 74/90 (82.22%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVKNAFISV  QE+   N GSVEFQV  FTN IRRLTSHLE HRKD+ SQRGLRKIL KRQRLL+YLSKK++VRY ELIS+L+IRE   R
Sbjct:    1 MVKNAFISVISQEE---NRGSVEFQVVSFTNKIRRLTSHLEFHRKDFLSQRGLRKILGKRQRLLSYLSKKDKVRYTELISQLDIRELTTR 87          
The following BLAST results are available for this feature:
BLAST of CX078268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
RR15_PANGI2.577e-2972.2230S ribosomal protein S15, chloroplastic OS=Panax ... [more]
RR15_PELHO3.365e-2974.4430S ribosomal protein S15, chloroplastic OS=Pelarg... [more]
RR15_GUIAB4.395e-2971.7430S ribosomal protein S15, chloroplastic OS=Guizot... [more]
RR15_PHAAO5.740e-2974.4230S ribosomal protein S15, chloroplastic OS=Phalae... [more]
RR15_ILLOL2.181e-2878.4130S ribosomal protein S15, chloroplastic OS=Illici... [more]
RR15_JASNU2.849e-2869.8930S ribosomal protein S15, chloroplastic OS=Jasmin... [more]
RR15_PHAVU4.859e-2870.0030S ribosomal protein S15, chloroplastic OS=Phaseo... [more]
RR15_NYMAL1.414e-2776.1430S ribosomal protein S15, chloroplastic OS=Nympha... [more]
RR15_OENPA2.412e-2774.4430S ribosomal protein S15, chloroplastic OS=Oenoth... [more]
RR15_OENGL2.412e-2774.4430S ribosomal protein S15, chloroplastic OS=Oenoth... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078268 ID=CX078268; Name=CX078268; organism=Citrus sinensis; type=EST; length=868bp
AGAAAAATCAACTAATTCAATTAAAGTTCTTTATTTGGGCCAATTCTCGA
TTAGAAGATTTAATTTGTATGAATCGGTATTGGTTTAATACCAATAATGG
GAGTCGTTTCAGTATGGTAAGGGTCCATATGTATCCACGATTGAAAATTC
GTTAATAGTGTGCTTTTCCTATCTATCATGTCCCATTTTGGGATATGAAA
ACAAAGAAATGTATACATGTCTTGTCTTCCATTCCAGTCTGATACAAGAT
ACCAAATTAATGGCGAACATTTTAATTAGATCCATAAATGAATCAAGAAA
CTCTTTTTTTTAGGTCCAAATTTTTCTCTTTTGCCGAAATATCCATCCTT
TTAGATGCCTAATCAAATTGAAAATTGGATTGATTATTGATATTGATTTT
CTAGCAAGTTCATAACGAACTTAAGATTATTGTGTATATCAAATTGAAGT
AACTAGTATTATTATTACTGATCAGTAAAATTCATCTTAAAAAAGGAAGG
GGGAGGGGTTTCGTTTTATGGTAAAAAATGCATTCATCTCAGTTAGGGTT
CAAGAAAAAAAAGAAAAAAACAGCGGATCGGTTGAATTTCAAGTATTTCG
TTTCACCAACACGATCCGGAGACTTACTTCACATTTAGAATTGCACAGAA
AAGACTATTCATCTCAAAGGGGTCTACGTAAAATTTTGGAAAAACGCCAA
CGTCTACTAGCTTATTTGTCAAAGAAAAATAGAGTACGTTATAAAGAATT
AATTAGTAAGTTGAATATCCGGGAGTCAAAAAATCGTTAATTTGAAATTT
GAAAAACAATTTCGAATTATTTGATTTTGACTGTTGATGAACTTCTTGTT
GTTTTCAACAATTCATGT
back to top