CX078268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_SACHY (30S ribosomal protein S15, chloroplastic OS=Saccharum hybrid GN=rps15-A PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26 Identity = 58/76 (76.32%), Postives = 71/76 (93.42%), Query Frame = 2 Query: 548 VQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 775 V+E+K++N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR++L KRQRLLAYL+KKNRVRYK+LIS+L+IRE Sbjct: 2 VKEEKQENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRQRLLAYLAKKNRVRYKKLISQLDIRE 77
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_OENEH (30S ribosomal protein S15, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps15 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26 Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 MVK AFISV QE+ N GSVEFQV FTN IRRLTSHLE HRKD+ SQRGLRKIL KRQRLL+YLSKK++VRY ELIS+L+IRE R Sbjct: 1 MVKKAFISVISQEE---NRGSVEFQVVSFTNKIRRLTSHLEFHRKDFLSQRGLRKILGKRQRLLSYLSKKDKVRYTELISQLDIRELTTR 87
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_OENBI (30S ribosomal protein S15, chloroplastic OS=Oenothera biennis GN=rps15 PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26 Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 MVK AFISV QE+ N GSVEFQV FTN IRRLTSHLE HRKD+ SQRGLRKIL KRQRLL+YLSKK++VRY ELIS+L+IRE R Sbjct: 1 MVKKAFISVISQEE---NRGSVEFQVVSFTNKIRRLTSHLEFHRKDFLSQRGLRKILGKRQRLLSYLSKKDKVRYTELISQLDIRELTTR 87
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_HORVU (30S ribosomal protein S15, chloroplastic OS=Hordeum vulgare GN=rps15-A PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26 Identity = 58/76 (76.32%), Postives = 70/76 (92.11%), Query Frame = 2 Query: 548 VQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 775 V+E+KE+N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR++L KR+RLLAYL+KKNRVRYK+LI +LNIRE Sbjct: 14 VKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIRE 89
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_BRADI (30S ribosomal protein S15, chloroplastic OS=Brachypodium distachyon GN=rps15-A PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26 Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 2 Query: 491 KRKG--EGFRFMVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 775 K+KG + F FMVK E+KE+ GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR++L KR+RLLAYL+KKNRVRYK+LIS+LNIRE Sbjct: 2 KKKGGRKIFGFMVK---------EEKEEKKGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLISQLNIRE 89
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_AGRST (30S ribosomal protein S15, chloroplastic OS=Agrostis stolonifera GN=rps15-A PE=3 SV=1) HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26 Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 2 Query: 536 ISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 775 + V+E+KE+N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR +L KR+RLLAYL+KKNRVRYK+LIS+LNIRE Sbjct: 10 VGFMVKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRILLGKRRRLLAYLAKKNRVRYKKLISQLNIRE 89
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_LOLPR (30S ribosomal protein S15, chloroplastic OS=Lolium perenne GN=rps15-A PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26 Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 2 Query: 548 VQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 775 V+E+KE+N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR +L KR+RLLAYL+KKNRVRYK+LIS+LNIRE Sbjct: 14 VKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRILLGKRRRLLAYLAKKNRVRYKKLISQLNIRE 89
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CUSEX (30S ribosomal protein S15, plastid OS=Cuscuta exaltata GN=rps15 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 3.482e-26 Identity = 58/88 (65.91%), Postives = 74/88 (84.09%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781 MVKN I V Q++ ++N GSVEFQ+F FT IRRLTSHL+LH+KD+ SQ+GLRKIL KRQRLLAYLSKK+++RYK+LI KL +R++K Sbjct: 1 MVKNLSIWVISQKENKENRGSVEFQIFNFTKKIRRLTSHLKLHKKDFLSQKGLRKILGKRQRLLAYLSKKSKIRYKDLIDKLELRDTK 88
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_FAGEA (30S ribosomal protein S15, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps15 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.548e-26 Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781 M KN+ IS +E+ GS FQVF FTN IRRL++HLELH+KDYSSQRGLRKIL KRQRLLAY SKKNRVRYKELI++LNIRE K Sbjct: 1 MKKNSVIS------QEEKKGSAAFQVFGFTNKIRRLSAHLELHKKDYSSQRGLRKILGKRQRLLAYFSKKNRVRYKELINQLNIREIK 82
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_AMBTC (30S ribosomal protein S15, chloroplastic OS=Amborella trichopoda GN=rps15 PE=3 SV=1) HSP 1 Score: 118.627 bits (296), Expect = 4.548e-26 Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 MV N+FIS KE+ GSVEFQVF FT+ IR+LTSHLELH+KD+ SQRG+RKIL KRQR+LAYLS KN+VRYK+LI +LNIRE K R Sbjct: 1 MVINSFIS---SISKEEKKGSVEFQVFCFTDKIRKLTSHLELHKKDFLSQRGMRKILGKRQRMLAYLSNKNKVRYKKLIGQLNIREPKTR 87 The following BLAST results are available for this feature:
BLAST of CX078268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 220
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078268 ID=CX078268; Name=CX078268; organism=Citrus sinensis; type=EST; length=868bpback to top |