CX078137

Overview
NameCX078137
Unique NameCX078137
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length794
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_ACOCL (DNA-directed RNA polymerase subunit alpha OS=Acorus calamus GN=rpoA PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 6.895e-47
Identity = 97/126 (76.98%), Postives = 107/126 (84.92%), Query Frame = 3
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRR LLGEIEGTCITRAKSEK+PHEYSTI GI+ESVHEILMNLK+IVLRSNLYGT DA ICV+GP  VTAQDI+ PPSVE+VD TQHIASLTEPIDL IG
Sbjct:   23 DSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGTCITRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEVVDTTQHIASLTEPIDLCIG 148          
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_ARATH (DNA-directed RNA polymerase subunit alpha OS=Arabidopsis thaliana GN=rpoA PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 9.006e-47
Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 3
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSI 791
            D   L +G  +L+   K +ADTIGIAMRR LLGEIEGTCITRAKSE IPH+YS I GIQESVHEILMNL +IVLRSNLYGT +ALICV+GPGY+TA+DI+LPP+VEI+DNTQHIA+LTEPIDL I
Sbjct:   23 DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQHIATLTEPIDLCI 147          
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_CALFG (DNA-directed RNA polymerase subunit alpha OS=Calycanthus floridus var. glaucus GN=rpoA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.536e-46
Identity = 96/125 (76.80%), Postives = 108/125 (86.40%), Query Frame = 3
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSI 791
            D   L +G  +L+   K +ADTIGIAMR+ LLGEIEGTCITRAKSEK+PHEYSTIVGI+ESVHEILMNLK+IVL+SNLYGT DA ICV+GP YVTAQDI+ PPSVEIVD TQHIASLTEPI+L I
Sbjct:   23 DSNRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQDIISPPSVEIVDTTQHIASLTEPINLCI 147          
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_BUXMI (DNA-directed RNA polymerase subunit alpha OS=Buxus microphylla GN=rpoA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.536e-46
Identity = 97/126 (76.98%), Postives = 107/126 (84.92%), Query Frame = 3
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRR LLGEIEGTCIT AKSEKIPHEYS IVGI+ESVHEILMNLK+IVLRSNLYGT DA ICV+GP +VTAQDI+ PPSVEI+D TQHIASLTEPIDL IG
Sbjct:   23 DNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITCAKSEKIPHEYSNIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRHVTAQDIISPPSVEIIDTTQHIASLTEPIDLCIG 148          
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_ARAHI (DNA-directed RNA polymerase subunit alpha OS=Arabis hirsuta GN=rpoA PE=3 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.536e-46
Identity = 94/126 (74.60%), Postives = 108/126 (85.71%), Query Frame = 3
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRR LLGEIEGTCITRAKSE IPH+YS IVGIQESVHEILMNL +IVLRSNLYG  +A+ICV+GPGY+TA+DI+LPPSVEI+DNTQHIA+LTE IDL IG
Sbjct:   23 DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGARNAIICVQGPGYITARDIILPPSVEIIDNTQHIATLTESIDLCIG 148          
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_PEA (DNA-directed RNA polymerase subunit alpha OS=Pisum sativum GN=rpoA PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.006e-46
Identity = 96/125 (76.80%), Postives = 109/125 (87.20%), Query Frame = 3
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSI 791
            D   L +G  +L+   K +ADTIGI MRR+LLGEIEGTCITRAKSEKIPHEYSTIVGIQES+HEILMNLK+IVLRSNLYGT +A IC KGPGYVTAQDI+L PSVE++DNTQHIA+LTEPI+L I
Sbjct:   23 DSKRLYYGRFILSPLMKGQADTIGITMRRILLGEIEGTCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTREASICFKGPGYVTAQDIIL-PSVEVIDNTQHIANLTEPINLCI 146          
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_LOTJA (DNA-directed RNA polymerase subunit alpha OS=Lotus japonicus GN=rpoA PE=3 SV=1)

HSP 1 Score: 184.111 bits (466), Expect = 7.624e-46
Identity = 95/126 (75.40%), Postives = 107/126 (84.92%), Query Frame = 3
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAMRR+LLGE+EGTCITRAKSEKI HEYSTIVGIQE VHEILMNLK+IVL+SNLYG  DA IC KGPGYVTAQ+I+LPPSV IVDNTQHIA++TEPI L IG
Sbjct:   23 DSKRLYYGRFILSPLMKGQADTIGIAMRRILLGEMEGTCITRAKSEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIANVTEPIQLCIG 148          
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_SINAL (DNA-directed RNA polymerase subunit alpha OS=Sinapis alba GN=rpoA PE=1 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.957e-46
Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = 3
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +ADTIGIAM R LLGEIEGTCITRAKSE IPH+YS IVGIQESVHEILMNL +IVL+SNLYGT +  ICV+GPGY+TA+DI+LPPSVEIVDNTQHIA+LTEPI+L IG
Sbjct:   23 DSKRLYYGRFILSPLMKGQADTIGIAMARALLGEIEGTCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNPFICVQGPGYITARDIILPPSVEIVDNTQHIATLTEPINLCIG 148          
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_CHLSC (DNA-directed RNA polymerase subunit alpha OS=Chloranthus spicatus GN=rpoA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 9.957e-46
Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 3
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSI 791
            D   L +G  +L+   K +ADTIGIAMRR LLGEIEGTCITRAK +K+PHEYSTIVGI+ES+HEI MNLK+IVLRSNLYGT +A ICV+GP YVTAQDI+ PPSVEIVD TQHIASLTEPIDL I
Sbjct:   23 DSKRLYYGRFMLSPLMKGQADTIGIAMRRALLGEIEGTCITRAKLDKVPHEYSTIVGIEESIHEIFMNLKEIVLRSNLYGTRNASICVRGPRYVTAQDIISPPSVEIVDTTQHIASLTEPIDLCI 147          
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_DRIGR (DNA-directed RNA polymerase subunit alpha OS=Drimys granadensis GN=rpoA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.300e-45
Identity = 95/126 (75.40%), Postives = 107/126 (84.92%), Query Frame = 3
Query:  423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794
            D   L +G  +L+   K +AD IGIAMRR LLGEIEGTCITRAKS+KIPHEYSTIVGI+ESVH+ILMNLK+IVLRSNLYGTCDA I V+GP  VTAQDI+ PPSV++VD TQHIASLTEPIDL IG
Sbjct:   23 DSKRLSYGRFILSPLMKGQADMIGIAMRRALLGEIEGTCITRAKSDKIPHEYSTIVGIEESVHQILMNLKEIVLRSNLYGTCDASIFVRGPRCVTAQDIISPPSVKMVDTTQHIASLTEPIDLCIG 148          
The following BLAST results are available for this feature:
BLAST of CX078137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 443
Match NameE-valueIdentityDescription
RPOA_ACOCL6.895e-4776.98DNA-directed RNA polymerase subunit alpha OS=Acoru... [more]
RPOA_ARATH9.006e-4775.20DNA-directed RNA polymerase subunit alpha OS=Arabi... [more]
RPOA_CALFG1.536e-4676.80DNA-directed RNA polymerase subunit alpha OS=Calyc... [more]
RPOA_BUXMI1.536e-4676.98DNA-directed RNA polymerase subunit alpha OS=Buxus... [more]
RPOA_ARAHI1.536e-4674.60DNA-directed RNA polymerase subunit alpha OS=Arabi... [more]
RPOA_PEA2.006e-4676.80DNA-directed RNA polymerase subunit alpha OS=Pisum... [more]
RPOA_LOTJA7.624e-4675.40DNA-directed RNA polymerase subunit alpha OS=Lotus... [more]
RPOA_SINAL9.957e-4673.81DNA-directed RNA polymerase subunit alpha OS=Sinap... [more]
RPOA_CHLSC9.957e-4675.20DNA-directed RNA polymerase subunit alpha OS=Chlor... [more]
RPOA_DRIGR1.300e-4575.40DNA-directed RNA polymerase subunit alpha OS=Drimy... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_7B10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7B10-D19-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078137 ID=CX078137; Name=CX078137; organism=Citrus sinensis; type=EST; length=794bp
GAGAAATCAAAAGACATGGGAAAGCAGCCGGTGAGAATGAAGGCGGTGGT
GTACGCACTGTCGCCATTTCAACAAAAGATTATGCCGGGGCTTTGGAAGG
ATCTGACCGGTAAGATCCATCACAAGGTCTCCGATAATTGGATCAGCACT
ATCCTTTTGCTCGGTCCTCTCGTCGGCACCTACGCGTATGTCCAAAATTA
CCAGGAGAAGGAGAAGTTGGCACACAGGTATTGAAGCAAGCTGATGTGCC
TCTATTTTTTCAGAAGCTTAAGGTTCTTGTGAATTAGCTACAACTCTTGT
TGAAGTTGTGAAACATAATTGAAATTGCTATGTAGTTGAGACTACAGTAG
TTTGATTTGTGGGTTTTGTTGATGGATTGAGAACTATTGTCAAAATTCTG
AGCAATATTTTCTCTTTCTTTTGATGAAATAAATTTGATGCATGGATTGC
TAAATGCAAAAAAAAAAAAAAAAGCCGACACAATAGGCATTGCGATGCGA
AGAGTTTTGCTTGGAGAAATAGAAGGAACATGTATTACACGCGCAAAATC
TGAAAAAATTCCACACGAATATTCTACCATAGTGGGTATTCAAGAATCGG
TACATGAAATTTTAATGAATTTGAAAGATATTGTATTGAGAAGTAATCTT
TATGGAACTTGTGACGCGCTTATTTGTGTCAAAGGCCCGGGATATGTAAC
TGCTCAAGACATCCTCTTGCCGCCTTCTGTGGAAATCGTTGATAATACGC
AGCACATAGCTAGCCTAACAGAACCAATTGATTTGTCTATTGGA
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