CX078096

Overview
NameCX078096
Unique NameCX078096
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX078096_ssr376 microsatellite CX078096_ssr376:376..387. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
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BLAST of CX078096 vs. ExPASy Swiss-Prot
Match: MPCP_YEAST (Mitochondrial phosphate carrier protein OS=Saccharomyces cerevisiae GN=MIR1 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.024e-12
Identity = 49/116 (42.24%), Postives = 63/116 (54.31%), Query Frame = 3 
Query:    9 KFASFETIVEMIYKHAVPTPKDQCSKPLQLGISFAGGYVAGVFCAIVSHPADNLVSFLNNAKGA----TVG---DAVKKLGLWGLFTRGLPLRIVMIGTLTGAQWGIYDAFKVFVG 335
            KF  FE   E  Y  A   PK++ S      ++   G  AG+  AIVS PAD L+S +N  K A    TVG      K+LG +G F  GLP R+VM+GTLT  Q+GIY + K  +G
Sbjct:  187 KFLVFERASEFYYGFA--GPKEKLSSTSTTLLNLLSGLTAGLAAAIVSQPADTLLSKVNKTKKAPGQSTVGLLAQLAKQLGFFGSFA-GLPTRLVMVGTLTSLQFGIYGSLKSTLG 299
The following BLAST results are available for this feature:
BLAST of CX078096 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
MPCP_YEAST4.024e-1242.24Mitochondrial phosphate carrier protein OS=Sacchar... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6H10_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6H10-O20-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078096 ID=CX078096; Name=CX078096; organism=Citrus sinensis; type=EST; length=773bp
CTATGATGAAGTTTGCTTCTTTTGAAACCATTGTTGAGATGATCTACAAG
CATGCAGTTCCCACACCAAAGGACCAGTGCAGCAAACCTCTGCAGCTTGG
AATTAGTTTTGCTGGTGGTTATGTGGCTGGTGTTTTCTGTGCTATTGTGT
CGCATCCTGCTGACAATCTTGTCTCTTTCCTTAACAATGCCAAAGGAGCA
ACTGTTGGTGATGCTGTGAAGAAGCTAGGTTTGTGGGGTCTGTTTACCCG
TGGGCTTCCTCTCCGTATTGTCATGATTGGAACACTCACTGGAGCTCAAT
GGGGAATCTATGATGCATTCAAAGTTTTTGTGGGACTGCCAACCACTGGT
GGTGTTGCTCCTGTTGCTCCTGCCCCTGCTGCTGCTGAGCTTGCAAAGGT
GTAGGTCAACCAAATAGAATTGTTTTATTTTGGGTTTTGTGGATTCCAGG
AGAACTTCTTGATAGGGATTAATAAACATAGGTGACAAAATTGAAGGCGC
TTGAGTGTCTCAAGTCAGAGTATTCTTTATAATTGAGAACTATTTGTTCG
AGCTTAAGATTTGCTTTTGCTGAGGATGGTTTTGTTTTCATCCAAATATC
AGAAAACTTTTGTAGTTAGATTATACATGAAATTTCACTCTGATATCCAG
CTCGCAATCCTCCCCATGAATAGGTGACAAAATAATGTGCAAGGGGAGAG
TACCTAATTTCTCTTCGCAAATGCGTGGAGTGTACGATTATTAGATCATC
ATTACTGCAAAAAAAAAGGGGGG
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