CX078268

Overview
NameCX078268
Unique NameCX078268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_SACHY (30S ribosomal protein S15, chloroplastic OS=Saccharum hybrid GN=rps15-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 58/76 (76.32%), Postives = 71/76 (93.42%), Query Frame = 2
Query:  548 VQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 775
            V+E+K++N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR++L KRQRLLAYL+KKNRVRYK+LIS+L+IRE
Sbjct:    2 VKEEKQENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRQRLLAYLAKKNRVRYKKLISQLDIRE 77          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_OENEH (30S ribosomal protein S15, chloroplastic OS=Oenothera elata subsp. hookeri GN=rps15 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVK AFISV  QE+   N GSVEFQV  FTN IRRLTSHLE HRKD+ SQRGLRKIL KRQRLL+YLSKK++VRY ELIS+L+IRE   R
Sbjct:    1 MVKKAFISVISQEE---NRGSVEFQVVSFTNKIRRLTSHLEFHRKDFLSQRGLRKILGKRQRLLSYLSKKDKVRYTELISQLDIRELTTR 87          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_OENBI (30S ribosomal protein S15, chloroplastic OS=Oenothera biennis GN=rps15 PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 66/90 (73.33%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MVK AFISV  QE+   N GSVEFQV  FTN IRRLTSHLE HRKD+ SQRGLRKIL KRQRLL+YLSKK++VRY ELIS+L+IRE   R
Sbjct:    1 MVKKAFISVISQEE---NRGSVEFQVVSFTNKIRRLTSHLEFHRKDFLSQRGLRKILGKRQRLLSYLSKKDKVRYTELISQLDIRELTTR 87          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_HORVU (30S ribosomal protein S15, chloroplastic OS=Hordeum vulgare GN=rps15-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 58/76 (76.32%), Postives = 70/76 (92.11%), Query Frame = 2
Query:  548 VQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 775
            V+E+KE+N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR++L KR+RLLAYL+KKNRVRYK+LI +LNIRE
Sbjct:   14 VKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLIGQLNIRE 89          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_BRADI (30S ribosomal protein S15, chloroplastic OS=Brachypodium distachyon GN=rps15-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 65/97 (67.01%), Postives = 78/97 (80.41%), Query Frame = 2
Query:  491 KRKG--EGFRFMVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 775
            K+KG  + F FMVK         E+KE+  GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR++L KR+RLLAYL+KKNRVRYK+LIS+LNIRE
Sbjct:    2 KKKGGRKIFGFMVK---------EEKEEKKGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRRLLGKRRRLLAYLAKKNRVRYKKLISQLNIRE 89          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_AGRST (30S ribosomal protein S15, chloroplastic OS=Agrostis stolonifera GN=rps15-A PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 59/80 (73.75%), Postives = 71/80 (88.75%), Query Frame = 2
Query:  536 ISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 775
            +   V+E+KE+N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR +L KR+RLLAYL+KKNRVRYK+LIS+LNIRE
Sbjct:   10 VGFMVKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRILLGKRRRLLAYLAKKNRVRYKKLISQLNIRE 89          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_LOLPR (30S ribosomal protein S15, chloroplastic OS=Lolium perenne GN=rps15-A PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.563e-26
Identity = 59/76 (77.63%), Postives = 70/76 (92.11%), Query Frame = 2
Query:  548 VQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRE 775
            V+E+KE+N GSVEFQVF FTN IRRL SHLELH+KD+SS+RGLR +L KR+RLLAYL+KKNRVRYK+LIS+LNIRE
Sbjct:   14 VKEEKEENRGSVEFQVFSFTNKIRRLASHLELHKKDFSSERGLRILLGKRRRLLAYLAKKNRVRYKKLISQLNIRE 89          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CUSEX (30S ribosomal protein S15, plastid OS=Cuscuta exaltata GN=rps15 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 3.482e-26
Identity = 58/88 (65.91%), Postives = 74/88 (84.09%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781
            MVKN  I V  Q++ ++N GSVEFQ+F FT  IRRLTSHL+LH+KD+ SQ+GLRKIL KRQRLLAYLSKK+++RYK+LI KL +R++K
Sbjct:    1 MVKNLSIWVISQKENKENRGSVEFQIFNFTKKIRRLTSHLKLHKKDFLSQKGLRKILGKRQRLLAYLSKKSKIRYKDLIDKLELRDTK 88          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_FAGEA (30S ribosomal protein S15, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps15 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.548e-26
Identity = 63/88 (71.59%), Postives = 71/88 (80.68%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781
            M KN+ IS      +E+  GS  FQVF FTN IRRL++HLELH+KDYSSQRGLRKIL KRQRLLAY SKKNRVRYKELI++LNIRE K
Sbjct:    1 MKKNSVIS------QEEKKGSAAFQVFGFTNKIRRLSAHLELHKKDYSSQRGLRKILGKRQRLLAYFSKKNRVRYKELINQLNIREIK 82          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_AMBTC (30S ribosomal protein S15, chloroplastic OS=Amborella trichopoda GN=rps15 PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 4.548e-26
Identity = 62/90 (68.89%), Postives = 73/90 (81.11%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            MV N+FIS      KE+  GSVEFQVF FT+ IR+LTSHLELH+KD+ SQRG+RKIL KRQR+LAYLS KN+VRYK+LI +LNIRE K R
Sbjct:    1 MVINSFIS---SISKEEKKGSVEFQVFCFTDKIRKLTSHLELHKKDFLSQRGMRKILGKRQRMLAYLSNKNKVRYKKLIGQLNIREPKTR 87          
The following BLAST results are available for this feature:
BLAST of CX078268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
RR15_SACHY1.197e-2676.3230S ribosomal protein S15, chloroplastic OS=Saccha... [more]
RR15_OENEH1.197e-2673.3330S ribosomal protein S15, chloroplastic OS=Oenoth... [more]
RR15_OENBI1.197e-2673.3330S ribosomal protein S15, chloroplastic OS=Oenoth... [more]
RR15_HORVU1.197e-2676.3230S ribosomal protein S15, chloroplastic OS=Hordeu... [more]
RR15_BRADI1.197e-2667.0130S ribosomal protein S15, chloroplastic OS=Brachy... [more]
RR15_AGRST1.197e-2673.7530S ribosomal protein S15, chloroplastic OS=Agrost... [more]
RR15_LOLPR1.563e-2677.6330S ribosomal protein S15, chloroplastic OS=Lolium... [more]
RR15_CUSEX3.482e-2665.9130S ribosomal protein S15, plastid OS=Cuscuta exal... [more]
RR15_FAGEA4.548e-2671.5930S ribosomal protein S15, chloroplastic OS=Fagopy... [more]
RR15_AMBTC4.548e-2668.8930S ribosomal protein S15, chloroplastic OS=Ambore... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078268 ID=CX078268; Name=CX078268; organism=Citrus sinensis; type=EST; length=868bp
AGAAAAATCAACTAATTCAATTAAAGTTCTTTATTTGGGCCAATTCTCGA
TTAGAAGATTTAATTTGTATGAATCGGTATTGGTTTAATACCAATAATGG
GAGTCGTTTCAGTATGGTAAGGGTCCATATGTATCCACGATTGAAAATTC
GTTAATAGTGTGCTTTTCCTATCTATCATGTCCCATTTTGGGATATGAAA
ACAAAGAAATGTATACATGTCTTGTCTTCCATTCCAGTCTGATACAAGAT
ACCAAATTAATGGCGAACATTTTAATTAGATCCATAAATGAATCAAGAAA
CTCTTTTTTTTAGGTCCAAATTTTTCTCTTTTGCCGAAATATCCATCCTT
TTAGATGCCTAATCAAATTGAAAATTGGATTGATTATTGATATTGATTTT
CTAGCAAGTTCATAACGAACTTAAGATTATTGTGTATATCAAATTGAAGT
AACTAGTATTATTATTACTGATCAGTAAAATTCATCTTAAAAAAGGAAGG
GGGAGGGGTTTCGTTTTATGGTAAAAAATGCATTCATCTCAGTTAGGGTT
CAAGAAAAAAAAGAAAAAAACAGCGGATCGGTTGAATTTCAAGTATTTCG
TTTCACCAACACGATCCGGAGACTTACTTCACATTTAGAATTGCACAGAA
AAGACTATTCATCTCAAAGGGGTCTACGTAAAATTTTGGAAAAACGCCAA
CGTCTACTAGCTTATTTGTCAAAGAAAAATAGAGTACGTTATAAAGAATT
AATTAGTAAGTTGAATATCCGGGAGTCAAAAAATCGTTAATTTGAAATTT
GAAAAACAATTTCGAATTATTTGATTTTGACTGTTGATGAACTTCTTGTT
GTTTTCAACAATTCATGT
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