CX078268

Overview
NameCX078268
Unique NameCX078268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CUSRE (30S ribosomal protein S15, plastid OS=Cuscuta reflexa GN=rps15 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 7.261e-24
Identity = 55/88 (62.50%), Postives = 71/88 (80.68%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781
            MVKN  ISV  +++ ++N GS+EFQ+  FT  IRRLTSHL+LH+KD+ SQ+GLRKIL KR RLLAYLSKK ++ YK+LI KL IR++K
Sbjct:    1 MVKNFSISVISKKENKENRGSIEFQILNFTKKIRRLTSHLKLHKKDFLSQKGLRKILGKRHRLLAYLSKKLKICYKDLIEKLEIRDTK 88          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_CITSI (Putative membrane protein ycf1 OS=Citrus sinensis GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.743e-23
Identity = 50/50 (100.00%), Postives = 50/50 (100.00%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152
            KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR
Sbjct: 1780 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 1829          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_TRACE (30S ribosomal protein S15, chloroplastic OS=Trachelium caeruleum GN=rps15-A PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 8.028e-23
Identity = 54/77 (70.13%), Postives = 63/77 (81.82%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKE 748
            MVKN+FIS+  QE+ ++N GSVEFQ+  FTN I RLTSHL+LH+KDY S+RGL KIL KR RLLAYLSKK RV YKE
Sbjct:    1 MVKNSFISIISQEENKENRGSVEFQIVSFTNKIDRLTSHLQLHKKDYLSERGLLKILGKRHRLLAYLSKKTRVDYKE 77          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CICAR (30S ribosomal protein S15, chloroplastic OS=Cicer arietinum GN=rps15 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 5.204e-22
Identity = 55/91 (60.44%), Postives = 72/91 (79.12%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEK-NSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            M+KN FI    Q+KKE+ N GSVEFQV  FTN IR+LTSH +LH KDY SQRGLRKIL KRQ LL+YL ++++ R+++L+S+LN R+S+ R
Sbjct:    1 MIKNLFIPFISQKKKEEENPGSVEFQVVNFTNKIRKLTSHFKLHPKDYLSQRGLRKILGKRQGLLSYLLERDKRRFEKLMSELNTRDSQIR 91          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_PHYPA (30S ribosomal protein S15, chloroplastic OS=Physcomitrella patens GN=rps15 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.417e-19
Identity = 51/90 (56.67%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            M K  FI   +  K++  +GSVEFQ+   TN + +LT HL+ H KDYSSQRGL KIL KR+RLL+YLSK N   Y+ LI+KLNIR+ KNR
Sbjct:    1 MSKKLFIGSSLLSKEQ--TGSVEFQISHLTNRVLKLTDHLKFHDKDYSSQRGLLKILGKRKRLLSYLSKTNLTSYETLINKLNIRKLKNR 88          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CUSOB (30S ribosomal protein S15, plastid OS=Cuscuta obtusiflora GN=rps15 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 4.123e-19
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781
            M K  FIS +      +N+GS++FQ+  FT  I +LT+HL+LH+KDY SQRGLR++L KRQRLL+YLSK N   Y +LI KL IRE+K
Sbjct:    1 MTKTIFISTK------ENTGSIQFQIVNFTKKICKLTNHLKLHKKDYLSQRGLRQMLGKRQRLLSYLSKINLTSYNDLILKLKIREAK 82          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_CUSGR (30S ribosomal protein S15, plastid OS=Cuscuta gronovii GN=rps15 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.385e-19
Identity = 50/88 (56.82%), Postives = 62/88 (70.45%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781
            M K  FIS +      +N+GS+EFQ+  FT  I +LT HL+LH+KDY SQRGLR++L KRQRLL YLSK N   Y +LI KL IRE+K
Sbjct:    1 MTKTIFISTK------ENTGSIEFQIVNFTKKICKLTDHLKLHKKDYLSQRGLRQMLGKRQRLLVYLSKINLPSYNDLILKLKIREAK 82          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_GOSHI (Putative membrane protein ycf1 OS=Gossypium hirsutum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.034e-18
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152
            K +LI+LKFF+W N RLEDL CMNRYWFNTNNGSRFSM+R+ MYPRLKIR
Sbjct: 1843 KKKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMIRIRMYPRLKIR 1892          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_GOSBA (Putative membrane protein ycf1 OS=Gossypium barbadense GN=ycf1 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 2.034e-18
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152
            K +LI+LKFF+W N RLEDL CMNRYWFNTNNGSRFSM+R+ MYPRLKIR
Sbjct: 1840 KKKLIKLKFFLWPNYRLEDLACMNRYWFNTNNGSRFSMIRIRMYPRLKIR 1889          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_NICTO (Putative membrane protein ycf1 OS=Nicotiana tomentosiformis GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.657e-18
Identity = 39/49 (79.59%), Postives = 46/49 (93.88%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 149
            KN+LI+LKFF+W N RLEDL CMNRYWF+TNNGSRFS++R+HMYPRLKI
Sbjct: 1843 KNELIKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1891          
The following BLAST results are available for this feature:
BLAST of CX078268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
RR15_CUSRE7.261e-2462.5030S ribosomal protein S15, plastid OS=Cuscuta refl... [more]
YCF1_CITSI2.743e-23100.00Putative membrane protein ycf1 OS=Citrus sinensis ... [more]
RR15_TRACE8.028e-2370.1330S ribosomal protein S15, chloroplastic OS=Trache... [more]
RR15_CICAR5.204e-2260.4430S ribosomal protein S15, chloroplastic OS=Cicer ... [more]
RR15_PHYPA2.417e-1956.6730S ribosomal protein S15, chloroplastic OS=Physco... [more]
RR15_CUSOB4.123e-1955.6830S ribosomal protein S15, plastid OS=Cuscuta obtu... [more]
RR15_CUSGR5.385e-1956.8230S ribosomal protein S15, plastid OS=Cuscuta gron... [more]
YCF1_GOSHI2.034e-1880.00Putative membrane protein ycf1 OS=Gossypium hirsut... [more]
YCF1_GOSBA2.034e-1880.00Putative membrane protein ycf1 OS=Gossypium barbad... [more]
YCF1_NICTO2.657e-1879.59Putative membrane protein ycf1 OS=Nicotiana toment... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078268 ID=CX078268; Name=CX078268; organism=Citrus sinensis; type=EST; length=868bp
AGAAAAATCAACTAATTCAATTAAAGTTCTTTATTTGGGCCAATTCTCGA
TTAGAAGATTTAATTTGTATGAATCGGTATTGGTTTAATACCAATAATGG
GAGTCGTTTCAGTATGGTAAGGGTCCATATGTATCCACGATTGAAAATTC
GTTAATAGTGTGCTTTTCCTATCTATCATGTCCCATTTTGGGATATGAAA
ACAAAGAAATGTATACATGTCTTGTCTTCCATTCCAGTCTGATACAAGAT
ACCAAATTAATGGCGAACATTTTAATTAGATCCATAAATGAATCAAGAAA
CTCTTTTTTTTAGGTCCAAATTTTTCTCTTTTGCCGAAATATCCATCCTT
TTAGATGCCTAATCAAATTGAAAATTGGATTGATTATTGATATTGATTTT
CTAGCAAGTTCATAACGAACTTAAGATTATTGTGTATATCAAATTGAAGT
AACTAGTATTATTATTACTGATCAGTAAAATTCATCTTAAAAAAGGAAGG
GGGAGGGGTTTCGTTTTATGGTAAAAAATGCATTCATCTCAGTTAGGGTT
CAAGAAAAAAAAGAAAAAAACAGCGGATCGGTTGAATTTCAAGTATTTCG
TTTCACCAACACGATCCGGAGACTTACTTCACATTTAGAATTGCACAGAA
AAGACTATTCATCTCAAAGGGGTCTACGTAAAATTTTGGAAAAACGCCAA
CGTCTACTAGCTTATTTGTCAAAGAAAAATAGAGTACGTTATAAAGAATT
AATTAGTAAGTTGAATATCCGGGAGTCAAAAAATCGTTAATTTGAAATTT
GAAAAACAATTTCGAATTATTTGATTTTGACTGTTGATGAACTTCTTGTT
GTTTTCAACAATTCATGT
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