CX078104

Overview
NameCX078104
Unique NameCX078104
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP_ASPTN (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=pab1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.209e-16
Identity = 67/256 (26.17%), Postives = 109/256 (42.58%), Query Frame = 3
Query:   18 AAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764
            AAP  E   +    P        S+YVG + P VT A+L E+FSS G +   ++    + +    Y +V+Y +      A+  LN   I G+P ++ W    SQR+     +G  NVF+ +L   + +  L   F+ F      +V  D+  G S+G+GFV +   E A +AI  +NG  L ++++           G      D +S  E                  E    +T VY+ NL  E++  +  + F
Sbjct:   26 AAPAAEATAAETAAPSTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV---------FVGHHISKKDRQSKFE------------------EMKANFTNVYIKNLDQEISEEEFRQMF 249          

HSP 2 Score: 72.4034 bits (176), Expect = 3.081e-12
Identity = 46/171 (26.90%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575
            +V++ N+   + N  L + F++ G +  CK+ + +      YGFV Y    +A  AI  +NG  +  + + V    +   R    E+   +F NV++ +L  E+++      F  F   + A +  DQ+ G+SRGFGFV++   + AQ+A++++N K +  +++    A K
Sbjct:  137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQE-GKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQK 306          
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP_PICST (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Pichia stipitis GN=PAB1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 67/238 (28.15%), Postives = 110/238 (46.22%), Query Frame = 3
Query:   72 ASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764
            A +  S+YVG ++  V  A L E+FS  G +   ++    + K    Y +V+Y        AI  LN   I G+P ++ W    SQR+ +   SG  N+F+ +L P + +  L   FS F      +V  D   G+S+ FGFV +   E A++AI ++NG  L +R++   +  K  +  D  + S F+ +             K+N         +T +YV N+  E +  DL + F
Sbjct:   48 AESTASLYVGELNTSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKMEDGEKAIEELNYSPIEGRPCRIMW----SQRDPSARRSGDGNIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDD-MGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREV---FVGKHISKKD--RESKFEEI-------------KAN---------FTNIYVKNIDLEYSEEDLKKLF 253          

HSP 2 Score: 72.4034 bits (176), Expect = 3.081e-12
Identity = 45/171 (26.32%), Postives = 83/171 (48.54%), Query Frame = 3
Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575
            ++++ N+HP + N  L + FS+ G +  CK+   D      +GFV Y    +A  AI  +NG  +  + + V    +   RE       +   N++V ++  E ++  L   F+ +   +   +  D + G+S+GFGFV++   E A  A+ +LN K +  ++I    A K
Sbjct:  141 NIFIKNLHPAIDNKALHDTFSTFGKILSCKVATDDMGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAE-GKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQK 310          

HSP 3 Score: 70.4774 bits (171), Expect = 1.171e-11
Identity = 52/165 (31.52%), Postives = 83/165 (50.30%), Query Frame = 3
Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA-------------YASSQREDTSGH--FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 527
            ++YV NI  + +   L+++F+  G +    L K  +     +GFV+Y    +A  A+  LN + I GQ I V  A             Y +++ E  S +   N+F+ +L   +    L   F  F T + ARVM D+ TG+S+GFGFV F + E+A  AI ++N
Sbjct:  234 NIYVKNIDLEYSEEDLKKLFTPYGAITSIYLEKDAEGKSKGFGFVNYEGHEAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQYENTRLEKLSKYQGVNLFIKNLDDTIDSEKLEEEFKPFGTITSARVMVDE-TGKSKGFGFVCFSSPEEATKAITEMN 397          
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP_MAGGR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Magnaporthe grisea GN=PAB1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 63/234 (26.92%), Postives = 109/234 (46.58%), Query Frame = 3
Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-----SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764
            +V++ N+   + N  L + F++ G +  CK+ + +  +   YGFV Y    +A+ AI  +NG  +  + + V        R+       +   N++V +++PEVTD      F  +   + + +  DQ+TG+SRGFGFV+F + EDA  A+ +LN K    + +    A K      E++        EL        QEK+++       Q   +Y+ NL  EV    L + F
Sbjct:  150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQK----KHEREE-------ELRKSYEAARQEKASK------YQGVNLYIKNLDDEVDDEKLRQLF 366          

HSP 2 Score: 78.9518 bits (193), Expect = 3.292e-14
Identity = 60/233 (25.75%), Postives = 98/233 (42.06%), Query Frame = 3
Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764
            S+YVG + P VT A+L E+FS  G +   ++    + +    Y +V+Y        A+  LN   I G+P ++ W    SQR+     +G  NVF+ +L   + +  L   F+ F      +V  D+  G S+G+GFV +   E A  AI  +NG  L  +++   +        D +   D                        E    +T +YV N++ EVT  +    F
Sbjct:   62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMW----SQRDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDE-NGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKV---YVGHHIPKKDRQSKFD------------------------EMKANFTNIYVKNINPEVTDDEFRTLF 262          
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP_ASPNC (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=pab1 PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 63/251 (25.10%), Postives = 107/251 (42.63%), Query Frame = 3
Query:   24 PQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764
            P++  + +    P  +     S+YVG + P VT A+L E+FSS G +   ++    + +    Y +V+Y +      A+  LN   I G+P ++ W+        T G  NVF+ +L   + +  L   F+ F      +V  D+  G S+G+GFV +   E A +AI  +NG  L ++++           G      D +S  E                  E    +T VY+ NL SE+   +  + F
Sbjct:   34 PEVTAVENSTPAPAANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISKKDRQSKFE------------------EMKANFTNVYIKNLDSEIDDDEFRKMF 255          

HSP 2 Score: 75.485 bits (184), Expect = 3.639e-13
Identity = 49/171 (28.65%), Postives = 87/171 (50.88%), Query Frame = 3
Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575
            +V++ N+   + N  L + F++ G +  CK+ + +      YGFV Y    +A  AI  +NG  +  + + V    +   R    E+   +F NV++ +L  E+ D      F  F   + A +  DQ+ G+SRGFGFV+F   E AQ+A+ ++N K + ++++    A K
Sbjct:  143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQK 312          
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ELAV2_PONAB (ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 3
Query:   36 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 533
            P+ SGN     D+ T  ++ V  +   +T   L+ +F S G +E CKL++         YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ELAV2_MOUSE (ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 3
Query:   36 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 533
            P+ SGN     D+ T  ++ V  +   +T   L+ +F S G +E CKL++         YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ELAV2_HUMAN (ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 2.062e-16
Identity = 59/170 (34.71%), Postives = 89/170 (52.35%), Query Frame = 3
Query:   36 PILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 533
            P+ SGN     D+ T  ++ V  +   +T   L+ +F S G +E CKL++         YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   28 PVDSGNTE---DSKT--NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP_ASPFU (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Aspergillus fumigatus GN=pab1 PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.693e-16
Identity = 65/255 (25.49%), Postives = 109/255 (42.75%), Query Frame = 3
Query:   18 AAPQIEPILSGN--LPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764
            +AP++  + S +    P        S+YVG + P VT A+L E+FSS G +   ++    + +    Y +V+Y +      A+  LN   I G+P ++ W+        T G  NVF+ +L   + +  L   F+ F      +V  D+  G S+G+GFV +   E A +AI  +NG  L ++++           G      D +S  E                  E    +T VY+ N+  EVT  +  + F
Sbjct:   28 SAPEVTAVESASPSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDPALRKT-GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDE-FGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFV---------GHHISKKDRQSKFE------------------EMKANFTNVYIKNIDQEVTDEEFRKMF 253          

HSP 2 Score: 76.6406 bits (187), Expect = 1.634e-13
Identity = 49/171 (28.65%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575
            +V++ N+   + N  L + F++ G +  CK+ + +      YGFV Y    +A  AI  +NG  +  + + V    +   R    E+   +F NV++ ++  EVTD      F  F   + A +  DQ+ G+SRGFGFV+F   + AQ+A++++N K +  +++    A K
Sbjct:  141 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQE-GKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQK 310          
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ELAV2_RAT (ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2 PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 2.693e-16
Identity = 59/171 (34.50%), Postives = 88/171 (51.46%), Query Frame = 3
Query:   36 PILSGNLPPRFDASTCRSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 533
            P+ SGN          ++  + N  PQ +T   L+ +F S G +E CKL++         YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   28 PVDSGN------TEDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189          
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABPX_ARATH (Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis thaliana GN=At2g36660 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.999e-16
Identity = 53/160 (33.12%), Postives = 83/160 (51.88%), Query Frame = 3
Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            S+YVG++HP VT  +L + F+    L   +L K   S     YG+ ++  R+ A LAI   N   + G+ I+V W+  +      +G  NVFV +L   VT+A L   F  F      +V    + G+SRG+GFV F  ++ A +AI  LN   + +++I
Sbjct:   25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDAR-RNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVA-TLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEI 182          

HSP 2 Score: 75.8702 bits (185), Expect = 2.787e-13
Identity = 62/230 (26.96%), Postives = 108/230 (46.96%), Query Frame = 3
Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL--IKKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764
            +V+V N+   VTNA+LQ++F   G +  CK+  ++  KS  YGFV +    +A  AI TLN   +  + I V      + R +    + N+++ +L  +V++  L   F+ F       +  D+     RG+ FV+F N EDA+ A   +NG   G+   +C +  +     + +Q               E  +EK  E   +   + + +YV N++  VT  +L +HF
Sbjct:  113 NVFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRVKPEEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTKFGS---KCLYVGRAQKKAEREQL------------LREQFKEKHEEQ--KMIAKVSNIYVKNVNVAVTEEELRKHF 324          
The following BLAST results are available for this feature:
BLAST of CX078104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
PABP_ASPTN1.209e-1626.17Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_PICST2.062e-1628.15Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_MAGGR2.062e-1626.92Polyadenylate-binding protein, cytoplasmic and nuc... [more]
PABP_ASPNC2.062e-1625.10Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_PONAB2.062e-1634.71ELAV-like protein 2 OS=Pongo abelii GN=ELAVL2 PE=2... [more]
ELAV2_MOUSE2.062e-1634.71ELAV-like protein 2 OS=Mus musculus GN=Elavl2 PE=2... [more]
ELAV2_HUMAN2.062e-1634.71ELAV-like protein 2 OS=Homo sapiens GN=ELAVL2 PE=1... [more]
PABP_ASPFU2.693e-1625.49Polyadenylate-binding protein, cytoplasmic and nuc... [more]
ELAV2_RAT2.693e-1634.50ELAV-like protein 2 OS=Rattus norvegicus GN=Elavl2... [more]
PABPX_ARATH5.999e-1633.13Probable polyadenylate-binding protein At2g36660 O... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_7A04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7A04-B7-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078104 ID=CX078104; Name=CX078104; organism=Citrus sinensis; type=EST; length=773bp
ACCATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGA
AATCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGG
AAACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAA
GTACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCC
TATGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGT
GACTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGG
CTTATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTT
GTTGGTGATCTTAGCCCTGAAGTAACAGATGCTACTTTGTTTGCGTGCTT
CTCTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGA
CTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGAT
GCCCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACA
GATTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGC
AAAGTTCAGATTTCAAAAGTGTTGTAGAGCTTACAAATGGAACATCTGAA
GATGGTCAAGAGAAGAGCAATGAGGACGCTCCGGAGAACAATCCTCAGTA
TACAACTGTTTATGTTGGCAATCTTTCTTCAGAGGTTACCTCAGTTGATC
TCCACCGACATTTTCATGCTCTT
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