CX078104 | Citrus Genome Database

Overview


Name	CX078104
Unique Name	CX078104
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	773

Libraries


Library Name	Type
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig5276	contig	Csv1_Contig5276:215..987.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

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BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ROC2_NICPL (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.639e-13
Identity = 62/205 (30.24%), Postives = 92/205 (44.88%), Query Frame = 3

Query:   60 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS-------------------------------GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 569
            PRF       ++VGN+   V +A L  +F   G +E  ++I    S     +GFV    +     A    NG  I G+ I+VN   A ++RE++S                                   V+VG+LS  V D  L   FS      DA+V++D+ +GRSRGFGFV++ + ++   AI+ LNG  L  R IR + A
Sbjct:   82 PRFSEDL--KLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEVEAAEQQFNGYEIDGRAIRVNAGPAPAKRENSSFGGGRGGNSSYGGGRDGNSSFGGARGGRSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKEVNDAIDSLNGIDLDGRSIRVSAA 284

[Close]

BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: RRP2_SPIOL (30S ribosomal protein 2, chloroplastic OS=Spinacia oleracea GN=PSRP2 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13
Identity = 58/182 (31.87%), Postives = 86/182 (47.25%), Query Frame = 3

Query:   69 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWA--------YASSQREDTS---GHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 569
            D    R +YVGNI   + N  L+ +    G +E  +++    S     +GFV       A   I  LN   I G+ IKVN           A++Q ED+      + V++G+L+  VT+  L   FS       A+V     T +S GFGFVSF ++E+ ++AI  LN   L  ++IR N A
Sbjct:   79 DGEGARRLYVGNIPRNLNNDELRTIVEEHGAIEIAEVMYDKYSGRSRRFGFVTMKTVEDANAVIEKLNDTEIGGRKIKVNITEKPLEGMDIATTQAEDSQFVESPYKVYIGNLAKTVTNELLKDFFSEKGKVLGAKVQRTPGTSKSNGFGFVSFSSEEEVEAAIQALNNSVLEGQKIRVNKA 260

[Close]

BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: ROC1_NICPL (30 kDa ribonucleoprotein, chloroplastic OS=Nicotiana plumbaginifolia PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.753e-13
Identity = 54/178 (30.34%), Postives = 87/178 (48.88%), Query Frame = 3

Query:   90 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTS--------------GHFN----VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 557
            ++VGN+     +A L E+F   G +E  ++I    +     +GFV    +     A    NG  + G+ ++VN      +RE++S              G F+    V+VG+L+  V    L   FS      DA+V++D+ +GRSRGFGFV++ + E+  +AI  L+G  L  R IR
Sbjct:   89 IFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEEVEAACQQFNGYELDGRALRVNSGPPPEKRENSSFRENSSFRGGSRGGGSFDSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNNAIESLDGVDLNGRAIR 266

[Close]

BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP5_PONPY (Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:   69 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:   63 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP5_PANTR (Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:   69 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:   63 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP5_MACMU (Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:   69 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:   63 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP5_HYLLA (Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:   69 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:   63 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP5_HUMAN (Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:   69 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:   63 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: PABP5_GORGO (Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla GN=PABPC5 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 6.208e-13
Identity = 48/160 (30.00%), Postives = 80/160 (50.00%), Query Frame = 3

Query:   87 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            ++YVG++ P VT  +L + F   GPL   ++    + +    YG+V++     A  A+ T+N   I G+P ++ W+     R   SG  N+F+ +L   + +  LF  FS F      +V+ D     S+G+ +V F +   A  AI  +NG  L NRQ+
Sbjct:   19 ALYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMNFDLINGKPFRLMWS-QPDDRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDD--NGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQV 175

HSP 2 Score: 73.1738 bits (178), Expect = 1.806e-12
Identity = 49/180 (27.22%), Postives = 89/180 (49.44%), Query Frame = 3

Query:   69 DASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 554
            D +T  +V+V NI   + +  L+E+F   GP E  K+I+        +GFV Y    +A  A++ L+G+ I G+ + V  A    +R               +       +++ +L   + D  L   FS F + S A+VM +   G+ +GFG V F + E+A  A++++NG+ +G++ +
Sbjct:  194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371

HSP 3 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 51/179 (28.49%), Postives = 86/179 (48.04%), Query Frame = 3

Query:   63 RFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGFVD-YFDRRSAA------LAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 575
            R   S   ++++ N+   + N  L  +FS+ G +  CK++  D  S G+   +FD  +AA      +  V LN R ++    K     A+  R  D +   NVFV ++  ++ D  L   F  +      +V+ D  +G+S+GFGFV +   E AQ A+ DL+GK +  + +    A K
Sbjct:   99 RLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQK 276

[Close]

BLAST of CX078104 vs. ExPASy Swiss-Prot
Match: TSAP1_MOUSE (tRNA selenocysteine 1-associated protein 1 OS=Mus musculus GN=Trnau1ap PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 8.108e-13
Identity = 51/177 (28.81%), Postives = 96/177 (54.24%), Query Frame = 3

Query:   87 SVYVGNIHPQVTNALLQEVFSSTGP-LEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFG----QPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK-WLGNRQIRCNWAAKGAT 584
            S+++G++ P +    +   F++ G  +   K+I+       + Y FV++ D  +A   +  +NG+ + G    +  K+N+A    Q  D S  +++FVGDL+P+V D  L+  F  V+P+C   +V+ D  TG S+G+GFV F ++ + + A+ +  G   LG + +R + A   A+
Sbjct:    4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYGKQ-PDNSPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLD-PTGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAIPKAS 178

The following BLAST results are available for this feature:

BLAST of CX078104 vs. ExPASy Swiss-Prot

BLAST of CX078104 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123


Match Name	E-value	Identity	Description
ROC2_NICPL	3.639e-13	30.24	31 kDa ribonucleoprotein, chloroplastic OS=Nicotia...	[more]
RRP2_SPIOL	4.753e-13	31.87	30S ribosomal protein 2, chloroplastic OS=Spinacia...	[more]
ROC1_NICPL	4.753e-13	30.34	30 kDa ribonucleoprotein, chloroplastic OS=Nicotia...	[more]
PABP5_PONPY	6.208e-13	30.00	Polyadenylate-binding protein 5 OS=Pongo pygmaeus ...	[more]
PABP5_PANTR	6.208e-13	30.00	Polyadenylate-binding protein 5 OS=Pan troglodytes...	[more]
PABP5_MACMU	6.208e-13	30.00	Polyadenylate-binding protein 5 OS=Macaca mulatta ...	[more]
PABP5_HYLLA	6.208e-13	30.00	Polyadenylate-binding protein 5 OS=Hylobates lar G...	[more]
PABP5_HUMAN	6.208e-13	30.00	Polyadenylate-binding protein 5 OS=Homo sapiens GN...	[more]
PABP5_GORGO	6.208e-13	30.00	Polyadenylate-binding protein 5 OS=Gorilla gorilla...	[more]
TSAP1_MOUSE	8.108e-13	28.81	tRNA selenocysteine 1-associated protein 1 OS=Mus ...	[more]

Pages

Properties


Property Name	Value
Genbank description	UCRCS08_7A04_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-7A04-B7-1-6.g, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX078104 ID=CX078104; Name=CX078104; organism=Citrus sinensis; type=EST; length=773bp
ACCATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGA
AATCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGG
AAACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAA
GTACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCC
TATGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGT
GACTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGG
CTTATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTT
GTTGGTGATCTTAGCCCTGAAGTAACAGATGCTACTTTGTTTGCGTGCTT
CTCTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGA
CTGGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGAT
GCCCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACA
GATTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGC
AAAGTTCAGATTTCAAAAGTGTTGTAGAGCTTACAAATGGAACATCTGAA
GATGGTCAAGAGAAGAGCAATGAGGACGCTCCGGAGAACAATCCTCAGTA
TACAACTGTTTATGTTGGCAATCTTTCTTCAGAGGTTACCTCAGTTGATC
TCCACCGACATTTTCATGCTCTT