CX078076

Overview
NameCX078076
Unique NameCX078076
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX078076 vs. ExPASy Swiss-Prot
Match: EF1G2_ARATH (Probable elongation factor 1-gamma 2 OS=Arabidopsis thaliana GN=At1g57720 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.966e-12
Identity = 57/189 (30.16%), Postives = 94/189 (49.74%), Query Frame = -3 
Query:  245 HKKEAFLSLNPFGQVPVLEHGDQKLFESRAITQYIAQEFPD---KGTQLTCPGKPIAPLLVWKEVEALQFDPPSSKLNWELVYKPMFGMTTDPAAVEENE-AKLAKILDVYEARLSQSKYLACDSFTLVDLHHLPNINLLLGTPV-KKLFDARPHVSAWAADITSRPAWAKVLALLKH-*TLCPLPTRR 793
            +K   FL +NP G+VPVLE  +  +FES AI +Y++++  D    G+ L       A +  W +  +L+ D  ++ L W   + P  G     A  EE   + L + L+     L+ + +L   S TL D+  + N+NL   T + KK   A PHV  +   + ++P + KVL   K    + P+PT++
Sbjct:   40 NKSPEFLKMNPIGKVPVLETPEGPIFESNAIARYVSRKNGDNSLNGSSLI----EYAHIEQWIDFSSLEID--ANMLKW---FAPRMGYAPFSAPAEEAAISALKRGLEALNTHLASNTFLVGHSVTLADIVTICNLNLGFATVMTKKFTSAFPHVERYFWTMVNQPEFKKVLGDAKQTEAVPPVPTKK 219
The following BLAST results are available for this feature:
BLAST of CX078076 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 21
Match NameE-valueIdentityDescription
EF1G2_ARATH4.966e-1230.16Probable elongation factor 1-gamma 2 OS=Arabidopsi... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_6G10_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-6G10-M20-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX078076 ID=CX078076; Name=CX078076; organism=Citrus sinensis; type=EST; length=879bp
CTTTTTTACGCAGAATATCTCCAGCTTCGTTTTATTAGGGTACATAGATA
AAATAAAAACCTCAAGCCATCAACATCAAAGTTGAATATGAGGCAGTGCT
GTTGAAATACAAAAGCGGTAGTACAAACTACAAAGCATCAATATTCTGCA
GAATATTGATGACAAACGCCAAACAAGAGAATACGAACTCGAAAACCAGC
CTAATAGGTATTACAAAAGATAAGTGACCACCGAGGAGCGACTAACGTCT
AGTAGGTAGCGGGCAGAGTGTTCAGTGTTTGAGCAAGGCAAGGACCTTAG
CCCAAGCCGGTCTGGAAGTGATATCAGCTGCCCATGCGCTAACATGGGGG
CGTGCATCAAACAGCTTCTTGACAGGCGTCCCCAACAACAAATTAATATT
GGGGAGATGATGCAAATCGACCAAGGTGAAGCTGTCGCACGCCAAGTATT
TGGACTGAGACAAACGGGCCTCGTAAACATCTAAAATTTTGGCAAGCTTA
GCTTCATTTTCTTCAACCGCAGCTGGATCAGTGGTCATTCCAAACATTGG
CTTGTACACGAGCTCCCAGTTGAGCTTCGATGATGGGGGGTCGAACTGGA
GTGCCTCCACCTCCTTCCATACCAATAACGGGGCGATGGGCTTGCCTGGG
CATGTTAACTGGGTGCCTTTGTCTGGAAACTCCTGGGCGATGTATTGGGT
GATTGCCCTTGATTCGAAGAGCTTCTGGTCGCCGTGTTCAAGCACCGGAA
CTTGACCGAATGGATTCAAAGAAAGGAAGGCCTCCTTTTTGTGTTCACCA
GCCTTCATGTCTACGGGGACAAGCTCGTATTCGAGCTCCTTCTCGTAGAG
GGATGCGAAAACTCGCTGCGTAGCAGTTG
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