CX078104
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3) HSP 1 Score: 82.0333 bits (201), Expect = 3.888e-15 Identity = 67/255 (26.27%), Postives = 109/255 (42.75%), Query Frame = 3 Query: 36 PILSGNLPPRFDAS-----TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764 P SG+ P A+ S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y A+ LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F +V D+ G S+G+GFV + E A +AI +NG L +++ G +++ S F+ E +T +YV N+ +VT D F Sbjct: 27 PAASGDAPTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDE-LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKV-----FVGHHIPKKERMSKFE----------------------EMKANFTNIYVKNIDLDVTDEDFRELF 249
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP_EMENI (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Emericella nidulans GN=pab1 PE=2 SV=2) HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15 Identity = 55/190 (28.95%), Postives = 91/190 (47.89%), Query Frame = 3 Query: 6 PSLLAAPQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554 P AP++ + P S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y D A+ LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F +V D+ G S+G+GFV + E A +AI +NG L ++++ Sbjct: 19 PDNAPAPEVTAV---EAPATTSQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHGERALDELNYTLIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDE-FGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKV 200 HSP 2 Score: 75.8702 bits (185), Expect = 2.787e-13 Identity = 48/171 (28.07%), Postives = 87/171 (50.88%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD---KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575 +V++ N+ + N L + F++ G + CK+ + + YGFV Y +A AI +NG + + + V + R E+ +F N+++ ++ PEV D F F + A + D + G+SRGFGFV+F E AQ+A+ ++N K + ++++ A K Sbjct: 131 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSE-GKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQK 300
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 5.078e-15 Identity = 59/228 (25.88%), Postives = 100/228 (43.86%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVD 749 S+YVG + P VT A+L E+F+ GP+ ++ + + Y +V+Y + A+ LN I GQ ++ W SQR+ +G N+F+ +L + + L F+ F +V D+ G+SRGF FV + E A +AI +NG L ++++ G+++ E Q+T VY+ N+ EVT + Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMW----SQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVG---------------------------HHVGKKERLSKVEELRAQFTNVYIKNVDLEVTDAE 242 HSP 2 Score: 81.2629 bits (199), Expect = 6.633e-15 Identity = 52/174 (29.89%), Postives = 89/174 (51.15%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554 +VY+ N+ +VT+A +++ GP L + +K +GFV+Y + SA A+ LN + + G+ + A S+RE S N++V +L E D L A F F T + ++VM D +G SRGFGFV + + ++A A++++NGK +G + + Sbjct: 228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDD-SGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPL 400
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 80.8777 bits (198), Expect = 8.663e-15 Identity = 56/196 (28.57%), Postives = 96/196 (48.98%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSED 653 S+YVG++ P+V+ L E+F+ G + ++ + + SY +V+Y++ A A+ TLN I G+ ++ W SQR+ + SG NVF+ +L + L+ FS F +V+ D S+GFGFV + QE A AI +NG + +++ + +S + Q ++ K SED Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMW----SQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKV---FVGPFKSSKERGQPTEVKFTNVFFKNLSED 198 HSP 2 Score: 76.2554 bits (186), Expect = 2.134e-13 Identity = 55/177 (31.07%), Postives = 89/177 (50.28%), Query Frame = 3 Query: 60 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575 P S +V++ N+ + + L + FS+ G + CK++ D +S +GFV Y + SA AI +NG I GQ + V +S +R + T F NVF +LS +V L + ++ +M D K G+S+GFGF +F + E A++ + + NGK + I A K Sbjct: 90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQK 265 HSP 3 Score: 68.1662 bits (165), Expect = 5.811e-11 Identity = 42/167 (25.15%), Postives = 77/167 (46.11%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH--------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554 +V+ N+ V L+E+ G + ++ DK +GF ++ +A + NG+ G+PI A +RE H N+++ ++ + + L FS F T + A VM D K S+GFGFV + ++A A+ ++NG+ +G + + Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPL 355
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP_NEUCR (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Neurospora crassa GN=pab-1 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 1.131e-14 Identity = 62/233 (26.61%), Postives = 100/233 (42.92%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTNGTSEDGQEKSNEDAPENNPQYTTVYVGNLSSEVTSVDLHRHF 764 S+YVG + P VT A+L E+FS G + ++ + + Y +V+Y A+ LN I G+P ++ W SQR+ +G N+F+ +L + + L F+ F +V D+ G S+G+GFV + E A AI +NG L +++ G D +S E E +T VYV N+++EVT + F Sbjct: 61 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMW----SQRDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEH-GNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYV---------GHHIPKKDRQSKFE------------------EMKANFTNVYVKNINNEVTDEEFRELF 261 HSP 2 Score: 77.0258 bits (188), Expect = 1.251e-13 Identity = 54/192 (28.12%), Postives = 96/192 (50.00%), Query Frame = 3 Query: 87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR----EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDEKQSSDFKSVVELTN 638 ++++ N+ + N L + F++ G + CK+ + + + YGFV Y +A+ AI +NG + + + V R E+ +F NV+V +++ EVTD F+ F + + + DQ+ G+SRGFGFV+F E A A+++LNGK + + A K +E + S + +E N Sbjct: 149 NIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQE-GKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKAN 339
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.478e-14 Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 3 Query: 39 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 533 IL+G D+ T ++ V + +T + +F S G +E CKL++ YGFV+Y D A AI TLNG + + IKV++A SS + N++V L + + FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+ Sbjct: 21 ILNGTNGEADDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 184
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14 Identity = 62/201 (30.85%), Postives = 97/201 (48.26%), Query Frame = 3 Query: 57 PPRFDA-STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-------------------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 569 PP+ + S ++VGN+ V +A L ++F S G +E ++I +GFV A NG + G+P++VN +RED SG+ V+VG+LS V D L + FS +ARV++D+ +GRS+GFGFV++ + ++ Q+AI L+G L RQIR + A Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.520e-14 Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 3 Query: 84 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 530 R+ + N PQ +T L+ +FSS G +E KLI+ + YGFV+Y + A AI TLNG + + IKV++A SS+ + N+++ L +T + FS F ++RV+ DQ TG SRG F+ F + +A+ AI NG Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 3.292e-14 Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 3 Query: 84 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 530 R+ + N PQ +T L+ +FSS G +E KLI+ + YGFV+Y + + A AI TLNG + + IKV++A SS+ T N+++ L +T + F F ++RV+ DQ TG SRG F+ F + +A+ AI NG Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE---TIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 4.299e-14 Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 3 Query: 102 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 533 N PQ +T + +F S G +E CKL++ YGFV+Y D A AI TLNG + + IKV++A SS + N++V L ++ + FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+ Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189 The following BLAST results are available for this feature:
BLAST of CX078104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CX078104 ID=CX078104; Name=CX078104; organism=Citrus sinensis; type=EST; length=773bpback to top |