CX078268

Overview
NameCX078268
Unique NameCX078268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length868
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_PINTH (30S ribosomal protein S15, chloroplastic OS=Pinus thunbergii GN=rps15 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.559e-18
Identity = 49/90 (54.44%), Postives = 64/90 (71.11%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            M+ N  IS  +   K++  GSVE QVF  TN + RLT HL+LH +DYSSQRGL KIL KR++LL YLSK++++RY +LI +L IR  K R
Sbjct:    1 MINNLSISSSLIPDKQR--GSVESQVFYLTNRVLRLTQHLQLHGRDYSSQRGLWKILSKRKQLLVYLSKRDKLRYDDLIGQLGIRGLKTR 88          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_PINKO (30S ribosomal protein S15, chloroplastic OS=Pinus koraiensis GN=rps15 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.559e-18
Identity = 49/90 (54.44%), Postives = 65/90 (72.22%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESKNR 787
            M+KN  IS  +   K++  GSVE QVF  TN + RLT HL+LH +DYSSQRGL  IL KR++LL YLSK++++RY +LI +L+IR  K R
Sbjct:    1 MIKNLSISSSLIPDKQR--GSVESQVFFLTNRVLRLTQHLQLHGRDYSSQRGLWLILSKRKQLLVYLSKRDKLRYDDLIGQLSIRRLKTR 88          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_TOBAC (Putative membrane protein ycf1 OS=Nicotiana tabacum GN=ycf1 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 38/49 (77.55%), Postives = 46/49 (93.88%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 149
            KN+LI+LKFF+W N RLEDL CMNRYWF+TNNGSRFS++R+HMYP+LKI
Sbjct: 1852 KNELIKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPQLKI 1900          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_SOLBU (Putative membrane protein ycf1 OS=Solanum bulbocastanum GN=ycf1 PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 149
            KN+LI+ KFF+W N RLEDL CMNRYWF+TNNGSRFS++R+HMYPRLKI
Sbjct: 1838 KNELIKFKFFLWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1886          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_NICSY (Putative membrane protein ycf1 OS=Nicotiana sylvestris GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.731e-18
Identity = 38/49 (77.55%), Postives = 46/49 (93.88%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 149
            KN+LI+LKFF+W N RLEDL CMNRYWF+TNNGSRFS++R+HMYP+LKI
Sbjct: 1852 KNELIKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPQLKI 1900          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_ATRBE (Putative membrane protein ycf1 OS=Atropa belladonna GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.010e-17
Identity = 38/49 (77.55%), Postives = 45/49 (91.84%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 149
            KN+LI+LKFF+W N RLEDL CMNRYWF+ NNGSRFS++R+HMYPRLKI
Sbjct: 1831 KNELIKLKFFLWPNYRLEDLACMNRYWFDNNNGSRFSILRIHMYPRLKI 1879          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: RR15_MARPO (30S ribosomal protein S15, chloroplastic OS=Marchantia polymorpha GN=rps15 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.016e-17
Identity = 51/88 (57.95%), Postives = 61/88 (69.32%), Query Frame = 2
Query:  518 MVKNAFISVRVQEKKEKNSGSVEFQVFRFTNTIRRLTSHLELHRKDYSSQRGLRKILEKRQRLLAYLSKKNRVRYKELISKLNIRESK 781
            M KN F+ +    +KEK  GSVEFQ+FR TN + +LT H + H KDYSSQRGL KIL KR+RLLAYL K N V Y+ LI +L IR  K
Sbjct:    1 MSKNLFMDLSSISEKEK--GSVEFQIFRLTNRVVKLTYHFKKHGKDYSSQRGLWKILGKRKRLLAYLFKTNFVSYENLIIQLGIRGLK 86          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_SOLLC (Putative membrane protein ycf1 OS=Solanum lycopersicum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.319e-17
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKI 149
            KN+LI+ KFF W N RLEDL CMNRYWF+TNNGSRFS++R+HMYPRLKI
Sbjct: 1842 KNELIKFKFFFWPNYRLEDLACMNRYWFDTNNGSRFSILRIHMYPRLKI 1890          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_BUXMI (Putative membrane protein ycf1 OS=Buxus microphylla GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 2.249e-17
Identity = 39/50 (78.00%), Postives = 44/50 (88.00%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152
            K +LI+LK F+W N +LEDL CMNRYWFNTNNGSRFSM R+HMYPRLKIR
Sbjct: 1810 KKKLIKLKCFLWPNYQLEDLACMNRYWFNTNNGSRFSMSRIHMYPRLKIR 1859          
BLAST of CX078268 vs. ExPASy Swiss-Prot
Match: YCF1_JASNU (Putative membrane protein ycf1 OS=Jasminum nudiflorum GN=ycf1-A PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.938e-17
Identity = 38/50 (76.00%), Postives = 45/50 (90.00%), Query Frame = 3
Query:    3 KNQLIQLKFFIWANSRLEDLICMNRYWFNTNNGSRFSMVRVHMYPRLKIR 152
            KN L++LKFF+W N RLEDL CMNRYWF+TNNGSRFSM+R+ +YPRLKIR
Sbjct: 1884 KNLLMKLKFFLWPNYRLEDLACMNRYWFDTNNGSRFSMLRIRLYPRLKIR 1933          
The following BLAST results are available for this feature:
BLAST of CX078268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 220
Match NameE-valueIdentityDescription
RR15_PINTH4.559e-1854.4430S ribosomal protein S15, chloroplastic OS=Pinus ... [more]
RR15_PINKO4.559e-1854.4430S ribosomal protein S15, chloroplastic OS=Pinus ... [more]
YCF1_TOBAC7.731e-1877.55Putative membrane protein ycf1 OS=Nicotiana tabacu... [more]
YCF1_SOLBU7.731e-1877.55Putative membrane protein ycf1 OS=Solanum bulbocas... [more]
YCF1_NICSY7.731e-1877.55Putative membrane protein ycf1 OS=Nicotiana sylves... [more]
YCF1_ATRBE1.010e-1777.55Putative membrane protein ycf1 OS=Atropa belladonn... [more]
RR15_MARPO1.016e-1757.9530S ribosomal protein S15, chloroplastic OS=Marcha... [more]
YCF1_SOLLC1.319e-1777.55Putative membrane protein ycf1 OS=Solanum lycopers... [more]
YCF1_BUXMI2.249e-1778.00Putative membrane protein ycf1 OS=Buxus microphyll... [more]
YCF1_JASNU2.938e-1776.00Putative membrane protein ycf1 OS=Jasminum nudiflo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_8B01_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-8B01-D2-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078268 ID=CX078268; Name=CX078268; organism=Citrus sinensis; type=EST; length=868bp
AGAAAAATCAACTAATTCAATTAAAGTTCTTTATTTGGGCCAATTCTCGA
TTAGAAGATTTAATTTGTATGAATCGGTATTGGTTTAATACCAATAATGG
GAGTCGTTTCAGTATGGTAAGGGTCCATATGTATCCACGATTGAAAATTC
GTTAATAGTGTGCTTTTCCTATCTATCATGTCCCATTTTGGGATATGAAA
ACAAAGAAATGTATACATGTCTTGTCTTCCATTCCAGTCTGATACAAGAT
ACCAAATTAATGGCGAACATTTTAATTAGATCCATAAATGAATCAAGAAA
CTCTTTTTTTTAGGTCCAAATTTTTCTCTTTTGCCGAAATATCCATCCTT
TTAGATGCCTAATCAAATTGAAAATTGGATTGATTATTGATATTGATTTT
CTAGCAAGTTCATAACGAACTTAAGATTATTGTGTATATCAAATTGAAGT
AACTAGTATTATTATTACTGATCAGTAAAATTCATCTTAAAAAAGGAAGG
GGGAGGGGTTTCGTTTTATGGTAAAAAATGCATTCATCTCAGTTAGGGTT
CAAGAAAAAAAAGAAAAAAACAGCGGATCGGTTGAATTTCAAGTATTTCG
TTTCACCAACACGATCCGGAGACTTACTTCACATTTAGAATTGCACAGAA
AAGACTATTCATCTCAAAGGGGTCTACGTAAAATTTTGGAAAAACGCCAA
CGTCTACTAGCTTATTTGTCAAAGAAAAATAGAGTACGTTATAAAGAATT
AATTAGTAAGTTGAATATCCGGGAGTCAAAAAATCGTTAATTTGAAATTT
GAAAAACAATTTCGAATTATTTGATTTTGACTGTTGATGAACTTCTTGTT
GTTTTCAACAATTCATGT
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