CX078268
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CUSRE (30S ribosomal protein S15, plastid OS=Cuscuta reflexa GN=rps15 PE=3 SV=1) HSP 1 Score: 111.309 bits (277), Expect = 7.261e-24 Identity = 55/88 (62.50%), Postives = 71/88 (80.68%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781 MVKN ISV +++ ++N GS+EFQ+ FT IRRLTSHL+LH+KD+ SQ+GLRKIL KR RLLAYLSKK ++ YK+LI KL IR++K Sbjct: 1 MVKNFSISVISKKENKENRGSIEFQILNFTKKIRRLTSHLKLHKKDFLSQKGLRKILGKRHRLLAYLSKKLKICYKDLIEKLEIRDTK 88
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_CITSI (Putative membrane protein ycf1 OS=Citrus sinensis GN=ycf1-A PE=3 SV=1) HSP 1 Score: 109.383 bits (272), Expect = 2.743e-23 Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 3 Query: 3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR Sbjct: 1780 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 1829
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_TRACE (30S ribosomal protein S15, chloroplastic OS=Trachelium caeruleum GN=rps15-A PE=3 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 8.028e-23 Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKE 748 MVKN+FIS+ QE+ ++N GSVEFQ+ FTN I RLTSHL+LH+KDY S+RGL KIL KR RLLAYLSKK RV YKE Sbjct: 1 MVKNSFISIISQEENKENRGSVEFQIVSFTNKIDRLTSHLQLHKKDYLSERGLLKILGKRHRLLAYLSKKTRVDYKE 77
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CICAR (30S ribosomal protein S15, chloroplastic OS=Cicer arietinum GN=rps15 PE=3 SV=1) HSP 1 Score: 105.145 bits (261), Expect = 5.204e-22 Identity = 55/91 (60.44%), Postives = 72/91 (79.12%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEK-NSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 M+KN FI Q+KKE+ N GSVEFQV FTN IR+LTSH +LH KDY SQRGLRKIL KRQ LL+YL ++++ R+++L+S+LN R+S+ R Sbjct: 1 MIKNLFIPFISQKKKEEENPGSVEFQVVNFTNKIRKLTSHFKLHPKDYLSQRGLRKILGKRQGLLSYLLERDKRRFEKLMSELNTRDSQIR 91
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_PHYPA (30S ribosomal protein S15, chloroplastic OS=Physcomitrella patens GN=rps15 PE=3 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.417e-19 Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787 M K FI + K++ +GSVEFQ+ TN + +LT HL+ H KDYSSQRGL KIL KR+RLL+YLSK N Y+ LI+KLNIR+ KNR Sbjct: 1 MSKKLFIGSSLLSKEQ--TGSVEFQISHLTNRVLKLTDHLKFHDKDYSSQRGLLKILGKRKRLLSYLSKTNLTSYETLINKLNIRKLKNR 88
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CUSOB (30S ribosomal protein S15, plastid OS=Cuscuta obtusiflora GN=rps15 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 4.123e-19 Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781 M K FIS + +N+GS++FQ+ FT I +LT+HL+LH+KDY SQRGLR++L KRQRLL+YLSK N Y +LI KL IRE+K Sbjct: 1 MTKTIFISTK------ENTGSIQFQIVNFTKKICKLTNHLKLHKKDYLSQRGLRQMLGKRQRLLSYLSKINLTSYNDLILKLKIREAK 82
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CUSGR (30S ribosomal protein S15, plastid OS=Cuscuta gronovii GN=rps15 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 5.385e-19 Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2 Query: 518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781 M K FIS + +N+GS+EFQ+ FT I +LT HL+LH+KDY SQRGLR++L KRQRLL YLSK N Y +LI KL IRE+K Sbjct: 1 MTKTIFISTK------ENTGSIEFQIVNFTKKICKLTDHLKLHKKDYLSQRGLRQMLGKRQRLLVYLSKINLPSYNDLILKLKIREAK 82
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_GOSHI (Putative membrane protein ycf1 OS=Gossypium hirsutum GN=ycf1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.034e-18 Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 3 Query: 3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152 K +LI+LKFF+W N RLEDL CMNRYWFNTNNGSRFSM+R+ MYPRLKIR Sbjct: 1843 KKKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMIRIRMYPRLKIR 1892
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_GOSBA (Putative membrane protein ycf1 OS=Gossypium barbadense GN=ycf1 PE=3 SV=1) HSP 1 Score: 93.2041 bits (230), Expect = 2.034e-18 Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 3 Query: 3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152 K +LI+LKFF+W N RLEDL CMNRYWFNTNNGSRFSM+R+ MYPRLKIR Sbjct: 1840 KKKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMIRIRMYPRLKIR 1889
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_NICTO (Putative membrane protein ycf1 OS=Nicotiana tomentosiformis GN=ycf1-A PE=3 SV=1) HSP 1 Score: 92.8189 bits (229), Expect = 2.657e-18 Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 3 Query: 3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 149 KN+LI+LKFF+W N RLEDL CMNRYWF+TNNGSRFS++R+HMYPRLKI Sbjct: 1843 KNELIKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1891 The following BLAST results are available for this feature:
BLAST of CX078268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 220
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078268 ID=CX078268; Name=CX078268; organism=Citrus sinensis; type=EST; length=868bpback to top |