CX078110

Overview
NameCX078110
Unique NameCX078110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length809
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078110 vs. ExPASy Swiss-Prot
Match: PCKA_MARAV (Phosphoenolpyruvate carboxykinase [ATP] OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=pckA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.140e-36
Identity = 84/214 (39.25%), Postives = 115/214 (53.74%), Query Frame = -1
Query:  171 AYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDGIKEPT-ATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGCGSRIKLPYTRKIIDAIHSGSLLNANYKKTDVFGVEIPTEVEGVPSEILDPENTWADKQAYKETLLKLAGLFKRNFEIFTNYKIGKDNKLTEEILAAGP 809
            AYP+E++    I      P ++I L CD  GVLPPVS L+     YHF+SGYTALV  TE G      +TFS CFGA F       YA +L +++ + G+  +LVNTGW+GG YG G R  +P TR II AI +G L +   +  D   +++P  V GV +E+L+P  TW     Y     +L   F  NF+ F          + + I+ AGP
Sbjct:  304 AYPLEHVEKRVIENRAGEPSHIIFLTCDMTGVLPPVSILSREAAAYHFLSGYTALVGSTEMGSSSKLKSTFSTCFGAPFFPRPAGVYAELLMKRIDEFGSKVFLVNTGWTGGPYGEGKRFSIPTTRAIIAAIQNGDLDDVETEHLDALNLDVPKHVPGVDTELLNPRTTWVSPDYYDGKAQELIAQFVENFKKF---------DVADAIVEAGP 508          
BLAST of CX078110 vs. ExPASy Swiss-Prot
Match: PCKA_DEIRA (Phosphoenolpyruvate carboxykinase [ATP] OS=Deinococcus radiodurans GN=pckA PE=3 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.541e-36
Identity = 72/125 (57.60%), Postives = 90/125 (72.00%), Query Frame = -1
Query:  435 AYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGCGSRIKLPYTR 809
            AYPIE I N +   VG  PKNV+ L  DAFGVLPP+S+L   Q MY FISG+TA + GTE+G+ +PT TFS CFGA F+  HP +YA +LA+K+++ GA  WLVNTGW+GG YG G R+ L  TR
Sbjct:  325 AYPIEQIANIQPGSVGGIPKNVVFLTADAFGVLPPLSRLTPEQMMYQFISGFTAKIPGTEEGVTDPTPTFSTCFGAPFMPRHPGEYARLLAQKVEESGAKVWLVNTGWTGGKYGEGHRMSLNLTR 449          
BLAST of CX078110 vs. ExPASy Swiss-Prot
Match: PCKA_TRYCR (Phosphoenolpyruvate carboxykinase [ATP], glycosomal OS=Trypanosoma cruzi GN=PEPCK PE=1 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 1.105e-31
Identity = 71/145 (48.97%), Postives = 92/145 (63.45%), Query Frame = -1
Query:  381 AYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTE-DGIKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGCGS-RIKLPYTRKIIDAIHSGSLLNANYKK 809
            AYP+ +I  A    +  HPKNVI L  DAFGV+PPV++L  AQ M+ F+ GYTA V G E  G +     FS+CFG  F++ H T Y   LAEKMQKH +  WL+NTG++GG    G+ R+ L  TR IIDAIH G+L    Y++
Sbjct:  309 AYPLSHIEGALSKAIAGHPKNVIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTANVPGVEAGGTRTARPIFSSCFGGPFLVRHATFYGEQLAEKMQKHNSRVWLLNTGYAGGRADRGAKRMPLRVTRAIIDAIHDGTLDRTEYEE 453          
BLAST of CX078110 vs. ExPASy Swiss-Prot
Match: PCKA_TRYBB (Phosphoenolpyruvate carboxykinase [ATP], glycosomal OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 1.443e-31
Identity = 71/144 (49.31%), Postives = 93/144 (64.58%), Query Frame = -1
Query:  384 AYPIEYIPNAKIPCVGPHPKNVILLACDAFGVLPPVSKLNLAQTMYHFISGYTALVAGTEDG-IKEPTATFSACFGAAFIMLHPTKYAAMLAEKMQKHGATGWLVNTGWSGGSYGCGS-RIKLPYTRKIIDAIHSGSLLNANYK 809
            AYP+ +I  A    V  HPKN+I L  DAFGV+PPV++L  AQ M+ F+ GYTA V G E G  +     FS+CFG  F++ H T Y   LAEKM+KH +  WL+NTG++GG    G+ R+ L  TR IIDAIH G+L  A+Y+
Sbjct:  309 AYPLMHIDGALSKAVAGHPKNIIFLTNDAFGVMPPVARLTSAQAMFWFVMGYTANVPGVEAGSARVARPIFSSCFGGPFLVRHATHYGQQLAEKMEKHNSRVWLLNTGYAGGRADRGAKRMPLRVTRAIIDAIHDGTLDQADYE 452          
The following BLAST results are available for this feature:
BLAST of CX078110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 284
Match NameE-valueIdentityDescription
PCKA_MARAV1.140e-3639.25Phosphoenolpyruvate carboxykinase [ATP] OS=Marinob... [more]
PCKA_DEIRA2.541e-3657.60Phosphoenolpyruvate carboxykinase [ATP] OS=Deinoco... [more]
PCKA_TRYCR1.105e-3148.97Phosphoenolpyruvate carboxykinase [ATP], glycosoma... [more]
PCKA_TRYBB1.443e-3149.31Phosphoenolpyruvate carboxykinase [ATP], glycosoma... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_7A07_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7A07-B13-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078110 ID=CX078110; Name=CX078110; organism=Citrus sinensis; type=EST; length=809bp
TTTTTTTTTTGACTCAAATATCGGATTACTTAATTAATTCAGAGAACAAG
TTTACATATGAATCGAACCACACATGTCGAATATGACTATATTACGCTTT
ATTTCCATCATATTTCCCAAACCACACTCACGTTCTTTGCTTGTTCTTCA
CTCGGTCTAAATTAGAAATTTGGACCAGCTGCAAGGATCTCTTCAGTGAG
CTTGTTGTCCTTGCCAATCTTGTAGTTTGTGAATATTTCAAAGTTCCTCT
TGAAAAGACCAGCCAGCTTCAGCAGTGTCTCCTTGTAAGCCTGCTTGTCT
GCCCAAGTGTTCTCTGGATCCAGGATTTCTGAAGGCACTCCCTCGACTTC
AGTGGGGATTTCCACCCCAAATACATCAGTTTTCTTGTAATTTGCATTCA
ACAGGCTGCCAGAGTGTATCGCATCAATGATTTTTCGAGTGTACGGTAAC
TTGATGCGGCTGCCACAACCATAGCTTCCACCTGACCATCCAGTGTTGAC
GAGCCATCCTGTAGCACCATGCTTCTGCATCTTCTCAGCCAGCATTGCTG
CATACTTGGTAGGATGCAGCATGATAAATGCTGCACCAAAGCAAGCTGAA
AATGTTGCCGTTGGCTCCTTAATACCATCCTCTGTTCCAGCTACCAAAGC
AGTGTAGCCACTGATGAAATGGTACATTGTTTGTGCCAGGTTCAGCTTGC
TCACTGGTGGGAGTACACCAAAAGCATCACATGCCAAAAGGATGACATTC
TTGGGATGAGGACCAACGCATGGTATCTTTGCATTGGGGATATACTCAAT
GGGGTAGGC
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