CX078137
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_ACOCL (DNA-directed RNA polymerase subunit alpha OS=Acorus calamus GN=rpoA PE=3 SV=1) HSP 1 Score: 187.578 bits (475), Expect = 6.895e-47 Identity = 97/126 (76.98%), Postives = 107/126 (84.92%), Query Frame = 3 Query: 423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794 D L +G +L+ K +ADTIGIAMRR LLGEIEGTCITRAKSEK+PHEYSTI GI+ESVHEILMNLK+IVLRSNLYGT DA ICV+GP VTAQDI+ PPSVE+VD TQHIASLTEPIDL IG Sbjct: 23 DSKRLYYGRFILSPLLKGQADTIGIAMRRALLGEIEGTCITRAKSEKVPHEYSTIAGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRCVTAQDIISPPSVEVVDTTQHIASLTEPIDLCIG 148
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_ARATH (DNA-directed RNA polymerase subunit alpha OS=Arabidopsis thaliana GN=rpoA PE=3 SV=1) HSP 1 Score: 187.193 bits (474), Expect = 9.006e-47 Identity = 94/125 (75.20%), Postives = 108/125 (86.40%), Query Frame = 3 Query: 423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSI 791 D L +G +L+ K +ADTIGIAMRR LLGEIEGTCITRAKSE IPH+YS I GIQESVHEILMNL +IVLRSNLYGT +ALICV+GPGY+TA+DI+LPP+VEI+DNTQHIA+LTEPIDL I Sbjct: 23 DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIAGIQESVHEILMNLNEIVLRSNLYGTRNALICVQGPGYITARDIILPPAVEIIDNTQHIATLTEPIDLCI 147
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_CALFG (DNA-directed RNA polymerase subunit alpha OS=Calycanthus floridus var. glaucus GN=rpoA PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.536e-46 Identity = 96/125 (76.80%), Postives = 108/125 (86.40%), Query Frame = 3 Query: 423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSI 791 D L +G +L+ K +ADTIGIAMR+ LLGEIEGTCITRAKSEK+PHEYSTIVGI+ESVHEILMNLK+IVL+SNLYGT DA ICV+GP YVTAQDI+ PPSVEIVD TQHIASLTEPI+L I Sbjct: 23 DSNRLYYGRFVLSPLMKGQADTIGIAMRKALLGEIEGTCITRAKSEKVPHEYSTIVGIEESVHEILMNLKEIVLKSNLYGTRDASICVRGPKYVTAQDIISPPSVEIVDTTQHIASLTEPINLCI 147
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_BUXMI (DNA-directed RNA polymerase subunit alpha OS=Buxus microphylla GN=rpoA PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.536e-46 Identity = 97/126 (76.98%), Postives = 107/126 (84.92%), Query Frame = 3 Query: 423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794 D L +G +L+ K +ADTIGIAMRR LLGEIEGTCIT AKSEKIPHEYS IVGI+ESVHEILMNLK+IVLRSNLYGT DA ICV+GP +VTAQDI+ PPSVEI+D TQHIASLTEPIDL IG Sbjct: 23 DNKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITCAKSEKIPHEYSNIVGIEESVHEILMNLKEIVLRSNLYGTRDASICVRGPRHVTAQDIISPPSVEIIDTTQHIASLTEPIDLCIG 148
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_ARAHI (DNA-directed RNA polymerase subunit alpha OS=Arabis hirsuta GN=rpoA PE=3 SV=1) HSP 1 Score: 186.422 bits (472), Expect = 1.536e-46 Identity = 94/126 (74.60%), Postives = 108/126 (85.71%), Query Frame = 3 Query: 423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794 D L +G +L+ K +ADTIGIAMRR LLGEIEGTCITRAKSE IPH+YS IVGIQESVHEILMNL +IVLRSNLYG +A+ICV+GPGY+TA+DI+LPPSVEI+DNTQHIA+LTE IDL IG Sbjct: 23 DSKRLYYGRFILSPLMKGQADTIGIAMRRALLGEIEGTCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLRSNLYGARNAIICVQGPGYITARDIILPPSVEIIDNTQHIATLTESIDLCIG 148
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_PEA (DNA-directed RNA polymerase subunit alpha OS=Pisum sativum GN=rpoA PE=3 SV=1) HSP 1 Score: 186.037 bits (471), Expect = 2.006e-46 Identity = 96/125 (76.80%), Postives = 109/125 (87.20%), Query Frame = 3 Query: 423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSI 791 D L +G +L+ K +ADTIGI MRR+LLGEIEGTCITRAKSEKIPHEYSTIVGIQES+HEILMNLK+IVLRSNLYGT +A IC KGPGYVTAQDI+L PSVE++DNTQHIA+LTEPI+L I Sbjct: 23 DSKRLYYGRFILSPLMKGQADTIGITMRRILLGEIEGTCITRAKSEKIPHEYSTIVGIQESIHEILMNLKEIVLRSNLYGTREASICFKGPGYVTAQDIIL-PSVEVIDNTQHIANLTEPINLCI 146
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_LOTJA (DNA-directed RNA polymerase subunit alpha OS=Lotus japonicus GN=rpoA PE=3 SV=1) HSP 1 Score: 184.111 bits (466), Expect = 7.624e-46 Identity = 95/126 (75.40%), Postives = 107/126 (84.92%), Query Frame = 3 Query: 423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794 D L +G +L+ K +ADTIGIAMRR+LLGE+EGTCITRAKSEKI HEYSTIVGIQE VHEILMNLK+IVL+SNLYG DA IC KGPGYVTAQ+I+LPPSV IVDNTQHIA++TEPI L IG Sbjct: 23 DSKRLYYGRFILSPLMKGQADTIGIAMRRILLGEMEGTCITRAKSEKISHEYSTIVGIQEPVHEILMNLKEIVLKSNLYGIRDASICFKGPGYVTAQNIILPPSVVIVDNTQHIANVTEPIQLCIG 148
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_SINAL (DNA-directed RNA polymerase subunit alpha OS=Sinapis alba GN=rpoA PE=1 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 9.957e-46 Identity = 93/126 (73.81%), Postives = 107/126 (84.92%), Query Frame = 3 Query: 423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794 D L +G +L+ K +ADTIGIAM R LLGEIEGTCITRAKSE IPH+YS IVGIQESVHEILMNL +IVL+SNLYGT + ICV+GPGY+TA+DI+LPPSVEIVDNTQHIA+LTEPI+L IG Sbjct: 23 DSKRLYYGRFILSPLMKGQADTIGIAMARALLGEIEGTCITRAKSENIPHDYSNIVGIQESVHEILMNLNEIVLKSNLYGTRNPFICVQGPGYITARDIILPPSVEIVDNTQHIATLTEPINLCIG 148
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_CHLSC (DNA-directed RNA polymerase subunit alpha OS=Chloranthus spicatus GN=rpoA PE=3 SV=1) HSP 1 Score: 183.726 bits (465), Expect = 9.957e-46 Identity = 94/125 (75.20%), Postives = 106/125 (84.80%), Query Frame = 3 Query: 423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSI 791 D L +G +L+ K +ADTIGIAMRR LLGEIEGTCITRAK +K+PHEYSTIVGI+ES+HEI MNLK+IVLRSNLYGT +A ICV+GP YVTAQDI+ PPSVEIVD TQHIASLTEPIDL I Sbjct: 23 DSKRLYYGRFMLSPLMKGQADTIGIAMRRALLGEIEGTCITRAKLDKVPHEYSTIVGIEESIHEIFMNLKEIVLRSNLYGTRNASICVRGPRYVTAQDIISPPSVEIVDTTQHIASLTEPIDLCI 147
BLAST of CX078137 vs. ExPASy Swiss-Prot
Match: RPOA_DRIGR (DNA-directed RNA polymerase subunit alpha OS=Drimys granadensis GN=rpoA PE=3 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 1.300e-45 Identity = 95/126 (75.40%), Postives = 107/126 (84.92%), Query Frame = 3 Query: 423 DEINLMHG--LLNAKKKKKADTIGIAMRRVLLGEIEGTCITRAKSEKIPHEYSTIVGIQESVHEILMNLKDIVLRSNLYGTCDALICVKGPGYVTAQDILLPPSVEIVDNTQHIASLTEPIDLSIG 794 D L +G +L+ K +AD IGIAMRR LLGEIEGTCITRAKS+KIPHEYSTIVGI+ESVH+ILMNLK+IVLRSNLYGTCDA I V+GP VTAQDI+ PPSV++VD TQHIASLTEPIDL IG Sbjct: 23 DSKRLSYGRFILSPLMKGQADMIGIAMRRALLGEIEGTCITRAKSDKIPHEYSTIVGIEESVHQILMNLKEIVLRSNLYGTCDASIFVRGPRCVTAQDIISPPSVKMVDTTQHIASLTEPIDLCIG 148 The following BLAST results are available for this feature:
BLAST of CX078137 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 443
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078137 ID=CX078137; Name=CX078137; organism=Citrus sinensis; type=EST; length=794bpback to top |